Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000278.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

73943 .. 75062

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000278.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgtcggaaatcagactccagaccaccagcttctcgtctccgtcgtctgcctttttcaacaaccaccatagccactaccaccacaccgactaccaccaccaccgttccgcttcaccgacacatatcaatctctacacctccagtactctatctctagcttttcgcttctccatcgagcactattccatctccccaaaccgatccatcaccacttccaagaagaacggcccgatcgcggcggctaggaagatgtgtatgtgctcgccgacgaatcatccaaacttgtttcattgcagatctgccatgacgaactcgttggttcgaataagtggagtcgaggggggagtgggtgaagagagccttcacggctctattcgtccttctacgcaccagcagaggcagagaactggttgccggaatccggtcaccagcccggcaatcggattcgagattctggtcatcggttgccggaatcctgtcactggttgccggagtctggtcaccggccactggagaccgcggcctgccacaggtcaccggagcacagcaaggtggatgatgacttctctctctaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.36

Weight (kDa)

10.62

Isoelectric Point (pI)

68.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	236, 520
AciI	CCGC	5 cut(s)	108, 236, 239, 518, 520
AclWI	GGATC	1 cut(s)	195
AcoI	YGGCCR	1 cut(s)	505
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	7 cut(s)	235, 421, 440, 482, 496, 510, 530
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	2 cut(s)	30, 158
AluI	AGCT	2 cut(s)	30, 158
Alw21I	GWGCWC	3 cut(s)	180, 263, 545
Alw26I	GTCTC	2 cut(s)	42, 508
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	3 cut(s)	226, 505, 521
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	6 cut(s)	105, 199, 362, 418, 493, 527
AsuII	TTCGAA	1 cut(s)	322
Bbv12I	GWGCWC	3 cut(s)	180, 263, 545
BccI	CCATC	3 cut(s)	179, 194, 212
BceAI	ACGGC	2 cut(s)	241, 382
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	42, 508
BfaI	CTAG	2 cut(s)	155, 243
BglI	GCCNNNNNGGC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	3 cut(s)	237, 240, 521
BlsI	GCNGC	3 cut(s)	238, 241, 522
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	434
BpmI	CTGGAG	2 cut(s)	124, 532
Bpu14I	TTCGAA	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	518
BsaWI	WCCGGW	2 cut(s)	421, 537
Bsc4I	CCNNNNNNNGG	7 cut(s)	235, 421, 440, 482, 496, 510, 530
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	4 cut(s)	141, 412, 487, 515
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	2 cut(s)	274, 561
BseLI	CCNNNNNNNGG	7 cut(s)	235, 421, 440, 482, 496, 510, 530
BseMI	GCAATG	1 cut(s)	289
BseNI	ACTGG	4 cut(s)	141, 412, 487, 515
Bsh1236I	CGCG	2 cut(s)	236, 520
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	228, 507, 523
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	3 cut(s)	180, 263, 545
BsiSI	CCGG	7 cut(s)	415, 422, 434, 469, 490, 504, 538
BslI	CCNNNNNNNGG	7 cut(s)	235, 421, 440, 482, 496, 510, 530
BsmAI	GTCTC	2 cut(s)	42, 508
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	228, 507, 523
Bso31I	GGTCTC	1 cut(s)	508
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	3 cut(s)	180, 263, 545
Bsp143I	GATC	3 cut(s)	200, 231, 296
BspACI	CCGC	5 cut(s)	108, 236, 239, 518, 520
BspANI	GGCC	3 cut(s)	228, 507, 523
BspFNI	CGCG	2 cut(s)	236, 520
BspPI	GGATC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	4 cut(s)	141, 412, 487, 515
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	3 cut(s)	200, 231, 296
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	263, 525
BstDEI	CTNAG	1 cut(s)	573
BstDSI	CCRYGG	1 cut(s)	518
BstEII	GGTNACC	3 cut(s)	424, 499, 533
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	274, 561
BstFNI	CGCG	2 cut(s)	236, 520
BstKTI	GATC	3 cut(s)	203, 234, 299
BstMAI	GTCTC	2 cut(s)	42, 508
