Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000424.1

Orthogroup ID

OG0002497

Physical Location & Seq

Genomic Coordinates Forward (+)

88921 .. 90322

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000424.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgtacaacggaatagggttacagactccaagagggtccggaaccaatggctatatccagacgaacaagttcttcatcaaatccaagaccggcaaggtcgccgagaactccagaggcttcgagggcgaccagggcatggccggcgtctccaagaagcccaacagagacatccttgagcatgatcgcaagcgccagattgagctcaagcttgtcgtcctcgaggacaagctcaccgatcagggtttcaccgacgctgagattgctgacaagctcgcccaggccagggcgactctcgaagccgccgccgcctccgaggacatgggtggacccactgcctttgttcttcttggagataacaaggtttcagatacacagacccaccaaattgctgctaggaagcagaagcagatggacaacttaagagatgctttgaaactaaaacctgaagctacagaaacaaatactgaggagatcgaggatggactaatcattagtccgaagaatgatggtagcaggcattatgagaggaaagagcattcgtttttggacagagaatctgggtggaagaaatctgtggaggataagcacaaggttgagaaagataagaaaaagagcgttaaagaatctaggaggaacaaaaagaaagaaagtaggaagagaaggcataaggatgattcttctgatacagatagcagtggtagccctctgaaacctgataaaaagaaaaagcgtccgagtacaagtagcagcagtgaagaagatgattctgaagttgatacatcgaaaaaggaagttgagaaatacaaaaaacggcagaagaggtacgattcagaagatgattctgaagttgatgttgacaagaagcggaaggttgtaaagaagcatagtaaaagccgaaacaataacactgatgattctgataccagtgatgatgcggaggccagatccaggaaggaaattaagaaatccaaacaacctcataggaggcatgattcagatgaagatgattctgaagatgatgttgacaagaagaggaaggttgtaaagaagcatagtaaaagcagaaacgatgataatgatgattctgctgccagtgaagatgtcgaggatagatccacaaaggaagtcaagaaattccaacaacctcgtaggctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

cwf21

Protein Analysis

385

Amino Acids

43.93

Weight (kDa)

