Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002497

Physical Location & Seq

Genomic Coordinates Reverse (-)

18679190 .. 18688960

Gene Structure 9771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG107900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCAGAGTGCTTCAAAATTTCCAATCTCTGGACACCGAGAGGGTCCGGAACCAGTGGCTATATCCAGACAAACAAGTTCTTCATCAAATCCAAGACCGGCAAGGTCGCCGCCGAGAACTCCAGAGGCTTCGAGGGCGACCAGGGCATGGCCAAGAAGCCCAACAAAGACATCCTTCTCAAGCGCCAGATTGAGCTCCATCTTGTTGTCCTCGAGGACAATTTCACCGATCAGGGCTTCACCAACGTTGAGATTGCTGACAAGGTCGCCCAGGCCAGGAGGACTCTGGAAGCCGCCGCCGCCGCCTCCAAGGACCTTTGTTCTTGGAGATAACAAAGAATCTGGGTGGAGGATAAGCAGAAGGTTGAGAAAGATATATAGGAAAAGGAGCATTAAAGAATCTAGGAGGAACAAAAAGAAAGAAAGTGGGAAGATAACGAATAAAGATGATTCTTCTGATACAGATAGCAGTGGTAGCCCTCCAAAACCTGATAAAAAGAAAAGGCGTCGGAGTAGAAGCAGCAGCAGTGACAAAGATGATTATGAAGTTAATACATCGAAAAACAAAGTTGAGAAATACAAAAAAAAAGGGCAGCAGAGGTATGATTCAGAAGAAGATGATTCTGAAGTTGATGTTGACAAGAAGCAGAAGGTTGAAAAGAAGCATAGTAAAAGCCGAAACAAATTTTCTGTTACCAGTGGTGATGTGGAGGCCAGATCCAGAAAGGAAATTAAGAAATCTAAACGACCCCGTAGGAGGCATGATTCAGATGAAGATGATGTTGACAAGAAGAGGAAGGTTGTAATGAAGCATAATAAGACTAGAAACGATGATACTGATGATGATTCTGCTGCCAGTGAAGATGCCGAGGATAGATCCACAAAGGAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.87

Weight (kDa)

10.38

Isoelectric Point (pI)

