Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011951.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

26495 .. 29410

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011951.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgttggcgcggcgcgtcagcggtgatcttgggatgagccggagctcaggcgatagcctgcctggtggtgtttccataggtcacacccttgatggctatctggaaccgctatcggctgcgatctccaatctggtggatgacaagtcttcgatggcggttaggccttgttggaagttagcgacgcggtcgatggaggaggtttcaatgctagcactccagcaaagttggaggggttggcgctctcatcctgctacggtgccggaacctcacgcacctgaagctccgcgcgtgccgcaagttgaccgaagcaagcatgttggcgtccgcgaagaactacaaggtttgaagaatctctcctgtggattgtgcaccttcggagccaaaggaatgaacgccgtgctggaaaattgctcggcactagaagagttatcggtgaagcggctccgtggttttcggccggacgagtctgcggtggagcccgctgggctaggcatttctgcttcgtcgctcaagacaatttgcctgaaagagctttacaatggacagtgtttcgggcagagtcacgtctatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

191

Amino Acids

20.54

Weight (kDa)

7.64

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccII	CGCG	6 cut(s)	10, 15, 184, 286, 288, 327
AcoI	YGGCCR	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	204, 346
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	3 cut(s)	45, 281, 532
AluI	AGCT	3 cut(s)	45, 281, 532
Alw21I	GWGCWC	2 cut(s)	47, 371
Alw44I	GTGCAC	1 cut(s)	367
AoxI	GGCC	2 cut(s)	161, 455
ApaLI	GTGCAC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	4 cut(s)	10, 15, 240, 288
AsuHPI	GGTGA	2 cut(s)	35, 445
AsuNHI	GCTAGC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	2 cut(s)	47, 480
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	47, 371
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	3 cut(s)	86, 145, 184
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	63
BfaI	CTAG	3 cut(s)	209, 419, 488
BfoI	RGCGCY	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	484
BisI	GCNGC	4 cut(s)	11, 117, 293, 440
BlsI	GCNGC	4 cut(s)	12, 118, 294, 441
Bme1390I	CCNGG	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	565
BmiI	GGNNCC	6 cut(s)	105, 258, 264, 379, 443, 477
BmrFI	CCNGG	1 cut(s)	63
BmtI	GCTAGC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	3 cut(s)	39, 142, 244
BseJI	GATNNNNATC	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	371
BseX3I	CGGCCG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	482
Bsh1236I	CGCG	6 cut(s)	10, 15, 184, 286, 288, 327
Bsh1285I	CGRYCG	2 cut(s)	188, 458
BshFI	GGCC	2 cut(s)	163, 457
BshNI	GGYRCC	1 cut(s)	256
BsiEI	CGRYCG	2 cut(s)	188, 458
BsiHKAI	GWGCWC	2 cut(s)	47, 371
BsiSI	CCGG	3 cut(s)	40, 260, 458
BsnI	GGCC	2 cut(s)	163, 457
Bsp1286I	GDGCHC	3 cut(s)	47, 371, 480
Bsp143I	GATC	2 cut(s)	25, 120
BspANI	GGCC	2 cut(s)	163, 457
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	6 cut(s)	10, 15, 184, 286, 288, 327
BspLI	GGNNCC	6 cut(s)	105, 258, 264, 379, 443, 477
BspOI	GCTAGC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	2 cut(s)	25, 120
BssNI	GRCGYC	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	256, 546
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	321
BstC8I	GCNNGC	5 cut(s)	59, 210, 290, 311, 480
BstDEI	CTNAG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	445
BstF5I	GGATG	3 cut(s)	39, 142, 244
BstFNI	CGCG	6 cut(s)	10, 15, 184, 286, 288, 327
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	4 cut(s)	10, 15, 240, 288
BstKTI	GATC	2 cut(s)	28, 123
BstMBI	GATC	2 cut(s)	25, 120
BstMCI	CGRYCG	2 cut(s)	188, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 292, 484
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	6 cut(s)	10, 15, 184, 286, 288, 327
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	163, 457
BtgI	CCRYGG	1 cut(s)	445
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	39, 142, 244
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	5 cut(s)	59, 210, 290, 311, 480
CfoI	GCGC	4 cut(s)	10, 15, 240, 288
CseI	GACGC	3 cut(s)	4, 190, 310
CviAII	CATG	1 cut(s)	314
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	2 cut(s)	27, 122