9.14

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49601
fragaria_vesca	FvH4_2g30620 FvH4_2g30620 FvH4_2g30620 FvH4_2g30620 FvH4_2g30620
malus_domestica	MD08G1133100.v1.1 MD15G1110900.v1.1 MD15G1111000.v1.1 MD15G1111100.v1.1
prunus_persica	Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0410401 RchiOBHm_Chr6g0312381
rosa_laevigata	RLG00000029779 RLG00000029782 RLG00000029786 RLG00000029787 RLG00000029792 RLG00000029797 RLG00000029803
rosa_multiflora	Rmu_co8494335.1_g000001 Rmu_ssc0000424.1_g000020 Rmu_ssc0000424.1_g000021
rosa_roxburghii	Rroxscaffold_5G00355210 Rroxscaffold_7G00156850
rosa_rugosa	Rorug01G0090000 Rorug04G0102300 Rorug06G0395200 Rorug06G0395300 Rorug06G0395400
rosa_samantha	Rh1AG107900 Rh4BG159600 Rh6AG512600 Rh6BG523500 Rh6CG528900 Rh6DG514800
rosa_wichuraiana	Rw6G044550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	5 cut(s)	300, 303, 306, 865, 935
AclWI	GGATC	2 cut(s)	939, 1107
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	1133
AcuI	CTGAAG	4 cut(s)	465, 789, 864, 1032
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	3 cut(s)	5, 739, 824
AfiI	CCNNNNNNNGG	4 cut(s)	136, 282, 283, 948
AflII	CTTAAG	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	4 cut(s)	129, 276, 281, 947
AluBI	AGCT	5 cut(s)	202, 208, 229, 271, 449
AluI	AGCT	5 cut(s)	202, 208, 229, 271, 449
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	151, 159
AlwI	GGATC	2 cut(s)	939, 1107
Ama87I	CYCGRG	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	3 cut(s)	138, 279, 939
ApeKI	GCWGC	3 cut(s)	389, 747, 1088
ApoI	RAATTY	1 cut(s)	1133
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	36, 326
AsuHPI	GGTGA	2 cut(s)	223, 238
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	36, 326
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	376, 759, 1075
BccI	CCATC	3 cut(s)	403, 473, 500
BceAI	ACGGC	1 cut(s)	827
BciT130I	CCWGG	4 cut(s)	131, 278, 283, 949
BcoDI	GTCTC	2 cut(s)	151, 159
BfaI	CTAG	3 cut(s)	393, 627, 1156
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	418
BisI	GCNGC	6 cut(s)	300, 303, 306, 390, 748, 1089
BlsI	GCNGC	6 cut(s)	301, 304, 307, 391, 749, 1090
Bme1390I	CCNGG	4 cut(s)	131, 278, 283, 949
Bme18I	GGWCC	2 cut(s)	36, 326
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	36, 326
BmiI	GGNNCC	3 cut(s)	37, 43, 328
BmrFI	CCNGG	4 cut(s)	131, 278, 283, 949
BmsI	GCATC	2 cut(s)	415, 922
BpmI	CTGGAG	1 cut(s)	94
BpuEI	CTTGAG	2 cut(s)	188, 194
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	4 cut(s)	130, 276, 282, 312
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 282, 283, 948
Bse118I	RCCGGY	2 cut(s)	89, 140
Bse1I	ACTGG	2 cut(s)	924, 1092
BseAI	TCCGGA	1 cut(s)	38
BseBI	CCWGG	4 cut(s)	131, 278, 283, 949
BseDI	CCNNGG	4 cut(s)	130, 276, 282, 312
BseGI	GGATG	3 cut(s)	168, 484, 676
BseLI	CCNNNNNNNGG	4 cut(s)	136, 282, 283, 948
BseMII	CTCAG	2 cut(s)	246, 456
BseNI	ACTGG	2 cut(s)	924, 1092
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	376, 759, 1075
BshFI	GGCC	3 cut(s)	140, 281, 941
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	39, 90, 141
BslI	CCNNNNNNNGG	4 cut(s)	136, 282, 283, 948
BsmAI	GTCTC	2 cut(s)	151, 159
BsmBI	CGTCTC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	3 cut(s)	140, 281, 941
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	181, 235, 471, 944, 1112
BspACI	CCGC	5 cut(s)	300, 303, 306, 865, 935
BspANI	GGCC	3 cut(s)	140, 281, 941
BspCNI	CTCAG	2 cut(s)	247, 457
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	3 cut(s)	37, 43, 328
BspPI	GGATC	2 cut(s)	939, 1107
BspTI	CTTAAG	1 cut(s)	418
BsrFI	RCCGGY	2 cut(s)	89, 140
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	924, 1092
BssAI	RCCGGY	2 cut(s)	89, 140
BssECI	CCNNGG	4 cut(s)	130, 276, 282, 312
BssMI	GATC	5 cut(s)	181, 235, 471, 944, 1112
BssNI	GRCGYC	1 cut(s)	144
Bst2UI	CCWGG	4 cut(s)	131, 278, 283, 949
Bst6I	CTCTTC	3 cut(s)	650, 812, 1025
BstACI	GRCGYC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	418
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	142, 188, 273, 515
BstDEI	CTNAG	2 cut(s)	255, 465
BstF5I	GGATG	3 cut(s)	168, 484, 676
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	5 cut(s)	184, 238, 474, 947, 1115
BstMAI	GTCTC	2 cut(s)	151, 159
BstMBI	GATC	5 cut(s)	181, 235, 471, 944, 1112
BstMWI	GCNNNNNNNGC	6 cut(s)	123, 132, 141, 260, 305, 699
BstNI	CCWGG	4 cut(s)	131, 278, 283, 949
BstSCI	CCNGG	4 cut(s)	129, 276, 281, 947
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	376, 759, 1075
BstX2I	RGATCY	2 cut(s)	944, 1112
BstYI	RGATCY	2 cut(s)	944, 1112
BsuRI	GGCC	3 cut(s)	140, 281, 941
BtsCI	GGATG	3 cut(s)	168, 484, 676
BtsI	GCAGTG	3 cut(s)	330, 700, 757
BtsIMutI	CAGTG	6 cut(s)	330, 700, 757, 906, 931, 1099
Cac8I	GCNNGC	4 cut(s)	142, 188, 273, 515
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	2 cut(s)	89, 140
Cfr13I	GGNCC	2 cut(s)	36, 326
CseI	GACGC	3 cut(s)	133, 260, 719
Csp6I	GTAC	3 cut(s)	4, 738, 823
