Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Reverse (-)

13651596 .. 13651939

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG174200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGGCGTTCGCTCAGAATTCTACCGGATTGAAGAAGCCCTCCGTCGGGTCGTGCATGTTCGGCGCCAAGGCCATGAACGCTGTGCTTGAGTACTGCACGGCGCTCGAGGAGCTATCGGTGAAGCGGCTCCGGGGGATCCACGACGCGTCGGAGCAGATCGGAGCCGGCAAAACGCCGTCGACGCTGAAATCCATCTGCCTGAAGGAGATACTGAATGGCCAGTGCTTTGGACCGCTGATTGGGCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

84

Amino Acids

8.83

Weight (kDa)

8.42

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	1 cut(s)	149
AciI	CCGC	3 cut(s)	5, 127, 236
AclWI	GGATC	2 cut(s)	133, 146
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	3 cut(s)	47, 48, 242
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AlwI	GGATC	2 cut(s)	133, 146
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	72, 220
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	68, 106
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	65
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	117, 163
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BcnI	CCSGG	1 cut(s)	134
BfoI	RGCGCY	2 cut(s)	69, 107
BisI	GCNGC	2 cut(s)	6, 128
BlsI	GCNGC	2 cut(s)	7, 129
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	4 cut(s)	67, 131, 140, 166
BmrFI	CCNGG	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	69, 133
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 48, 242
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	69, 133
BseLI	CCNNNNNNNGG	3 cut(s)	47, 48, 242
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	74, 222
BshNI	GGYRCC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	27, 133, 168
BslI	CCNNNNNNNGG	3 cut(s)	47, 48, 242
BsnI	GGCC	2 cut(s)	74, 222
BsoBI	CYCGRG	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	138, 159
BspACI	CCGC	3 cut(s)	5, 127, 236
BspANI	GGCC	2 cut(s)	74, 222
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	4 cut(s)	67, 131, 140, 166
BspPI	GGATC	2 cut(s)	133, 146
BspT107I	GGYRCC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	69, 133
BssMI	GATC	2 cut(s)	138, 159
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	2 cut(s)	69, 107
BstHHI	GCGC	2 cut(s)	68, 106
BstKTI	GATC	2 cut(s)	141, 162
BstMBI	GATC	2 cut(s)	138, 159
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 63, 80, 112, 184, 244
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	74, 222
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	2 cut(s)	68, 106
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	3 cut(s)	138, 155, 193
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	58, 76
CviJI	RGCY	7 cut(s)	40, 74, 115, 130, 167, 222, 247
CviKI_1	RGCY	7 cut(s)	40, 74, 115, 130, 167, 222, 247
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	15
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	2 cut(s)	140, 161
DpnII	GATC	2 cut(s)	138, 159
EaeI	YGGCCR	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	61, 79
FaiI	YATR	2 cut(s)	59, 77
FatI	CATG	2 cut(s)	57, 75
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	6, 128
Fsp4HI	GCNGC	2 cut(s)	6, 128
GlaI	GCGC	2 cut(s)	67, 105
GluI	GCNGC	2 cut(s)	6, 128
HaeII	RGCGCY	2 cut(s)	69, 107
HaeIII	GGCC	2 cut(s)	74, 222
HapII	CCGG	3 cut(s)	27, 133, 168
HgaI	GACGC	3 cut(s)	138, 155, 193
HhaI	GCGC	2 cut(s)	68, 106
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	61, 79
Hin6I	GCGC	2 cut(s)	66, 104
HinP1I	GCGC	2 cut(s)	66, 104
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HpaII	CCGG	3 cut(s)	27, 133, 168
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	3 cut(s)	18, 154, 164
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	5 cut(s)	50, 149, 154, 184, 187
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	57, 99
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 63, 80, 112, 184, 244
HpyF3I	CTNAG	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	61, 79
HspAI	GCGC	2 cut(s)	66, 104
KasI	GGCGCC	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	138, 159
LmnI	GCTCC	4 cut(s)	112, 135, 154, 164
LpnPI	CCDG	5 cut(s)	40, 146, 181, 215, 236
MalI	GATC	2 cut(s)	140, 161
MboI	GATC	2 cut(s)	138, 159
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	1 cut(s)	19
MluI	ACGCGT	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	222
Mly113I	GGCGCC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	52, 103
Mox20I	TGGCCA	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	3 cut(s)	27, 133, 168
MspR9I	CCNGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	6 cut(s)	11, 63, 80, 112, 184, 244
NaeI	GCCGGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	138, 159
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	61, 79
NlaIV	GGNNCC	4 cut(s)	67, 131, 140, 166
NspI	RCATGY	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	107
PdiI	GCCGGC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	7, 129
PluTI	GGCGCC	1 cut(s)	69
PspN4I	GGNNCC	4 cut(s)	67, 131, 140, 166
PspPI	GGNCC	1 cut(s)	233
PspXI	VCTCGAGB	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	181
SatI	GCNGC	2 cut(s)	6, 128
Sau3AI	GATC	2 cut(s)	138, 159
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	107
SgrDI	CGTCGACG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	89, 107
SmoI	CTYRAG	2 cut(s)	89, 107
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	3 cut(s)	5, 127, 236
SspDI	GGCGCC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	2 cut(s)	108, 182
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	2 cut(s)	8, 130
TscAI	CASTG	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.