DpnII	GATC	2 cut(s)	25, 120
EaeI	YGGCCR	1 cut(s)	455
EagI	CGGCCG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	455
Eco147I	AGGCCT	1 cut(s)	163
Eco24I	GRGCYC	2 cut(s)	47, 480
Eco52I	CGGCCG	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	61
EcoT38I	GRGCYC	2 cut(s)	47, 480
FaeI	CATG	1 cut(s)	317
FaiI	YATR	3 cut(s)	77, 315, 570
FatI	CATG	1 cut(s)	313
FauI	CCCGC	1 cut(s)	487
Fnu4HI	GCNGC	4 cut(s)	11, 117, 293, 440
FokI	GGATG	3 cut(s)	46, 149, 231
FriOI	GRGCYC	2 cut(s)	47, 480
Fsp4HI	GCNGC	4 cut(s)	11, 117, 293, 440
FspBI	CTAG	3 cut(s)	209, 419, 488
GlaI	GCGC	4 cut(s)	9, 14, 239, 287
GluI	GCNGC	4 cut(s)	11, 117, 293, 440
GsaI	CCCAGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	163, 457
HapII	CCGG	3 cut(s)	40, 260, 458
HgaI	GACGC	3 cut(s)	4, 190, 310
HhaI	GCGC	4 cut(s)	10, 15, 240, 288
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	4 cut(s)	8, 13, 238, 286
HinP1I	GCGC	4 cut(s)	8, 13, 238, 286
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	349, 464, 559
HpaII	CCGG	3 cut(s)	40, 260, 458
HphI	GGTGA	2 cut(s)	35, 445
Hpy166II	GTNNAC	2 cut(s)	301, 369
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	101, 511
Hpy8I	GTNNAC	2 cut(s)	301, 369
Hpy99I	CGWCG	2 cut(s)	184, 508
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	2 cut(s)	256, 546
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	1 cut(s)	369
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 292, 484
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	564
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	4 cut(s)	8, 13, 238, 286
Kzo9I	GATC	2 cut(s)	25, 120
LmnI	GCTCC	5 cut(s)	42, 286, 377, 447, 475
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	3 cut(s)	209, 419, 488
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	80, 560
MalI	GATC	2 cut(s)	27, 122
MboI	GATC	2 cut(s)	25, 120
MboII	GAAGA	4 cut(s)	138, 341, 358, 434
MhlI	GDGCHC	3 cut(s)	47, 371, 480
MluCI	AATT	2 cut(s)	406, 516
MlyI	GAGTC	2 cut(s)	473, 568
MmeI	TCCRAC	2 cut(s)	149, 206
MnlI	CCTC	4 cut(s)	187, 190, 222, 276
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	2 cut(s)	21, 482
MspI	CCGG	3 cut(s)	40, 260, 458
MspR9I	CCNGG	1 cut(s)	63
MteI	GCGCNGCGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	6 cut(s)	10, 15, 184, 286, 288, 327
MwoI	GCNNNNNNNGC	3 cut(s)	278, 292, 484
NdeII	GATC	2 cut(s)	25, 120
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	6 cut(s)	105, 258, 264, 379, 443, 477
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	2 cut(s)	80, 560
NspI	RCATGY	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	349
PflFI	GACNNNGTC	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	12, 118, 294, 441
PleI	GAGTC	2 cut(s)	472, 567
PpsI	GAGTC	2 cut(s)	472, 567
Psp124BI	GAGCTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	6 cut(s)	105, 258, 264, 379, 443, 477
PsyI	GACNNNGTC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	47
SatI	GCNGC	4 cut(s)	11, 117, 293, 440
Sau3AI	GATC	2 cut(s)	25, 120
SchI	GAGTC	2 cut(s)	473, 568
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	3 cut(s)	47, 371, 480
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	2 cut(s)	406, 516
SseBI	AGGCCT	1 cut(s)	163
SspMI	CTAG	3 cut(s)	209, 419, 488
SstI	GAGCTC	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	256, 546
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	2 cut(s)	149, 188
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	406, 516
TauI	GCSGC	3 cut(s)	13, 295, 442
TfiI	GAWTC	1 cut(s)	349
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	2 cut(s)	80, 560
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	80, 560
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	551
Tth111I	GACNNNGTC	1 cut(s)	184
VneI	GTGCAC	1 cut(s)	367
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	3 cut(s)	209, 419, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.