Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006173.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

142926 .. 143336

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006173.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ctgtggatcttgcaccttggagctaagggaatcaacgccgtgttggaaaattgctcggtgctggaagagttatctgtgaagcggctccgtggtattgggtcggacgagtatgcgatggagcctattaggccaggcatttatgcttcgtcgctcaagacaatttgcttgaaagagctttacaatggacaatgtcctgactggtggaagtcaaaccgtgtgggagatgaaggtttgattttagtggccaagagtttccccaaccttcaggaattggttcttattgacgtgaacccaaccaaagcgagcttggaaacgttggcaacgaattgtcccaatctggagaggttggcattgtgcgggagcaataatatgtttattagtggcaataatatcattattgtggggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

136

Amino Acids

14.93

Weight (kDa)

5.39

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 357
AclI	AACGTT	1 cut(s)	314
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	23, 175, 306
AluI	AGCT	3 cut(s)	23, 175, 306
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	128, 243
Asp700I	GAANNNNTTC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	245
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	132
BmgBI	CACGTC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	86, 120
BmrFI	CCNGG	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	16, 88
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	16, 88
BseNI	ACTGG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	130, 245
BslFI	GGGAC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	130, 245
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	82, 357
BspANI	GGCC	2 cut(s)	130, 245
BspLI	GGNNCC	2 cut(s)	86, 120
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	16, 88
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	130, 245
BtgI	CCRYGG	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviJI	RGCY	7 cut(s)	23, 85, 121, 130, 175, 245, 306
CviKI_1	RGCY	7 cut(s)	23, 85, 121, 130, 175, 245, 306
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaiI	YATR	3 cut(s)	111, 141, 371
FaqI	GGGAC	1 cut(s)	315
FauI	CCCGC	1 cut(s)	350
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	130, 245
HinfI	GANTC	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	4 cut(s)	154, 194, 266, 338
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	221, 272
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	285, 314
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	2 cut(s)	285, 314
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	4 cut(s)	20, 90, 118, 360
LpnPI	CCDG	7 cut(s)	47, 117, 144, 184, 207, 251, 323
MaeII	ACGT	2 cut(s)	285, 314
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	1 cut(s)	6
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	4 cut(s)	49, 159, 269, 325
MluNI	TGGCCA	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	24, 81
MnlI	CCTC	1 cut(s)	336
Mox20I	TGGCCA	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	6
NlaIV	GGNNCC	2 cut(s)	86, 120
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	86, 120
PsuI	RGATCY	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	398
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	9 cut(s)	18, 25, 177, 232, 264, 288, 308, 317, 347
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	49, 159, 269, 325
SsiI	CCGC	2 cut(s)	82, 357
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	2 cut(s)	288, 317
TasI	AATT	4 cut(s)	49, 159, 269, 325
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	77
Tth111I	GACNNNGTC	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.