85.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49601
fragaria_vesca	FvH4_2g30620 FvH4_2g30620 FvH4_2g30620 FvH4_2g30620 FvH4_2g30620
malus_domestica	MD08G1133100.v1.1 MD15G1110900.v1.1 MD15G1111000.v1.1 MD15G1111100.v1.1
prunus_persica	Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0410401 RchiOBHm_Chr6g0312381
rosa_laevigata	RLG00000029779 RLG00000029782 RLG00000029786 RLG00000029787 RLG00000029792 RLG00000029797 RLG00000029803
rosa_multiflora	Rmu_co8494335.1_g000001 Rmu_ssc0000424.1_g000020 Rmu_ssc0000424.1_g000021
rosa_roxburghii	Rroxscaffold_5G00355210 Rroxscaffold_7G00156850
rosa_rugosa	Rorug01G0090000 Rorug04G0102300 Rorug06G0395200 Rorug06G0395300 Rorug06G0395400
rosa_samantha	Rh1AG107900 Rh4BG159600 Rh6AG512600 Rh6BG523500 Rh6CG528900 Rh6DG514800
rosa_wichuraiana	Rw6G044550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	211
AccB7I	CCANNNNNTGG	2 cut(s)	29, 147
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	5 cut(s)	110, 293, 296, 299, 302
AclI	AACGTT	1 cut(s)	245
AclWI	GGATC	2 cut(s)	711, 870
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	17, 683
AcuI	CTGAAG	1 cut(s)	645
AcyI	GRCGYC	1 cut(s)	505
AfiI	CCNNNNNNNGG	4 cut(s)	29, 147, 275, 756
AgsI	TTSAA	2 cut(s)	15, 656
AjnI	CCWGG	3 cut(s)	140, 269, 274
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw21I	GWGCWC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	711, 870
Ama87I	CYCGRG	1 cut(s)	211
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	3 cut(s)	149, 272, 711
ApeKI	GCWGC	4 cut(s)	519, 522, 592, 851
ApoI	RAATTY	2 cut(s)	17, 683
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	44, 312
AsuHPI	GGTGA	3 cut(s)	216, 231, 713
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	44, 312
BalI	TGGCCA	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	531, 534, 604, 838
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	3 cut(s)	142, 271, 276
BfaI	CTAG	3 cut(s)	402, 822, 892
BfoI	RGCGCY	1 cut(s)	186
BisI	GCNGC	9 cut(s)	110, 293, 296, 299, 302, 520, 523, 593, 852
BlsI	GCNGC	9 cut(s)	111, 294, 297, 300, 303, 521, 524, 594, 853
Bme1390I	CCNGG	3 cut(s)	142, 271, 276
Bme18I	GGWCC	2 cut(s)	44, 312
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	44, 312
BmiI	GGNNCC	2 cut(s)	45, 51
BmrFI	CCNGG	3 cut(s)	142, 271, 276
BmsI	GCATC	1 cut(s)	853
BpmI	CTGGAG	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	4 cut(s)	141, 269, 308, 867
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 147, 275, 756
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	3 cut(s)	53, 696, 855
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	3 cut(s)	142, 271, 276
BseDI	CCNNGG	4 cut(s)	141, 269, 308, 867
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	4 cut(s)	29, 147, 275, 756
BseNI	ACTGG	3 cut(s)	53, 696, 855
BseXI	GCAGC	4 cut(s)	531, 534, 604, 838
BshFI	GGCC	3 cut(s)	151, 274, 713
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	47, 98
BslI	CCNNNNNNNGG	4 cut(s)	29, 147, 275, 756
BsnI	GGCC	3 cut(s)	151, 274, 713
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	228, 716, 875
BspACI	CCGC	5 cut(s)	110, 293, 296, 299, 302
BspANI	GGCC	3 cut(s)	151, 274, 713
BspEI	TCCGGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	45, 51
BspPI	GGATC	2 cut(s)	711, 870
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	3 cut(s)	53, 696, 855
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	4 cut(s)	141, 269, 308, 867
BssMI	GATC	3 cut(s)	228, 716, 875
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	3 cut(s)	142, 271, 276
Bst6I	CTCTTC	1 cut(s)	785
BstACI	GRCGYC	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	3 cut(s)	231, 719, 878
BstMBI	GATC	3 cut(s)	228, 716, 875
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 143, 298, 301, 474
BstNI	CCWGG	3 cut(s)	142, 271, 276
BstSCI	CCNGG	3 cut(s)	140, 269, 274
BstV1I	GCAGC	4 cut(s)	531, 534, 604, 838
BstX2I	RGATCY	2 cut(s)	716, 875
BstYI	RGATCY	2 cut(s)	716, 875
BsuRI	GGCC	3 cut(s)	151, 274, 713
BtsCI	GGATG	1 cut(s)	170
BtsI	GCAGTG	2 cut(s)	475, 532
BtsIMutI	CAGTG	5 cut(s)	60, 475, 532, 703, 862
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	44, 312
CseI	GACGC	1 cut(s)	494
CviAII	CATG	2 cut(s)	147, 761
DpnI	GATC	3 cut(s)	230, 718, 877
DpnII	GATC	3 cut(s)	228, 716, 875
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	44, 312
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	312
EcoRII	CCWGG	3 cut(s)	140, 269, 274
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	150, 764
