Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

67212994 .. 67216105

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG481900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGGCGTTCGCTCAGAATTCTACTGGATTGAAGAAGCTCTCCGTCGGGTCGTGCTTGTTCGGCGCCAAGGCCATGAACGCCGTGCTTGAGTACTGCACGGCGCTCGAGGAGCTATCGGTGAAGCGGCTCCGGGGGATCCACGACGCGTCTGCAATGGGTCTCGGGCCTCACCCATTGAAGTCAGAGAAGGGAGATCCGCAACCGTCGAAGTCAATGATGGGAGGAGAAGAAGAAGGTCTGACTCTAAACATTGGCGTTAATATCGCAAGCAGGCCTAGTGGTTCGCTCGTCACCCAGCACCTGTCGCTCATCACCCAGCGGTTCTTGACTCGCCTGTGGACTACAAACGTCAAGCATCAGTTCCAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

124

Amino Acids

13.38

Weight (kDa)

9.34

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	1 cut(s)	149
AciI	CCGC	4 cut(s)	5, 127, 200, 322
AclWI	GGATC	3 cut(s)	133, 146, 191
AcsI	RAATTY	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	34, 181
AluBI	AGCT	2 cut(s)	40, 115
AluI	AGCT	2 cut(s)	40, 115
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	133, 146, 191
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	2 cut(s)	107, 164
AoxI	GGCC	3 cut(s)	72, 167, 275
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	68, 106
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	133, 164, 286, 307
AvaI	CYCGRG	2 cut(s)	107, 164
BamHI	GGATCC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	65
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	2 cut(s)	68, 117
BcgI	CGANNNNNNTGC	4 cut(s)	88, 122, 134, 168
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	279
BfoI	RGCGCY	2 cut(s)	69, 107
BisI	GCNGC	2 cut(s)	6, 128
BlsI	GCNGC	2 cut(s)	7, 129
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	134
BmeT110I	CYCGRG	2 cut(s)	107, 164
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	3 cut(s)	67, 131, 140
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	69, 133
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	69, 133
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	125, 240
BseYI	CCCAGC	2 cut(s)	297, 318
BsgI	GTGCAG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	74, 169, 277
BshNI	GGYRCC	1 cut(s)	65
BsiHKCI	CYCGRG	2 cut(s)	107, 164
BsiSI	CCGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	74, 169, 277
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	2 cut(s)	107, 164
Bsp143I	GATC	2 cut(s)	138, 196
BspACI	CCGC	4 cut(s)	5, 127, 200, 322
BspANI	GGCC	3 cut(s)	74, 169, 277
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	3 cut(s)	67, 131, 140
BspPI	GGATC	3 cut(s)	133, 146, 191
BspT107I	GGYRCC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	69, 133
BssMI	GATC	2 cut(s)	138, 196
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	271, 275
BstDEI	CTNAG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	2 cut(s)	69, 107
BstHHI	GCGC	2 cut(s)	68, 106
BstKTI	GATC	2 cut(s)	141, 199
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	138, 196
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 63, 80, 112, 307
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	138, 196
BstYI	RGATCY	2 cut(s)	138, 196
BsuRI	GGCC	3 cut(s)	74, 169, 277
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	271, 275
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	2 cut(s)	68, 106
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	2 cut(s)	138, 155
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	6 cut(s)	40, 74, 115, 130, 169, 277
CviKI_1	RGCY	6 cut(s)	40, 74, 115, 130, 169, 277
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	15
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	2 cut(s)	140, 198
DpnII	GATC	2 cut(s)	138, 196
Eco130I	CCWWGG	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	167
Eco88I	CYCGRG	2 cut(s)	107, 164
EcoRI	GAATTC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	6, 128
Fsp4HI	GCNGC	2 cut(s)	6, 128
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	2 cut(s)	67, 105
GluI	GCNGC	2 cut(s)	6, 128
GsaI	CCCAGC	2 cut(s)	301, 322
HaeII	RGCGCY	2 cut(s)	69, 107
HaeIII	GGCC	3 cut(s)	74, 169, 277
HapII	CCGG	1 cut(s)	133
HgaI	GACGC	2 cut(s)	138, 155
HhaI	GCGC	2 cut(s)	68, 106
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	2 cut(s)	66, 104
HinP1I	GCGC	2 cut(s)	66, 104
HinfI	GANTC	2 cut(s)	244, 331
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	4 cut(s)	133, 164, 286, 307
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	3 cut(s)	18, 187, 243
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	3 cut(s)	50, 149, 211
HpyAV	CCTTC	2 cut(s)	184, 230
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	99, 155
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 63, 80, 112, 307
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	2 cut(s)	66, 104
KasI	GGCGCC	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	138, 196
LmnI	GCTCC	2 cut(s)	112, 135
LpnPI	CCDG	7 cut(s)	12, 146, 259, 311, 317, 332, 350
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	140, 198
MboI	GATC	2 cut(s)	138, 196
MboII	GAAGA	3 cut(s)	46, 242, 245
MflI	RGATCY	2 cut(s)	138, 196
MluCI	AATT	1 cut(s)	19
MluI	ACGCGT	1 cut(s)	147
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	238, 325
MnlI	CCTC	3 cut(s)	103, 180, 218
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	11, 63, 80, 112, 307
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	138, 196
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	67, 131, 140
NmuCI	GTSAC	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	7, 129
PleI	GAGTC	2 cut(s)	238, 325
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	2 cut(s)	238, 325
PspFI	CCCAGC	2 cut(s)	297, 318
PspN4I	GGNNCC	3 cut(s)	67, 131, 140
PspPI	GGNCC	1 cut(s)	167
PspXI	VCTCGAGB	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	138, 196
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	6, 128
Sau3AI	GATC	2 cut(s)	138, 196
Sau96I	GGNCC	1 cut(s)	167
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	238, 325
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	5 cut(s)	42, 117, 241, 306, 354
SfaNI	GCATC	1 cut(s)	367
SfoI	GGCGCC	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	89, 107
SmoI	CTYRAG	2 cut(s)	89, 107
Sse9I	AATT	1 cut(s)	19
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	4 cut(s)	5, 127, 200, 322
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	108, 209
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	2 cut(s)	8, 130
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	34
XapI	RAATTY	1 cut(s)	19
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.