Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000131.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

5493 .. 5939

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000131.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggcggcgttcgctcagaattctattggattgaagaagctctccgtcgggttgtgcttgttcggcgccaaggccatgaacgccgtgcttgagtactgcacggtgctcgaggagctatcggtgaagcggctccgggggatccacgacgcgtcggagcagatcggagccggcaaaacgtcgtcgacgctgaaatcgatctgcctgaaggagatactgaatggccagtgctttggaccgctgattgtaagctcgaaaaaccttaagactttgaaattgtttagatgtttgggagattgggatagggttttggaaatgcttggaaatgggaacaggggattgactgaaattcatcttgagaggattcaagtgactgatttggggctttcagcgattgccaaatgctcgaatttggaggtcttgcacattgttaaggccaaatgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

148

Amino Acids

16.13

Weight (kDa)

9.11

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	1 cut(s)	149
AciI	CCGC	3 cut(s)	5, 127, 236
AclWI	GGATC	2 cut(s)	133, 146
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	19, 345, 406
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	34, 271, 365
AluBI	AGCT	3 cut(s)	40, 115, 249
AluI	AGCT	3 cut(s)	40, 115, 249
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	133, 146
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	3 cut(s)	72, 220, 432
ApoI	RAATTY	3 cut(s)	19, 345, 406
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BcnI	CCSGG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	6, 128
BlsI	GCNGC	2 cut(s)	7, 129
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	4 cut(s)	67, 131, 140, 166
BmrFI	CCNGG	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	110, 374
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	69, 133
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	69, 133
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	74, 222, 434
BshNI	GGYRCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	133, 168
BsnI	GGCC	3 cut(s)	74, 222, 434
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	138, 159, 195
BspACI	CCGC	3 cut(s)	5, 127, 236
BspANI	GGCC	3 cut(s)	74, 222, 434
BspCNI	CTCAG	1 cut(s)	28
BspDI	ATCGAT	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	4 cut(s)	67, 131, 140, 166
BspPI	GGATC	2 cut(s)	133, 146
BspT107I	GGYRCC	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	69, 133
BssMI	GATC	3 cut(s)	138, 159, 195
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	66
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	141, 162, 198
BstMBI	GATC	3 cut(s)	138, 159, 195
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 63, 80, 112
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	74, 222, 434
BsuTUI	ATCGAT	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	194
CseI	GACGC	3 cut(s)	138, 155, 193
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	9 cut(s)	40, 74, 115, 130, 167, 222, 249, 382, 434
CviKI_1	RGCY	9 cut(s)	40, 74, 115, 130, 167, 222, 249, 382, 434
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	15
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	3 cut(s)	140, 161, 197
DpnII	GATC	3 cut(s)	138, 159, 195
EaeI	YGGCCR	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	6, 128
Fsp4HI	GCNGC	2 cut(s)	6, 128
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	6, 128
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	74, 222, 434
HapII	CCGG	2 cut(s)	133, 168
HgaI	GACGC	3 cut(s)	138, 155, 193
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	133, 168
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	3 cut(s)	18, 154, 164
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	6 cut(s)	50, 149, 154, 181, 184, 187
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	99, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 63, 80, 112
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	138, 159, 195
LmnI	GCTCC	4 cut(s)	112, 135, 154, 164
LpnPI	CCDG	5 cut(s)	146, 181, 215, 236, 316
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	140, 161, 197
MboI	GATC	3 cut(s)	138, 159, 195
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	4 cut(s)	19, 272, 345, 406
MluI	ACGCGT	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	222
Mly113I	GGCGCC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	3 cut(s)	103, 351, 406
Mox20I	TGGCCA	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	2 cut(s)	261, 429
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	238
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	2 cut(s)	133, 168
MspR9I	CCNGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	11, 63, 80, 112
NaeI	GCCGGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	3 cut(s)	138, 159, 195
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	4 cut(s)	67, 131, 140, 166
NmuCI	GTSAC	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	7, 129
PluTI	GGCGCC	1 cut(s)	69
PspN4I	GGNNCC	4 cut(s)	67, 131, 140, 166
PspPI	GGNCC	1 cut(s)	233
PspXI	VCTCGAGB	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	261, 429
SatI	GCNGC	2 cut(s)	6, 128
Sau3AI	GATC	3 cut(s)	138, 159, 195
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	6 cut(s)	42, 117, 179, 251, 261, 417
SfoI	GGCGCC	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	107
SgrDI	CGTCGACG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	4 cut(s)	89, 107, 260, 353
SmoI	CTYRAG	4 cut(s)	89, 107, 260, 353
Sse9I	AATT	4 cut(s)	19, 272, 345, 406
SsiI	CCGC	3 cut(s)	5, 127, 236
SspDI	GGCGCC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	5 cut(s)	108, 182, 194, 251, 404
TasI	AATT	4 cut(s)	19, 272, 345, 406
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	2 cut(s)	8, 130
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	2 cut(s)	261, 429
Tru9I	TTAA	2 cut(s)	261, 429
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	92, 338
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	230
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	3 cut(s)	19, 345, 406
XhoI	CTCGAG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.