f-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0462581 |
| rosa_laevigata | RLG00000017278 |
| rosa_multiflora | Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630 |
| rosa_samantha | Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 213 |
| AciI | CCGC | 3 cut(s) | 179, 338, 376 |
| AclWI | GGATC | 1 cut(s) | 292 |
| AcyI | GRCGYC | 1 cut(s) | 315 |
| AfaI | GTAC | 1 cut(s) | 61 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 26, 473 |
| AflII | CTTAAG | 1 cut(s) | 424 |
| AgsI | TTSAA | 2 cut(s) | 92, 268 |
| AluBI | AGCT | 5 cut(s) | 165, 206, 274, 358, 447 |
| AluI | AGCT | 5 cut(s) | 165, 206, 274, 358, 447 |
| Alw21I | GWGCWC | 1 cut(s) | 293 |
| Alw44I | GTGCAC | 1 cut(s) | 289 |
| AlwI | GGATC | 1 cut(s) | 292 |
| Ama87I | CYCGRG | 1 cut(s) | 219 |
| ApaLI | GTGCAC | 1 cut(s) | 289 |
| ApeKI | GCWGC | 3 cut(s) | 110, 176, 358 |
| AspLEI | GCGC | 1 cut(s) | 213 |
| AsuHPI | GGTGA | 1 cut(s) | 149 |
| AvaI | CYCGRG | 1 cut(s) | 219 |
| BaeGI | GKGCMC | 1 cut(s) | 293 |
| BanII | GRGCYC | 1 cut(s) | 396 |
| Bbv12I | GWGCWC | 1 cut(s) | 293 |
| BbvI | GCAGC | 3 cut(s) | 97, 163, 345 |
| BccI | CCATC | 2 cut(s) | 316, 373 |
| BceAI | ACGGC | 1 cut(s) | 486 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 340, 374 |
| BciVI | GTATCC | 1 cut(s) | 526 |
| BclI | TGATCA | 1 cut(s) | 517 |
| BfaI | CTAG | 1 cut(s) | 550 |
| BfrI | CTTAAG | 1 cut(s) | 424 |
| BfuI | GTATCC | 1 cut(s) | 526 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 400 |
| BisI | GCNGC | 3 cut(s) | 111, 177, 359 |
| BlsI | GCNGC | 3 cut(s) | 112, 178, 360 |
| BmeT110I | CYCGRG | 1 cut(s) | 219 |
| BmiI | GGNNCC | 2 cut(s) | 301, 393 |
| BmsI | GCATC | 1 cut(s) | 206 |
| Bsa29I | ATCGAT | 1 cut(s) | 350 |
| BsaHI | GRCGYC | 1 cut(s) | 315 |
| BsaJI | CCNNGG | 2 cut(s) | 303, 364 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 26, 473 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| BseCI | ATCGAT | 1 cut(s) | 350 |
| BseDI | CCNNGG | 2 cut(s) | 303, 364 |
| BseGI | GGATG | 2 cut(s) | 197, 384 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 26, 473 |
| BseRI | GAGGAG | 1 cut(s) | 107 |
| BseSI | GKGCMC | 1 cut(s) | 293 |
| BseXI | GCAGC | 3 cut(s) | 97, 163, 345 |
| BseYI | CCCAGC | 1 cut(s) | 403 |
| Bsh1236I | CGCG | 1 cut(s) | 213 |
| BshVI | ATCGAT | 1 cut(s) | 350 |
| BsiHKAI | GWGCWC | 1 cut(s) | 293 |
| BsiHKCI | CYCGRG | 1 cut(s) | 219 |
| BsiSI | CCGG | 1 cut(s) | 20 |
