Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002497

Physical Location & Seq

Genomic Coordinates Reverse (-)

68271616 .. 68275685

Gene Structure 4070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG512600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGTTTCAGATACACAGACCCACCAAATTGCTGCTAGGAAGCAGAAGCAGATGGACAACTTAAGAGATGCTTTGAAACTAAAACCTGAAGCTACAGAAACAAATACTGAGGAGATCGAGGATGGACTAATCATTAGTACGAAGAATGATGGTAGCAGGCATTATGAGAGGAAAGAGCATTCGTTTTTGGACAGAGAATCTGGGTGGAAGAAATCTGTGGAGGATAAGCACAAGGTTGAGAAAGATAAGAAAAAGAGCGTTAAAGAATCTAGGAGGAACAAAAAGAAAGAAAGTAGGAAGAGAAGGCATAAGGATGATTCTTCTGATACAGATAGCAGTGGTAGCCCTCTGAAACCTGATAAAAAGAAAAAGCGTCGGAGTACAAGTAGCAGCAGTGAAGAAGATGATTCTGATGTTGATACATCGAAAAAGGAAGTTGAGAAATACAAAAAACGGCAGAAGAGGTACGATTCAGAAGAAGATGATTCTGAAGTTGATGTTGACAAGAAGTGGAAGGTTGTAAAGAAGCATAGTAAAAGCCGAAACAATAACACTGATGATTCTGATACCAGTGATGATGCGGAGGCCAGATCCAGGAAGGAAATTAAGAAATCCAAACAACCTCGTAGGAGGCATGATTCAGATGAAGATGATTCTGAAGATGATGTTGACAAGAAGAGGAAGGTTGTAGTGAAGCATAGTAAGACTAGAAACGATGATACTGATGATTCTGCTTCCAGTGAAGATGCCGAGGATAGATCCACAAAGGAAGTCAAGAAATCCAAACAACCTCGTAGGAGGCATGATTCAGATGAAGATGGTTCTGAAGATGATGTTGACAAGAAGAGGAAGGTTGTAAAGAAGCATAGTAAAAGCAGAAACGATGATATTGATGATTCTGCTGCCAGTGAAGATGCCGAGGATAGATCCACAAAGGAAGCCAAGAAATTCCAACAACCTCGTAGGAGGCATGATTCAGATGATGATTCTGGTTATCCTGAAGAACTGCCAAAGAGCAGAACTGAAAAGGGCAAACAACATGTGAAACCAAACAAAAGGCATGACCCTGGGGATGAGTCTGATTTTGACAGCAGAATGGAAAGGAAAAGTAGCCAAGTTGAGCAGCAAAGGAATCAGCAGGTCAGCCGCAGGGTAGATCGAGATGATTTTGATGTCGAGCAAGCCGACAATGGAAAAAGCAGAAACTTGTATGATAGTGATTCTGACTATGAAAGATCCAGAAAAAGTAGAGGTGCAATGACAGAAAAGAGTAGAAGAAGTGGCAGGAATGATACTAATGATGATGATACTAATATTGGGAGGAAACCCGGAAGGGTTGAAGAGGGTGATGGAGGACGTGGAAGGCACAACAAGGGTGAAATGCAAAGAGGAAGGAAGAATGAAAGAGATGAAGAGGATCATGATTATAGAAGGCCCAGGGAAGGTCTATTACAGGAGCTTGGAAATAGAAAGCGTGGTACTAGAGAGGAAGAAGGGGCAAATGAGGATATTGAGAGGGATAGACATATGGATTACAAGAGAGCAAAATACGATGAGTCTAGATCAAGTGAGAGGAGAAGGCATGAAACTGACAGACATAATGAAGAGGAGCATAAGTCTAGAAGGCATGGAGAAGATGAAGGGGAGCGTAGAAACAGAAGACATGGAAAATTGGAGGAACAACAGAGAAATAAGGAGATTGAGAGAGATAGACAGGATTCCAGATCAAGTGAGAGAAGAAGGTATGAGAATGTCAAGCACAATGACGGTCGGTCCAGGCATCGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

cwf21

Protein Analysis

596

Amino Acids

70.54

Weight (kDa)

8.93

Isoelectric Point (pI)

