Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Reverse (-)

38672290 .. 38673302

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACTTACCGTGCATGGATAACGATGACCTCTCGCTGCGCGGGAAGCCTACCAACCACAAGGTTTTCGGCGAAGACGTTGCCATTTTGGCCTCGCAACGCGCTTCTCTCCTTTGCGTTCGAGCACCAAGCCTTGTCTACCGTCGGTGTCGAGCCTTCTAGAATCGTTCGAGCCGTGGAAGAGCTTGCCCGATCAACTGGGTCGGAGGGATTGGTGGCGGGTCAAGTCGTGGATATCCACTCCGAGGGGTTATCCAACGTGGGACCGGAGCACTGGAGGGGCAATAAATTCGGACATCGGAATCCGGTCACCGGTTCGGTAGCCGGATTCGGGATTCCGGTGATCGGTCGCAGGATTCTAGTCATCGGTTGTCGGATTACGGTCGCCGCCTCGGGTCACCGATCGCGGAGTCCGCCACCGGAGTCAAGCAAGGTCTCCAATGACTTCTTTCTCAAAGTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

154

Amino Acids

16.66

Weight (kDa)

10.76

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	137
AccII	CGCG	3 cut(s)	41, 101, 406
AciI	CCGC	5 cut(s)	41, 218, 387, 406, 413
AcsI	RAATTY	1 cut(s)	287
AfiI	CCNNNNNNNGG	4 cut(s)	244, 311, 330, 344
AgeI	ACCGGT	1 cut(s)	311
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw21I	GWGCWC	2 cut(s)	126, 273
Alw26I	GTCTC	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	287
AsiGI	ACCGGT	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	41, 103
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	301, 352, 389
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	126, 273
BbvI	GCAGC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 271, 305
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	2 cut(s)	159, 359
BglI	GCCNNNNNGGC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	37, 387
BlsI	GCNGC	2 cut(s)	38, 388
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	3 cut(s)	174, 243, 390
BsaWI	WCCGGW	5 cut(s)	265, 304, 311, 337, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 311, 330, 344
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	202, 278
BseDI	CCNNGG	3 cut(s)	174, 243, 390
BseLI	CCNNNNNNNGG	4 cut(s)	244, 311, 330, 344
BseNI	ACTGG	2 cut(s)	202, 278
BseXI	GCAGC	1 cut(s)	23
Bsh1236I	CGCG	3 cut(s)	41, 101, 406
Bsh1285I	CGRYCG	3 cut(s)	349, 384, 404
BshFI	GGCC	1 cut(s)	91
BshTI	ACCGGT	1 cut(s)	311
BsiEI	CGRYCG	3 cut(s)	349, 384, 404
BsiHKAI	GWGCWC	2 cut(s)	126, 273
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	6 cut(s)	266, 305, 312, 324, 338, 419
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	4 cut(s)	244, 311, 330, 344
BsmAI	GTCTC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	126, 273
Bsp143I	GATC	3 cut(s)	191, 342, 401
BspACI	CCGC	5 cut(s)	41, 218, 387, 406, 413
BspANI	GGCC	1 cut(s)	91
BspFNI	CGCG	3 cut(s)	41, 101, 406
BspLI	GGNNCC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	202, 278
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	3 cut(s)	174, 243, 390
BssMI	GATC	3 cut(s)	191, 342, 401
Bst4CI	ACNGT	3 cut(s)	11, 142, 382
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	2 cut(s)	307, 395
BstFNI	CGCG	3 cut(s)	41, 101, 406
BstHHI	GCGC	2 cut(s)	41, 103
BstKTI	GATC	3 cut(s)	194, 345, 404
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	3 cut(s)	191, 342, 401
BstMCI	CGRYCG	3 cut(s)	349, 384, 404
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 88, 412
BstPI	GGTNACC	2 cut(s)	307, 395
BstUI	CGCG	3 cut(s)	41, 101, 406
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	2 cut(s)	41, 103
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	263
CspAI	ACCGGT	1 cut(s)	311
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	7 cut(s)	48, 91, 131, 154, 173, 184, 323