FaiI	YATR	9 cut(s)	62, 148, 376, 378, 543, 603, 666, 762, 813
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	2 cut(s)	146, 760
Fnu4HI	GCNGC	9 cut(s)	110, 293, 296, 299, 302, 520, 523, 593, 852
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	9 cut(s)	110, 293, 296, 299, 302, 520, 523, 593, 852
FspBI	CTAG	3 cut(s)	402, 822, 892
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	9 cut(s)	110, 293, 296, 299, 302, 520, 523, 593, 852
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	151, 274, 713
HapII	CCGG	2 cut(s)	47, 98
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	2 cut(s)	150, 764
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	2 cut(s)	637, 784
HindII	GTYRAC	2 cut(s)	637, 784
HinfI	GANTC	8 cut(s)	282, 338, 398, 449, 605, 620, 764, 845
HpaII	CCGG	2 cut(s)	47, 98
HphI	GGTGA	3 cut(s)	216, 231, 713
Hpy166II	GTNNAC	2 cut(s)	637, 784
Hpy188I	TCNGA	5 cut(s)	457, 510, 610, 625, 769
Hpy188III	TCNNGA	6 cut(s)	30, 47, 66, 122, 286, 720
Hpy8I	GTNNAC	2 cut(s)	637, 784
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	4 cut(s)	184, 354, 643, 790
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 143, 298, 301, 474
HpySE526I	ACGT	1 cut(s)	245
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	2 cut(s)	150, 764
HspAI	GCGC	1 cut(s)	183
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	228, 716, 875
LmnI	GCTCC	2 cut(s)	200, 387
Lsp1109I	GCAGC	4 cut(s)	531, 534, 604, 838
LweI	GCATC	1 cut(s)	853
MaeI	CTAG	3 cut(s)	402, 822, 892
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	527, 691
MalI	GATC	3 cut(s)	230, 718, 877
MboI	GATC	3 cut(s)	228, 716, 875
MboII	GAAGA	8 cut(s)	72, 442, 444, 623, 626, 785, 802, 872
MflI	RGATCY	2 cut(s)	716, 875
MhlI	GDGCHC	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	4 cut(s)	17, 219, 683, 729
MluNI	TGGCCA	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	488
Mox20I	TGGCCA	1 cut(s)	151
MroI	TCCGGA	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	3 cut(s)	393, 549, 732
Msp20I	TGGCCA	1 cut(s)	151
MspI	CCGG	2 cut(s)	47, 98
MspR9I	CCNGG	3 cut(s)	142, 271, 276
MvaI	CCWGG	3 cut(s)	142, 271, 276
MwoI	GCNNNNNNNGC	5 cut(s)	134, 143, 298, 301, 474
NdeII	GATC	3 cut(s)	228, 716, 875
NlaIII	CATG	2 cut(s)	150, 764
NlaIV	GGNNCC	2 cut(s)	45, 51
NmeAIII	GCCGAG	2 cut(s)	138, 892
NmuCI	GTSAC	1 cut(s)	527
PaeR7I	CTCGAG	1 cut(s)	211
PfeI	GAWTC	7 cut(s)	338, 398, 449, 605, 620, 764, 845
PflFI	GACNNNGTC	1 cut(s)	262
PflMI	CCANNNNNTGG	2 cut(s)	29, 147
PkrI	GCNGC	9 cut(s)	111, 294, 297, 300, 303, 521, 524, 594, 853
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	197
Psp1406I	AACGTT	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	312
Psp6I	CCWGG	3 cut(s)	140, 269, 274
PspGI	CCWGG	3 cut(s)	140, 269, 274
PspN4I	GGNNCC	2 cut(s)	45, 51
PspPI	GGNCC	2 cut(s)	44, 312
PspPPI	RGGWCCY	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	716, 875
PsyI	GACNNNGTC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	393, 549, 732
SatI	GCNGC	9 cut(s)	110, 293, 296, 299, 302, 520, 523, 593, 852
Sau3AI	GATC	3 cut(s)	228, 716, 875
Sau96I	GGNCC	2 cut(s)	44, 312
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	3 cut(s)	142, 271, 276
SduI	GDGCHC	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	853
Sfr274I	CTCGAG	1 cut(s)	211
SinI	GGWCC	2 cut(s)	44, 312
SlaI	CTCGAG	1 cut(s)	211
SmlI	CTYRAG	2 cut(s)	178, 211
SmoI	CTYRAG	2 cut(s)	178, 211
Sse9I	AATT	4 cut(s)	17, 219, 683, 729
SsiI	CCGC	5 cut(s)	110, 293, 296, 299, 302
SspMI	CTAG	3 cut(s)	402, 822, 892
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	140, 269, 274
StyI	CCWWGG	1 cut(s)	308
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	3 cut(s)	131, 212, 557
TasI	AATT	4 cut(s)	17, 219, 683, 729
TauI	GCSGC	5 cut(s)	112, 295, 298, 301, 304
TfiI	GAWTC	7 cut(s)	338, 398, 449, 605, 620, 764, 845
Tru1I	TTAA	3 cut(s)	393, 549, 732
Tru9I	TTAA	3 cut(s)	393, 549, 732
TscAI	CASTG	5 cut(s)	60, 475, 532, 703, 862
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	4 cut(s)	519, 522, 592, 851
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	4 cut(s)	72, 558, 786, 821
TspRI	CASTG	5 cut(s)	60, 475, 532, 703, 862
Tth111I	GACNNNGTC	1 cut(s)	262
Van91I	CCANNNNNTGG	2 cut(s)	29, 147
VpaK11BI	GGWCC	2 cut(s)	44, 312
XapI	RAATTY	2 cut(s)	17, 683
XcmI	CCANNNNNNNNNTGG	2 cut(s)	282, 703
XhoI	CTCGAG	1 cut(s)	211
XspI	CTAG	3 cut(s)	402, 822, 892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.