82.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49601
fragaria_vesca	FvH4_2g30620 FvH4_2g30620 FvH4_2g30620 FvH4_2g30620 FvH4_2g30620
malus_domestica	MD08G1133100.v1.1 MD15G1110900.v1.1 MD15G1111000.v1.1 MD15G1111100.v1.1
prunus_persica	Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0410401 RchiOBHm_Chr6g0312381
rosa_laevigata	RLG00000029779 RLG00000029782 RLG00000029786 RLG00000029787 RLG00000029792 RLG00000029797 RLG00000029803
rosa_multiflora	Rmu_co8494335.1_g000001 Rmu_ssc0000424.1_g000020 Rmu_ssc0000424.1_g000021
rosa_roxburghii	Rroxscaffold_5G00355210 Rroxscaffold_7G00156850
rosa_rugosa	Rorug01G0090000 Rorug04G0102300 Rorug06G0395200 Rorug06G0395300 Rorug06G0395400
rosa_samantha	Rh1AG107900 Rh4BG159600 Rh6AG512600 Rh6BG523500 Rh6CG528900 Rh6DG514800
rosa_wichuraiana	Rw6G044550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1129
AciI	CCGC	2 cut(s)	581, 1147
AclWI	GGATC	5 cut(s)	585, 753, 921, 1230, 1425
AcsI	RAATTY	1 cut(s)	947
AcuI	CTGAAG	5 cut(s)	108, 510, 678, 846, 1020
AfaI	GTAC	4 cut(s)	139, 382, 467, 1480
AfiI	CCNNNNNNNGG	2 cut(s)	594, 1442
AflII	CTTAAG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	1039
AgsI	TTSAA	2 cut(s)	76, 1340
AhdI	GACNNNNNGTC	1 cut(s)	1771
AjiI	CACGTC	1 cut(s)	1358
AjnI	CCWGG	4 cut(s)	593, 1066, 1436, 1775
AluBI	AGCT	2 cut(s)	92, 1459
AluI	AGCT	2 cut(s)	92, 1459
AlwI	GGATC	5 cut(s)	585, 753, 921, 1230, 1425
AoxI	GGCC	2 cut(s)	585, 1433
ApeKI	GCWGC	4 cut(s)	32, 390, 902, 1123
ApoI	RAATTY	1 cut(s)	947
AspS9I	GGNCC	2 cut(s)	1434, 1773
AsuC2I	CCSGG	1 cut(s)	1329
AsuHPI	GGTGA	2 cut(s)	1358, 1388
AvaII	GGWCC	1 cut(s)	1773
BarI	GAAGNNNNNNTAC	2 cut(s)	1434, 1466
BbsI	GAAGAC	1 cut(s)	1666
BbvI	GCAGC	4 cut(s)	19, 402, 889, 1135
BccI	CCATC	5 cut(s)	46, 116, 143, 812, 1343
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	4 cut(s)	595, 1068, 1438, 1777
BcnI	CCSGG	1 cut(s)	1329
BfaI	CTAG	6 cut(s)	36, 270, 708, 1482, 1560, 1620
BfmI	CTRYAG	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	1129
BisI	GCNGC	5 cut(s)	33, 391, 903, 1124, 1147
BlsI	GCNGC	5 cut(s)	34, 392, 904, 1125, 1148
Bme1390I	CCNGG	5 cut(s)	595, 1068, 1329, 1438, 1777
Bme18I	GGWCC	1 cut(s)	1773
BmeRI	GACNNNNNGTC	1 cut(s)	1771
BmgBI	CACGTC	1 cut(s)	1358
BmgT120I	GGNCC	2 cut(s)	1434, 1773
BmrFI	CCNGG	5 cut(s)	595, 1068, 1329, 1438, 1777
BmsI	GCATC	4 cut(s)	58, 568, 736, 904
BpiI	GAAGAC	1 cut(s)	1666
BpuMI	CCSGG	1 cut(s)	1329
BsaJI	CCNNGG	6 cut(s)	750, 918, 1066, 1067, 1436, 1437
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 1601, 1631
Bsc4I	CCNNNNNNNGG	2 cut(s)	594, 1442
Bse1I	ACTGG	3 cut(s)	570, 738, 906
Bse3DI	GCAATG	1 cut(s)	1263
BseBI	CCWGG	4 cut(s)	595, 1068, 1438, 1777
BseDI	CCNNGG	6 cut(s)	750, 918, 1066, 1067, 1436, 1437
BseGI	GGATG	3 cut(s)	127, 319, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	594, 1442
BseMI	GCAATG	1 cut(s)	1263
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	570, 738, 906
BseRI	GAGGAG	3 cut(s)	125, 1588, 1622
BseXI	GCAGC	4 cut(s)	19, 402, 889, 1135
Bsh1285I	CGRYCG	1 cut(s)	1771
BshFI	GGCC	2 cut(s)	587, 1435
BsiEI	CGRYCG	1 cut(s)	1771