BstMBI	GATC	3 cut(s)	200, 231, 296
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstPI	GGTNACC	3 cut(s)	424, 499, 533
BstSCI	CCNGG	1 cut(s)	432
BstUI	CGCG	2 cut(s)	236, 520
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	3 cut(s)	228, 507, 523
BtgI	CCRYGG	1 cut(s)	518
BtsCI	GGATG	2 cut(s)	274, 561
BtsIMutI	CAGTG	2 cut(s)	480, 508
Cac8I	GCNNGC	2 cut(s)	263, 525
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	227
Cfr42I	CCGCGG	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	3 cut(s)	202, 233, 298
DpnII	GATC	3 cut(s)	200, 231, 296
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	508
Eco91I	GGTNACC	3 cut(s)	424, 499, 533
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoO65I	GGTNACC	3 cut(s)	424, 499, 533
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	69, 123, 257, 305
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	237, 240, 521
FokI	GGATG	2 cut(s)	261, 568
Fsp4HI	GCNGC	3 cut(s)	237, 240, 521
FspBI	CTAG	2 cut(s)	155, 243
GluI	GCNGC	3 cut(s)	237, 240, 521
GsuI	CTGGAG	2 cut(s)	124, 532
HaeIII	GGCC	3 cut(s)	228, 507, 523
HapII	CCGG	7 cut(s)	415, 422, 434, 469, 490, 504, 538
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	8 cut(s)	15, 271, 333, 418, 444, 451, 472, 493
HpaII	CCGG	7 cut(s)	415, 422, 434, 469, 490, 504, 538
HphI	GGTGA	6 cut(s)	105, 199, 362, 418, 493, 527
Hpy188I	TCNGA	3 cut(s)	7, 14, 443
Hpy188III	TCNNGA	2 cut(s)	19, 448
Hpy99I	CGWCG	2 cut(s)	46, 271
HpyAV	CCTTC	2 cut(s)	371, 390
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	1 cut(s)	573
Hsp92II	CATG	1 cut(s)	307
KspI	CCGCGG	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	200, 231, 296
LmnI	GCTCC	1 cut(s)	540
MaeI	CTAG	2 cut(s)	155, 243
MaeIII	GTNAC	4 cut(s)	424, 478, 499, 533
MalI	GATC	3 cut(s)	202, 233, 298
MboI	GATC	3 cut(s)	200, 231, 296
MboII	GAAGA	3 cut(s)	232, 259, 365
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	3 cut(s)	180, 263, 545
MlyI	GAGTC	3 cut(s)	9, 342, 502
MnlI	CCTC	3 cut(s)	148, 331, 390
MspA1I	CMGCKG	1 cut(s)	520
MspI	CCGG	7 cut(s)	415, 422, 434, 469, 490, 504, 538
MspR9I	CCNGG	1 cut(s)	434
MvnI	CGCG	2 cut(s)	236, 520
MwoI	GCNNNNNNNGC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	3 cut(s)	200, 231, 296
NlaIII	CATG	1 cut(s)	307
NmuCI	GTSAC	4 cut(s)	424, 478, 499, 533
NspV	TTCGAA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	5 cut(s)	271, 418, 444, 451, 472
PkrI	GCNGC	3 cut(s)	238, 241, 522
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	3 cut(s)	9, 341, 501
PpsI	GAGTC	3 cut(s)	9, 341, 501
PspEI	GGTNACC	3 cut(s)	424, 499, 533
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacII	CCGCGG	1 cut(s)	521
SatI	GCNGC	3 cut(s)	237, 240, 521
Sau3AI	GATC	3 cut(s)	200, 231, 296
Sau96I	GGNCC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	3 cut(s)	9, 342, 502
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	3 cut(s)	180, 263, 545
SetI	ASST	5 cut(s)	32, 140, 160, 535, 554
Sfr303I	CCGCGG	1 cut(s)	521
SfuI	TTCGAA	1 cut(s)	322
SgrBI	CCGCGG	1 cut(s)	521
SsiI	CCGC	5 cut(s)	108, 236, 239, 518, 520
SspMI	CTAG	2 cut(s)	155, 243
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	4 cut(s)	174, 322, 336, 447
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	3 cut(s)	239, 242, 523
TfiI	GAWTC	5 cut(s)	271, 418, 444, 451, 472
TscAI	CASTG	2 cut(s)	487, 515
TseFI	GTSAC	4 cut(s)	424, 478, 499, 533
Tsp45I	GTSAC	4 cut(s)	424, 478, 499, 533
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	487, 515
XagI	CCTNNNNNAGG	1 cut(s)	528
XspI	CTAG	2 cut(s)	155, 243
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.