Rh6DG193900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006424
Physical Location & Seq
Forward (+)
34721460 .. 34722023
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG193900.1

Sequence Viewer

Length: 564 bp
ATGCCAATTTACGTTGGACACCCAACCTCTTCCTTGGCACGTCACCGCCAGACCAACAATCCAGCCAACGCCCCAGCATGCCAGCACGCCAGCGGCAAGTGCCAGCATCAGCGCCACCACAACGCAAGATCCGCACCGCCAACAACCCCTACCCCTAGTGTTCAAATGAGTCTAACTCCAAACATTAGCGTTAATATGGCAAGCAGGCCTAGCGGTTCGCTTGTCACCCATCATCTTTCGCTCGTCACCCAACGGTTCTTAACTCTTGCCTGTCGCCGACAAACGTCAAGCATCAGCTCCAGCACTGAAAACCTAGCCCTAGTGGCTAACGCTTCGCCAAGCGTGTACATCGGTCGTCTTCCTCTAGCGGGTCTAGCCCCAGCGGCTAATTCTATGCCAAGCGGGTCCAGCGGTCGTCTTCCTCTAGCGGGTCCAGCCCTAGCGGCTAACGCTCTGCCAAGTGTGTCTAGCGGTCGTCTTCCTCTAGCGGGTCCAGCCCCAGTGGCTAACGCTCCTCCAACAGCAGCGACGCCACTGCATACCAAAAATCTCTTCACACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

19.2

Weight (kDa)