BsiSI	CCGG	1 cut(s)	1329
BslI	CCNNNNNNNGG	2 cut(s)	594, 1442
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	587, 1435
Bsp143I	GATC	9 cut(s)	114, 590, 758, 926, 1156, 1235, 1417, 1562, 1724
BspACI	CCGC	2 cut(s)	581, 1147
BspANI	GGCC	2 cut(s)	587, 1435
BspCNI	CTCAG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	1420
BspMI	ACCTGC	1 cut(s)	1129
BspPI	GGATC	5 cut(s)	585, 753, 921, 1230, 1425
BspTI	CTTAAG	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	1263
BsrI	ACTGG	3 cut(s)	570, 738, 906
BssECI	CCNNGG	6 cut(s)	750, 918, 1066, 1067, 1436, 1437
BssMI	GATC	9 cut(s)	114, 590, 758, 926, 1156, 1235, 1417, 1562, 1724
Bst2UI	CCWGG	4 cut(s)	595, 1068, 1438, 1777
Bst4CI	ACNGT	1 cut(s)	1769
Bst6I	CTCTTC	7 cut(s)	293, 455, 671, 839, 1335, 1407, 1599
BstAFI	CTTAAG	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	158, 1182
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	127, 319, 1078
BstKTI	GATC	9 cut(s)	117, 593, 761, 929, 1159, 1238, 1420, 1565, 1727
BstMBI	GATC	9 cut(s)	114, 590, 758, 926, 1156, 1235, 1417, 1562, 1724
BstMCI	CGRYCG	1 cut(s)	1771
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	4 cut(s)	595, 1068, 1438, 1777
BstNSI	RCATGY	1 cut(s)	1043
BstSCI	CCNGG	5 cut(s)	593, 1066, 1327, 1436, 1775
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	19, 402, 889, 1135
BstV2I	GAAGAC	1 cut(s)	1666
BstX2I	RGATCY	4 cut(s)	590, 758, 926, 1235
BstYI	RGATCY	4 cut(s)	590, 758, 926, 1235
BsuRI	GGCC	2 cut(s)	587, 1435
BtrI	CACGTC	1 cut(s)	1358
BtsCI	GGATG	3 cut(s)	127, 319, 1078
BtsI	GCAGTG	2 cut(s)	343, 400
BtsIMutI	CAGTG	6 cut(s)	343, 400, 552, 577, 745, 913
BveI	ACCTGC	1 cut(s)	1129
Cac8I	GCNNGC	2 cut(s)	158, 1182
CciI	TCATGA	1 cut(s)	1420
Cfr13I	GGNCC	2 cut(s)	1434, 1773
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	4 cut(s)	138, 381, 466, 1479
CviAII	CATG	9 cut(s)	635, 803, 971, 1040, 1061, 1421, 1583, 1628, 1664
CviQI	GTAC	4 cut(s)	138, 381, 466, 1479
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	9 cut(s)	116, 592, 760, 928, 1158, 1237, 1419, 1564, 1726
DpnII	GATC	9 cut(s)	114, 590, 758, 926, 1156, 1235, 1417, 1562, 1724
DriI	GACNNNNNGTC	1 cut(s)	1771
Eam1104I	CTCTTC	7 cut(s)	293, 455, 671, 839, 1335, 1407, 1599
Eam1105I	GACNNNNNGTC	1 cut(s)	1771
EarI	CTCTTC	7 cut(s)	293, 455, 671, 839, 1335, 1407, 1599
Eco47I	GGWCC	1 cut(s)	1773
Eco57I	CTGAAG	5 cut(s)	108, 510, 678, 846, 1020
EcoRII	CCWGG	4 cut(s)	593, 1066, 1436, 1775
FaeI	CATG	9 cut(s)	638, 806, 974, 1043, 1064, 1424, 1586, 1631, 1667
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	9 cut(s)	634, 802, 970, 1039, 1060, 1420, 1582, 1627, 1663
FauNDI	CATATG	1 cut(s)	1527
Fnu4HI	GCNGC	5 cut(s)	33, 391, 903, 1124, 1147
FokI	GGATG	3 cut(s)	134, 326, 1085
Fsp4HI	GCNGC	5 cut(s)	33, 391, 903, 1124, 1147
FspBI	CTAG	6 cut(s)	36, 270, 708, 1482, 1560, 1620
GluI	GCNGC	5 cut(s)	33, 391, 903, 1124, 1147
HaeIII	GGCC	2 cut(s)	587, 1435
HapII	CCGG	1 cut(s)	1329
HgaI	GACGC	1 cut(s)	362
Hin1II	CATG	9 cut(s)	638, 806, 974, 1043, 1064, 1424, 1586, 1631, 1667
HincII	GTYRAC	3 cut(s)	502, 670, 838
HindII	GTYRAC	3 cut(s)	502, 670, 838
HpaII	CCGG	1 cut(s)	1329