| BslFI | GGGAC | 2 cut(s) | 233, 449 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 26, 473 |
| BsmFI | GGGAC | 2 cut(s) | 233, 449 |
| BsoBI | CYCGRG | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 2 cut(s) | 293, 396 |
| Bsp143I | GATC | 2 cut(s) | 284, 517 |
| BspACI | CCGC | 3 cut(s) | 179, 338, 376 |
| BspDI | ATCGAT | 1 cut(s) | 350 |
| BspFNI | CGCG | 1 cut(s) | 213 |
| BspLI | GGNNCC | 2 cut(s) | 301, 393 |
| BspPI | GGATC | 1 cut(s) | 292 |
| BspTI | CTTAAG | 1 cut(s) | 424 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssECI | CCNNGG | 2 cut(s) | 303, 364 |
| BssMI | GATC | 2 cut(s) | 284, 517 |
| BssNI | GRCGYC | 1 cut(s) | 315 |
| BssT1I | CCWWGG | 1 cut(s) | 303 |
| Bst4CI | ACNGT | 3 cut(s) | 16, 59, 77 |
| Bst6I | CTCTTC | 1 cut(s) | 336 |
| BstACI | GRCGYC | 1 cut(s) | 315 |
| BstAFI | CTTAAG | 1 cut(s) | 424 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 38 |
| BstC8I | GCNNGC | 3 cut(s) | 215, 240, 504 |
| BstDSI | CCRYGG | 1 cut(s) | 364 |
| BstF5I | GGATG | 2 cut(s) | 197, 384 |
| BstFNI | CGCG | 1 cut(s) | 213 |
| BstHHI | GCGC | 1 cut(s) | 213 |
| BstKTI | GATC | 2 cut(s) | 287, 520 |
| BstMBI | GATC | 2 cut(s) | 284, 517 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 38, 203, 400 |
| BstNSI | RCATGY | 2 cut(s) | 36, 242 |
| BstSLI | GKGCMC | 1 cut(s) | 293 |
| BstUI | CGCG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 3 cut(s) | 97, 163, 345 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 310, 403 |
| Bsu15I | ATCGAT | 1 cut(s) | 350 |
| BsuI | GTATCC | 1 cut(s) | 526 |
| BsuTUI | ATCGAT | 1 cut(s) | 350 |
| BtgI | CCRYGG | 1 cut(s) | 364 |
| BtsCI | GGATG | 2 cut(s) | 197, 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 21 |
| Cac8I | GCNNGC | 3 cut(s) | 215, 240, 504 |
| CfoI | GCGC | 1 cut(s) | 213 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| ClaI | ATCGAT | 1 cut(s) | 350 |
| CseI | GACGC | 1 cut(s) | 323 |
| Csp6I | GTAC | 1 cut(s) | 60 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 470, 505 |
| CviAII | CATG | 4 cut(s) | 33, 121, 239, 319 |
| CviQI | GTAC | 1 cut(s) | 60 |
| DpnI | GATC | 2 cut(s) | 286, 519 |
| DpnII | GATC | 2 cut(s) | 284, 517 |
| Eam1104I | CTCTTC | 1 cut(s) | 336 |
| EarI | CTCTTC | 1 cut(s) | 336 |
| EciI | GGCGGA | 2 cut(s) | 353, 391 |
| Eco130I | CCWWGG | 1 cut(s) | 303 |
| Eco24I | GRGCYC | 1 cut(s) | 396 |
| Eco88I | CYCGRG | 1 cut(s) | 219 |
| EcoT14I | CCWWGG | 1 cut(s) | 303 |