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	4 cut(s)	136, 179, 319, 989
CviQI	GTAC	3 cut(s)	4, 738, 823
DdeI	CTNAG	2 cut(s)	255, 465
DpnI	GATC	5 cut(s)	183, 237, 473, 946, 1114
DpnII	GATC	5 cut(s)	181, 235, 471, 944, 1112
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	650, 812, 1025
EarI	CTCTTC	3 cut(s)	650, 812, 1025
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	36, 326
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	4 cut(s)	465, 789, 864, 1032
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	202
EcoRII	CCWGG	4 cut(s)	129, 276, 281, 947
EcoT38I	GRGCYC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	4 cut(s)	139, 182, 322, 992
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FatI	CATG	4 cut(s)	135, 178, 318, 988
Fnu4HI	GCNGC	6 cut(s)	300, 303, 306, 390, 748, 1089
FokI	GGATG	3 cut(s)	155, 491, 683
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	6 cut(s)	300, 303, 306, 390, 748, 1089
FspBI	CTAG	3 cut(s)	393, 627, 1156
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	6 cut(s)	300, 303, 306, 390, 748, 1089
GsuI	CTGGAG	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	3 cut(s)	140, 281, 941
HapII	CCGG	3 cut(s)	39, 90, 141
HgaI	GACGC	3 cut(s)	133, 260, 719
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	139, 182, 322, 992
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	2 cut(s)	856, 1024
HindII	GTYRAC	2 cut(s)	856, 1024
HindIII	AAGCTT	1 cut(s)	206
HpaII	CCGG	3 cut(s)	39, 90, 141
HphI	GGTGA	2 cut(s)	223, 238
Hpy166II	GTNNAC	3 cut(s)	326, 856, 1024
Hpy188III	TCNNGA	5 cut(s)	39, 58, 111, 293, 1129
Hpy8I	GTNNAC	3 cut(s)	326, 856, 1024
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	654, 862, 946, 1030
HpyF10VI	GCNNNNNNNGC	6 cut(s)	123, 132, 141, 260, 305, 699
HpyF3I	CTNAG	2 cut(s)	255, 465
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	139, 182, 322, 992
HspAI	GCGC	1 cut(s)	190
Kpn2I	TCCGGA	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	181, 235, 471, 944, 1112
Lsp1109I	GCAGC	3 cut(s)	376, 759, 1075
LweI	GCATC	2 cut(s)	415, 922
MaeI	CTAG	3 cut(s)	393, 627, 1156
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	5 cut(s)	183, 237, 473, 946, 1114
MboI	GATC	5 cut(s)	181, 235, 471, 944, 1112
MflI	RGATCY	2 cut(s)	944, 1112
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	3 cut(s)	384, 957, 1133
MlyI	GAGTC	2 cut(s)	19, 283
MroI	TCCGGA	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	3 cut(s)	419, 618, 960
MslI	CAYNNNNRTG	1 cut(s)	669
MspCI	CTTAAG	1 cut(s)	418
MspI	CCGG	3 cut(s)	39, 90, 141
MspR9I	CCNGG	4 cut(s)	131, 278, 283, 949
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	4 cut(s)	131, 278, 283, 949
MwoI	GCNNNNNNNGC	6 cut(s)	123, 132, 141, 260, 305, 699
NaeI	GCCGGC	1 cut(s)	142
NdeII	GATC	5 cut(s)	181, 235, 471, 944, 1112
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	4 cut(s)	139, 182, 322, 992
NlaIV	GGNNCC	3 cut(s)	37, 43, 328
NmeAIII	GCCGAG	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	218
PctI	GAATGC	1 cut(s)	535
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	947
PkrI	GCNGC	6 cut(s)	301, 304, 307, 391, 749, 1090
PleI	GAGTC	2 cut(s)	19, 283
PpsI	GAGTC	2 cut(s)	19, 283
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	4 cut(s)	129, 276, 281, 947
PspGI	CCWGG	4 cut(s)	129, 276, 281, 947
PspN4I	GGNNCC	3 cut(s)	37, 43, 328
PspPI	GGNCC	2 cut(s)	36, 326
PspXI	VCTCGAGB	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	944, 1112
RsaI	GTAC	3 cut(s)	5, 739, 824
RsaNI	GTAC	3 cut(s)	4, 738, 823
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	419, 618, 960
SatI	GCNGC	6 cut(s)	300, 303, 306, 390, 748, 1089
Sau3AI	GATC	5 cut(s)	181, 235, 471, 944, 1112
Sau96I	GGNCC	2 cut(s)	36, 326
SchI	GAGTC	2 cut(s)	19, 283
ScrFI	CCNGG	4 cut(s)	131, 278, 283, 949
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	2 cut(s)	415, 922
SfcI	CTRYAG	1 cut(s)	450
Sfr274I	CTCGAG	1 cut(s)	218
SinI	GGWCC	2 cut(s)	36, 326
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	4 cut(s)	173, 203, 218, 418
SmoI	CTYRAG	4 cut(s)	173, 203, 218, 418
Sse9I	AATT	3 cut(s)	384, 957, 1133
SsiI	CCGC	5 cut(s)	300, 303, 306, 865, 935
SspMI	CTAG	3 cut(s)	393, 627, 1156
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	4 cut(s)	129, 276, 281, 947
TaqI	TCGA	6 cut(s)	120, 219, 294, 474, 782, 1104
TasI	AATT	3 cut(s)	384, 957, 1133
TatI	WGTACW	2 cut(s)	3, 737
TauI	GCSGC	3 cut(s)	302, 305, 308
Tru1I	TTAA	3 cut(s)	419, 618, 960
Tru9I	TTAA	3 cut(s)	419, 618, 960
TscAI	CASTG	6 cut(s)	337, 700, 757, 913, 931, 1099
TseI	GCWGC	3 cut(s)	389, 747, 1088
TspDTI	ATGAA	2 cut(s)	64, 1014
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	6 cut(s)	337, 700, 757, 913, 931, 1099
Van91I	CCANNNNNTGG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	36, 326
XapI	RAATTY	1 cut(s)	1133
XhoI	CTCGAG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	3 cut(s)	393, 627, 1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.