RLG00000029797

cwf21 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002497
Physical Location & Seq
Forward (+)
49339593 .. 49340589
997 bp
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UTR
Exon/CDS
Intron
RLM00000029797

Sequence Viewer

Length: 498 bp
ATGGAAAGGAGAAGTAGCCAAGTTGAGCAGCAAAGGAATCAGCAGGTCAGCCACAGGGTAGATCGAGATGATTTTGATGTGGAGAAGGCCGATAATGTTAGAAGTGGAAAAAGCATAAAATCGTATGATAGTGGTTCTTTTTCTGACTATGAAAGATCCAGAAAAAGTAGAGGTGCAATAACAAAAAAAAGTAGAAGAAGTGGCGGGAATGATACTAATGATGATGATACTAATATTGGGAGGAAACCTGCAAGGATTGAAGAGGGTGATGGAGGACGTGGAAGGCACAACAAGAGTGAACTGCAAAGAGGAAGGAAAAATGAAAGAGATGAAGAGGATCATGATTATAGAAGGTTACATAGCCTCAGAGCTTTTGTAAGTGAATCAAGTCGTGTACTGTTGAGAGTTGCACTTCGTGCCCCTGGTGGCAAAGATGGAGTTGTGGATGAGTGTATCGTTGGCATATTGAATTCTACTGTTTTTCTTTGGTCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
cwf21

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

9.51

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 34, 256
AciI CCGC 1 cut(s) 204
AclWI GGATC 2 cut(s) 150, 345
AcsI RAATTY 1 cut(s) 469
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 1 cut(s) 396
AgsI TTSAA 2 cut(s) 260, 469
AjiI CACGTC 1 cut(s) 278
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
AlwI GGATC 2 cut(s) 150, 345
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 263, 428
BciT130I CCWGG 1 cut(s) 423
BfuAI ACCTGC 2 cut(s) 34, 256
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 423
BmgBI CACGTC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 421
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 379
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 89
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 3 cut(s) 61, 155, 337
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 340
BspMI ACCTGC 2 cut(s) 34, 256
BspPI GGATC 2 cut(s) 150, 345
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 3 cut(s) 61, 155, 337
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 399, 478
Bst6I CTCTTC 2 cut(s) 255, 327
BstAPI GCANNNNNTGC 1 cut(s) 416
BstDEI CTNAG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 3 cut(s) 64, 158, 340
BstMBI GATC 3 cut(s) 61, 155, 337
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 1 cut(s) 89
BtrI CACGTC 1 cut(s) 278
BtsCI GGATG 1 cut(s) 451
BveI ACCTGC 2 cut(s) 34, 256
CciI TCATGA 1 cut(s) 340
Csp6I GTAC 1 cut(s) 395
CviAII CATG 1 cut(s) 341
CviJI RGCY 5 cut(s) 18, 51, 89, 363, 371
CviKI_1 RGCY 5 cut(s) 18, 51, 89, 363, 371
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 1 cut(s) 365
DpnI GATC 3 cut(s) 63, 157, 339
DpnII GATC 3 cut(s) 61, 155, 337
DraIII CACNNNGTG 1 cut(s) 416
Eam1104I CTCTTC 2 cut(s) 255, 327
EarI CTCTTC 2 cut(s) 255, 327
EcoRI GAATTC 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 421
FaeI CATG 1 cut(s) 344
FaiI YATR 8 cut(s) 116, 126, 150, 342, 348, 360, 464, 496
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 89
Hin1II CATG 1 cut(s) 344
HinfI GANTC 2 cut(s) 37, 383
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 299, 395
Hpy188I TCNGA 2 cut(s) 145, 368
Hpy188III TCNNGA 3 cut(s) 65, 159, 341
Hpy8I GTNNAC 2 cut(s) 299, 395
HpyAV CCTTC 4 cut(s) 79, 276, 306, 345
HpyCH4III ACNGT 2 cut(s) 399, 478
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 176, 251, 304, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 344
Kzo9I GATC 3 cut(s) 61, 155, 337
LpnPI CCDG 6 cut(s) 29, 40, 172, 261, 408, 435
Lsp1109I GCAGC 1 cut(s) 40
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 354
MalI GATC 3 cut(s) 63, 157, 339
MboI GATC 3 cut(s) 61, 155, 337
MboII GAAGA 3 cut(s) 207, 272, 344
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 1 cut(s) 469
MnlI CCTC 7 cut(s) 164, 234, 256, 266, 302, 328, 374
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeII GATC 3 cut(s) 61, 155, 337
NlaIII CATG 1 cut(s) 344
PagI TCATGA 1 cut(s) 340
PfeI GAWTC 2 cut(s) 37, 383
PkrI GCNGC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 61, 155, 337
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 421
SetI ASST 6 cut(s) 48, 175, 250, 280, 356, 373
Sse9I AATT 1 cut(s) 469
SsiI CCGC 1 cut(s) 204
SspI AATATT 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 399, 478
TaiI ACGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 469
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 2 cut(s) 37, 383
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 165, 336, 345
XapI RAATTY 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.