| EcoT38I | GRGCYC | 1 cut(s) | 396 |
| ErhI | CCWWGG | 1 cut(s) | 303 |
| FaeI | CATG | 4 cut(s) | 36, 124, 242, 322 |
| FaiI | YATR | 5 cut(s) | 34, 107, 122, 240, 320 |
| FaqI | GGGAC | 2 cut(s) | 233, 449 |
| FatI | CATG | 4 cut(s) | 32, 120, 238, 318 |
| FbaI | TGATCA | 1 cut(s) | 517 |
| Fnu4HI | GCNGC | 3 cut(s) | 111, 177, 359 |
| FokI | GGATG | 2 cut(s) | 184, 391 |
| FriOI | GRGCYC | 1 cut(s) | 396 |
| Fsp4HI | GCNGC | 3 cut(s) | 111, 177, 359 |
| FspBI | CTAG | 1 cut(s) | 550 |
| GlaI | GCGC | 1 cut(s) | 212 |
| GluI | GCNGC | 3 cut(s) | 111, 177, 359 |
| GsaI | CCCAGC | 1 cut(s) | 407 |
| HapII | CCGG | 1 cut(s) | 20 |
| HgaI | GACGC | 1 cut(s) | 323 |
| HhaI | GCGC | 1 cut(s) | 213 |
| Hin1I | GRCGYC | 1 cut(s) | 315 |
| Hin1II | CATG | 4 cut(s) | 36, 124, 242, 322 |
| Hin6I | GCGC | 1 cut(s) | 211 |
| HinP1I | GCGC | 1 cut(s) | 211 |
| HincII | GTYRAC | 1 cut(s) | 226 |
| HindII | GTYRAC | 1 cut(s) | 226 |
| HinfI | GANTC | 1 cut(s) | 66 |
| HpaII | CCGG | 1 cut(s) | 20 |
| HphI | GGTGA | 1 cut(s) | 149 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 226, 291 |
| Hpy188I | TCNGA | 2 cut(s) | 202, 299 |
| Hpy188III | TCNNGA | 1 cut(s) | 466 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 226, 291 |
| Hpy99I | CGWCG | 1 cut(s) | 472 |
| HpyAV | CCTTC | 2 cut(s) | 304, 523 |
| HpyCH4III | ACNGT | 3 cut(s) | 16, 59, 77 |
| HpyCH4IV | ACGT | 1 cut(s) | 232 |
| HpyCH4V | TGCA | 3 cut(s) | 184, 262, 291 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 38, 203, 400 |
| HpySE526I | ACGT | 1 cut(s) | 232 |
| Hsp92I | GRCGYC | 1 cut(s) | 315 |
| Hsp92II | CATG | 4 cut(s) | 36, 124, 242, 322 |
| HspAI | GCGC | 1 cut(s) | 211 |
| Ksp22I | TGATCA | 1 cut(s) | 517 |
| Kzo9I | GATC | 2 cut(s) | 284, 517 |
| LmnI | GCTCC | 4 cut(s) | 29, 299, 366, 391 |
| LpnPI | CCDG | 5 cut(s) | 33, 228, 292, 389, 459 |
| Lsp1109I | GCAGC | 3 cut(s) | 97, 163, 345 |
| LweI | GCATC | 1 cut(s) | 206 |
| MaeI | CTAG | 1 cut(s) | 550 |
| MaeII | ACGT | 1 cut(s) | 232 |
| MaeIII | GTNAC | 1 cut(s) | 53 |
| MalI | GATC | 2 cut(s) | 286, 519 |
| MboI | GATC | 2 cut(s) | 284, 517 |
| MboII | GAAGA | 3 cut(s) | 266, 280, 353 |
| MfeI | CAATTG | 2 cut(s) | 263, 537 |
| MhlI | GDGCHC | 2 cut(s) | 293, 396 |
| MluCI | AATT | 6 cut(s) | 257, 263, 328, 431, 521, 537 |
| MmeI | TCCRAC | 1 cut(s) | 7 |
| MnlI | CCTC | 4 cut(s) | 76, 128, 201, 228 |
| MseI | TTAA | 2 cut(s) | 425, 524 |
