Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

29640557 .. 29641794

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG254300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCCGGAACCTCACATACCTGAATCTCTGCGAGTGCTGCGAGTTGACAGACGCAGGCATGCTGGTGTCCGCGAAGAAGCTCTCCTATGGATCGTGCACCTTGGAGCTAAGGGAATTAACGCCGTGCTGGAAAATTGCTCGGCACTGGAAGAGTTATCTGTGAAGAGGCTCGATGGTATTGGGTCGGACGAGTATGTGGTGGAACCCATTAGGCCGGGCATTTCTGCTTTGTCGCTTAAGACAATTTGCTTGAAAGAGCTTTATAATGGACAATGTCCTGACTGGTGGAAGTCAAACCGTGTGGAGATGAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

105

Amino Acids

11.9

Weight (kDa)

6.83

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	98
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	253
AluBI	AGCT	3 cut(s)	80, 107, 259
AluI	AGCT	3 cut(s)	80, 107, 259
Alw21I	GWGCWC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	212
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	236
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	9, 204
BmrFI	CCNGG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	150, 287
BseDI	CCNNGG	1 cut(s)	100
BseNI	ACTGG	2 cut(s)	150, 287
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	5, 215
BsnI	GGCC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	9, 204
BspPI	GGATC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	150, 287
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	2 cut(s)	144, 158
BstAFI	CTTAAG	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	56, 60
BstDEI	CTNAG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	56, 60
CseI	GACGC	1 cut(s)	60
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	5 cut(s)	80, 107, 169, 214, 259
CviKI_1	RGCY	5 cut(s)	80, 107, 169, 214, 259
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	144, 158
EarI	CTCTTC	2 cut(s)	144, 158
Eco130I	CCWWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	1 cut(s)	62
FaiI	YATR	5 cut(s)	17, 60, 88, 195, 264
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	2 cut(s)	5, 215
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	5, 215
Hpy166II	GTNNAC	2 cut(s)	46, 97
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	46, 97
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	9 cut(s)	18, 33, 40, 48, 113, 131, 228, 268, 291
Lsp1109I	GCAGC	1 cut(s)	24
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	3 cut(s)	86, 161, 175
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	3 cut(s)	114, 133, 243
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	21, 159
MseI	TTAA	2 cut(s)	117, 237
MslI	CAYNNNNRTG	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	2 cut(s)	5, 215
MspR9I	CCNGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	2 cut(s)	9, 204
NmeAIII	GCCGAG	1 cut(s)	119
NspI	RCATGY	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	9, 204
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	117, 237
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	7 cut(s)	13, 22, 82, 102, 109, 261, 315
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	3 cut(s)	114, 133, 243
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	171
TasI	AATT	3 cut(s)	114, 133, 243
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	117, 237
Tru9I	TTAA	2 cut(s)	117, 237
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	1 cut(s)	37
TspRI	CASTG	1 cut(s)	150
Tth111I	GACNNNGTC	1 cut(s)	273
Vha464I	CTTAAG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	95
XceI	RCATGY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.