CviKI_1	RGCY	7 cut(s)	48, 91, 131, 154, 173, 184, 323
DpnI	GATC	3 cut(s)	193, 344, 403
DpnII	GATC	3 cut(s)	191, 342, 401
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	391
Eco91I	GGTNACC	2 cut(s)	307, 395
EcoO65I	GGTNACC	2 cut(s)	307, 395
EcoRV	GATATC	1 cut(s)	235
FaeI	CATG	1 cut(s)	18
FaiI	YATR	2 cut(s)	16, 463
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	14
FauI	CCCGC	2 cut(s)	34, 211
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	37, 387
Fsp4HI	GCNGC	2 cut(s)	37, 387
FspBI	CTAG	2 cut(s)	159, 359
GlaI	GCGC	2 cut(s)	40, 102
GluI	GCNGC	2 cut(s)	37, 387
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	6 cut(s)	266, 305, 312, 324, 338, 419
HhaI	GCGC	2 cut(s)	41, 103
Hin1II	CATG	1 cut(s)	18
Hin6I	GCGC	2 cut(s)	39, 101
HinP1I	GCGC	2 cut(s)	39, 101
HinfI	GANTC	7 cut(s)	162, 301, 327, 334, 355, 409, 422
HpaII	CCGG	6 cut(s)	266, 305, 312, 324, 338, 419
HphI	GGTGA	3 cut(s)	301, 352, 389
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	5 cut(s)	205, 244, 293, 300, 375
Hpy188III	TCNNGA	2 cut(s)	159, 331
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	3 cut(s)	11, 142, 382
HpyCH4IV	ACGT	2 cut(s)	77, 258
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 88, 412
HpySE526I	ACGT	2 cut(s)	77, 258
Hsp92II	CATG	1 cut(s)	18
HspAI	GCGC	2 cut(s)	39, 101
Kzo9I	GATC	3 cut(s)	191, 342, 401
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	183, 259, 279, 318, 325, 337, 337, 351, 432
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	159, 359
MaeII	ACGT	2 cut(s)	77, 258
MaeIII	GTNAC	3 cut(s)	307, 395, 457
MalI	GATC	3 cut(s)	193, 344, 403
MboI	GATC	3 cut(s)	191, 342, 401
MboII	GAAGA	2 cut(s)	85, 191
MhlI	GDGCHC	2 cut(s)	126, 273
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	418, 431
MmeI	TCCRAC	3 cut(s)	183, 279, 353
MnlI	CCTC	6 cut(s)	40, 102, 199, 238, 270, 400
MspI	CCGG	6 cut(s)	266, 305, 312, 324, 338, 419
MvnI	CGCG	3 cut(s)	41, 101, 406
MwoI	GCNNNNNNNGC	3 cut(s)	45, 88, 412
NdeII	GATC	3 cut(s)	191, 342, 401
NlaIII	CATG	1 cut(s)	18
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	3 cut(s)	307, 395, 457
PciSI	GCTCTTC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	2 cut(s)	74, 171
PfeI	GAWTC	5 cut(s)	162, 301, 327, 334, 355
PinAI	ACCGGT	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	38, 388
Ple19I	CGATCG	1 cut(s)	404
PleI	GAGTC	2 cut(s)	417, 430
PpsI	GAGTC	2 cut(s)	417, 430
PspEI	GGTNACC	2 cut(s)	307, 395
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
PvuI	CGATCG	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	174
SatI	GCNGC	2 cut(s)	37, 387
Sau3AI	GATC	3 cut(s)	191, 342, 401
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	418, 431
SduI	GDGCHC	2 cut(s)	126, 273
SetI	ASST	6 cut(s)	32, 65, 80, 186, 261, 435
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	5 cut(s)	41, 218, 387, 406, 413
SspMI	CTAG	2 cut(s)	159, 359
TaaI	ACNGT	3 cut(s)	11, 142, 382
TaiI	ACGT	2 cut(s)	80, 261
TaqI	TCGA	3 cut(s)	120, 150, 169
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	287
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	5 cut(s)	162, 301, 327, 334, 355
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	3 cut(s)	307, 395, 457
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	3 cut(s)	307, 395, 457
TspRI	CASTG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	287
XbaI	TCTAGA	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	2 cut(s)	159, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.