| MslI | CAYNNNNRTG | 1 cut(s) | 243 |
| MspCI | CTTAAG | 1 cut(s) | 424 |
| MspI | CCGG | 1 cut(s) | 20 |
| MunI | CAATTG | 2 cut(s) | 263, 537 |
| MvnI | CGCG | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 38, 203, 400 |
| NdeII | GATC | 2 cut(s) | 284, 517 |
| NlaIII | CATG | 4 cut(s) | 36, 124, 242, 322 |
| NlaIV | GGNNCC | 2 cut(s) | 301, 393 |
| NmeAIII | GCCGAG | 1 cut(s) | 314 |
| NmuCI | GTSAC | 1 cut(s) | 53 |
| NspI | RCATGY | 2 cut(s) | 36, 242 |
| PaeI | GCATGC | 1 cut(s) | 242 |
| PaeR7I | CTCGAG | 1 cut(s) | 219 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 157 |
| PfeI | GAWTC | 1 cut(s) | 66 |
| PflFI | GACNNNGTC | 1 cut(s) | 461 |
| PkrI | GCNGC | 3 cut(s) | 112, 178, 360 |
| PspFI | CCCAGC | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 2 cut(s) | 301, 393 |
| PspXI | VCTCGAGB | 1 cut(s) | 219 |
| PsyI | GACNNNGTC | 1 cut(s) | 461 |
| RsaI | GTAC | 1 cut(s) | 61 |
| RsaNI | GTAC | 1 cut(s) | 60 |
| RseI | CAYNNNNRTG | 1 cut(s) | 243 |
| SaqAI | TTAA | 2 cut(s) | 425, 524 |
| SatI | GCNGC | 3 cut(s) | 111, 177, 359 |
| Sau3AI | GATC | 2 cut(s) | 284, 517 |
| SduI | GDGCHC | 2 cut(s) | 293, 396 |
| SetI | ASST | 9 cut(s) | 167, 193, 208, 235, 276, 296, 360, 449, 488 |
| SfaNI | GCATC | 1 cut(s) | 206 |
| Sfr274I | CTCGAG | 1 cut(s) | 219 |
| SlaI | CTCGAG | 1 cut(s) | 219 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 243 |
| SmlI | CTYRAG | 2 cut(s) | 219, 424 |
| SmoI | CTYRAG | 2 cut(s) | 219, 424 |
| SphI | GCATGC | 1 cut(s) | 242 |
| Sse9I | AATT | 6 cut(s) | 257, 263, 328, 431, 521, 537 |
| SsiI | CCGC | 3 cut(s) | 179, 338, 376 |
| SspMI | CTAG | 1 cut(s) | 550 |
| StyI | CCWWGG | 1 cut(s) | 303 |
| TaaI | ACNGT | 3 cut(s) | 16, 59, 77 |
| TaiI | ACGT | 1 cut(s) | 235 |
| TaqI | TCGA | 4 cut(s) | 69, 220, 350, 439 |
| TasI | AATT | 6 cut(s) | 257, 263, 328, 431, 521, 537 |
| TfiI | GAWTC | 1 cut(s) | 66 |
| Tru1I | TTAA | 2 cut(s) | 425, 524 |
| Tru9I | TTAA | 2 cut(s) | 425, 524 |
| TscAI | CASTG | 1 cut(s) | 21 |
| TseFI | GTSAC | 1 cut(s) | 53 |
| TseI | GCWGC | 3 cut(s) | 110, 176, 358 |
| Tsp45I | GTSAC | 1 cut(s) | 53 |
| TspDTI | ATGAA | 2 cut(s) | 368, 512 |
| TspGWI | ACGGA | 2 cut(s) | 243, 353 |
| TspRI | CASTG | 1 cut(s) | 21 |
| Tth111I | GACNNNGTC | 1 cut(s) | 461 |
| Vha464I | CTTAAG | 1 cut(s) | 424 |
| VneI | GTGCAC | 1 cut(s) | 289 |
| XceI | RCATGY | 2 cut(s) | 36, 242 |
| XhoI | CTCGAG | 1 cut(s) | 219 |
| XspI | CTAG | 1 cut(s) | 550 |