11.77

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 530
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 368, 428, 488
AgsI TTSAA 1 cut(s) 164
AjiI CACGTC 1 cut(s) 41
AjuI GAANNNNNNNTTGG 1 cut(s) 536
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
AlwI GGATC 1 cut(s) 123
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 524
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 3 cut(s) 405, 431, 491
AsuHPI GGTGA 3 cut(s) 35, 217, 238
AvaII GGWCC 3 cut(s) 405, 431, 491
BbsI GAAGAC 3 cut(s) 350, 410, 470
BbvI GCAGC 1 cut(s) 536
BccI CCATC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BfoI RGCGCY 1 cut(s) 115
BglI GCCNNNNNGGC 4 cut(s) 323, 383, 443, 503
BisI GCNGC 4 cut(s) 94, 384, 444, 525
BlsI GCNGC 4 cut(s) 95, 385, 445, 526
Bme18I GGWCC 3 cut(s) 405, 431, 491
BmgBI CACGTC 1 cut(s) 41
BmgT120I GGNCC 3 cut(s) 405, 431, 491
BmiI GGNNCC 3 cut(s) 406, 432, 492
BmrI ACTGGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 115, 300
BmuI ACTGGG 1 cut(s) 494
BoxI GACNNNNGTC 1 cut(s) 283
BpiI GAAGAC 3 cut(s) 350, 410, 470
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BpmI CTGGAG 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 3 cut(s) 368, 428, 488
Bse1I ACTGG 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 33
BseLI CCNNNNNNNGG 3 cut(s) 368, 428, 488
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 504
BseXI GCAGC 1 cut(s) 536
BseYI CCCAGC 2 cut(s) 73, 379
Bsh1285I CGRYCG 3 cut(s) 355, 415, 475
BshFI GGCC 1 cut(s) 208
BsiEI CGRYCG 3 cut(s) 355, 415, 475
BslI CCNNNNNNNGG 3 cut(s) 368, 428, 488
BsnI GGCC 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 1 cut(s) 128
BspANI GGCC 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 406, 432, 492
BspPI GGATC 1 cut(s) 123
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 128
BssNI GRCGYC 1 cut(s) 530
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 2 cut(s) 34, 557
BstACI GRCGYC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 345
BstC8I GCNNGC 7 cut(s) 79, 83, 87, 91, 104, 202, 206
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMCI CGRYCG 3 cut(s) 355, 415, 475
BstNSI RCATGY 1 cut(s) 81
BstPAI GACNNNNGTC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 536
BstV2I GAAGAC 3 cut(s) 350, 410, 470
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 208
BtrI CACGTC 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 3 cut(s) 303, 507, 533
Cac8I GCNNGC 7 cut(s) 79, 83, 87, 91, 104, 202, 206
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 3 cut(s) 405, 431, 491
CseI GACGC 1 cut(s) 538
Csp6I GTAC 1 cut(s) 346
CviAII CATG 1 cut(s) 78
CviQI GTAC 1 cut(s) 346
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eam1104I CTCTTC 2 cut(s) 34, 557
EarI CTCTTC 2 cut(s) 34, 557
Eco130I CCWWGG 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 208
Eco47I GGWCC 3 cut(s) 405, 431, 491
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 81
FaiI YATR 4 cut(s) 79, 197, 395, 540
FatI CATG 1 cut(s) 77
FauI CCCGC 4 cut(s) 361, 395, 421, 481
Fnu4HI GCNGC 4 cut(s) 94, 384, 444, 525
Fsp4HI GCNGC 4 cut(s) 94, 384, 444, 525
GlaI GCGC 1 cut(s) 113
GluI GCNGC 4 cut(s) 94, 384, 444, 525
GsaI CCCAGC 2 cut(s) 77, 383
GsuI CTGGAG 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 208
HgaI GACGC 1 cut(s) 538
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 1 cut(s) 81
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 169
HphI GGTGA 3 cut(s) 35, 217, 238
Hpy166II GTNNAC 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 3 cut(s) 12, 40, 284
HpyCH4V TGCA 1 cut(s) 538
HpySE526I ACGT 3 cut(s) 12, 40, 284
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 1 cut(s) 81
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 2 cut(s) 302, 517
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 2 cut(s) 115, 300
MaeII ACGT 3 cut(s) 12, 40, 284
MaeIII GTNAC 3 cut(s) 41, 223, 244
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 5 cut(s) 21, 350, 410, 470, 544
MflI RGATCY 1 cut(s) 128
MluCI AATT 2 cut(s) 6, 388
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 5 cut(s) 37, 372, 432, 492, 525
MseI TTAA 2 cut(s) 192, 260
MspA1I CMGCKG 3 cut(s) 93, 383, 411
NdeII GATC 1 cut(s) 128
NlaIII CATG 1 cut(s) 81
NlaIV GGNNCC 3 cut(s) 406, 432, 492
NmuCI GTSAC 3 cut(s) 41, 223, 244
NspI RCATGY 1 cut(s) 81
PaeI GCATGC 1 cut(s) 81
PceI AGGCCT 1 cut(s) 208
PkrI GCNGC 4 cut(s) 95, 385, 445, 526
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 283
PspFI CCCAGC 2 cut(s) 73, 379
PspN4I GGNNCC 3 cut(s) 406, 432, 492
PspPI GGNCC 3 cut(s) 405, 431, 491
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 2 cut(s) 192, 260
SatI GCNGC 4 cut(s) 94, 384, 444, 525
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 3 cut(s) 405, 431, 491
SchI GAGTC 1 cut(s) 178
SetI ASST 6 cut(s) 15, 29, 43, 287, 299, 315
SfaNI GCATC 2 cut(s) 115, 300
SinI GGWCC 3 cut(s) 405, 431, 491
SphI GCATGC 1 cut(s) 81
Sse9I AATT 2 cut(s) 6, 388
SseBI AGGCCT 1 cut(s) 208
StuI AGGCCT 1 cut(s) 208
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 3 cut(s) 15, 43, 287
TaqII GACCGA 1 cut(s) 341
TasI AATT 2 cut(s) 6, 388
TatI WGTACW 1 cut(s) 345
TauI GCSGC 3 cut(s) 96, 386, 446
Tru1I TTAA 2 cut(s) 192, 260
Tru9I TTAA 2 cut(s) 192, 260
TscAI CASTG 3 cut(s) 310, 507, 540
TseFI GTSAC 3 cut(s) 41, 223, 244
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 3 cut(s) 41, 223, 244
TspRI CASTG 3 cut(s) 310, 507, 540
VpaK11BI GGWCC 3 cut(s) 405, 431, 491
XceI RCATGY 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.