HphI	GGTGA	2 cut(s)	1358, 1388
Hpy166II	GTNNAC	3 cut(s)	502, 670, 838
Hpy188III	TCNNGA	9 cut(s)	775, 998, 1160, 1239, 1421, 1560, 1620, 1722, 1784
Hpy8I	GTNNAC	3 cut(s)	502, 670, 838
Hpy99I	CGWCG	1 cut(s)	378
HpyCH4III	ACNGT	1 cut(s)	1769
HpyCH4IV	ACGT	1 cut(s)	1357
HpyCH4V	TGCA	2 cut(s)	1256, 1384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	1357
Hsp92II	CATG	9 cut(s)	638, 806, 974, 1043, 1064, 1424, 1586, 1631, 1667
Kzo9I	GATC	9 cut(s)	114, 590, 758, 926, 1156, 1235, 1417, 1562, 1724
LmnI	GCTCC	3 cut(s)	1456, 1609, 1645
Lsp1109I	GCAGC	4 cut(s)	19, 402, 889, 1135
LweI	GCATC	4 cut(s)	58, 568, 736, 904
MaeI	CTAG	6 cut(s)	36, 270, 708, 1482, 1560, 1620
MaeII	ACGT	1 cut(s)	1357
MaeIII	GTNAC	1 cut(s)	1784
MalI	GATC	9 cut(s)	116, 592, 760, 928, 1158, 1237, 1419, 1564, 1726
MboI	GATC	9 cut(s)	114, 590, 758, 926, 1156, 1235, 1417, 1562, 1724
MflI	RGATCY	4 cut(s)	590, 758, 926, 1235
MluCI	AATT	4 cut(s)	27, 603, 947, 1670
MlyI	GAGTC	2 cut(s)	1085, 1565
MmeI	TCCRAC	2 cut(s)	356, 976
MseI	TTAA	3 cut(s)	62, 261, 606
MslI	CAYNNNNRTG	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	61
MspI	CCGG	1 cut(s)	1329
MspR9I	CCNGG	5 cut(s)	595, 1068, 1329, 1438, 1777
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	4 cut(s)	595, 1068, 1438, 1777
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	1329
NdeI	CATATG	1 cut(s)	1527
NdeII	GATC	9 cut(s)	114, 590, 758, 926, 1156, 1235, 1417, 1562, 1724
NlaIII	CATG	9 cut(s)	638, 806, 974, 1043, 1064, 1424, 1586, 1631, 1667
NmeAIII	GCCGAG	2 cut(s)	775, 943
NmuCI	GTSAC	1 cut(s)	1784
NspI	RCATGY	1 cut(s)	1043
PagI	TCATGA	1 cut(s)	1420
PasI	CCCWGGG	2 cut(s)	1067, 1437
PciI	ACATGT	1 cut(s)	1039
PcsI	WCGNNNNNNNCGW	1 cut(s)	1182
PctI	GAATGC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	593
PkrI	GCNGC	5 cut(s)	34, 392, 904, 1125, 1148
PleI	GAGTC	2 cut(s)	1084, 1564
PpsI	GAGTC	2 cut(s)	1084, 1564
PscI	ACATGT	1 cut(s)	1039
Psp6I	CCWGG	4 cut(s)	593, 1066, 1436, 1775
PspGI	CCWGG	4 cut(s)	593, 1066, 1436, 1775
PspPI	GGNCC	2 cut(s)	1434, 1773
PsuI	RGATCY	4 cut(s)	590, 758, 926, 1235
RsaI	GTAC	4 cut(s)	139, 382, 467, 1480
RsaNI	GTAC	4 cut(s)	138, 381, 466, 1479
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	62, 261, 606
SatI	GCNGC	5 cut(s)	33, 391, 903, 1124, 1147
Sau3AI	GATC	9 cut(s)	114, 590, 758, 926, 1156, 1235, 1417, 1562, 1724
Sau96I	GGNCC	2 cut(s)	1434, 1773
SchI	GAGTC	2 cut(s)	1085, 1565
ScrFI	CCNGG	5 cut(s)	595, 1068, 1329, 1438, 1777
SfaNI	GCATC	4 cut(s)	58, 568, 736, 904
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	1773
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	4 cut(s)	27, 603, 947, 1670
SsiI	CCGC	2 cut(s)	581, 1147
SspI	AATATT	1 cut(s)	1315
SspMI	CTAG	6 cut(s)	36, 270, 708, 1482, 1560, 1620
StyD4I	CCNGG	5 cut(s)	593, 1066, 1327, 1436, 1775
TaaI	ACNGT	1 cut(s)	1769
TaiI	ACGT	1 cut(s)	1360
TaqI	TCGA	4 cut(s)	117, 425, 1159, 1176
TaqII	GACCGA	1 cut(s)	1761
TasI	AATT	4 cut(s)	27, 603, 947, 1670
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	1 cut(s)	1149
Tru1I	TTAA	3 cut(s)	62, 261, 606
Tru9I	TTAA	3 cut(s)	62, 261, 606
TscAI	CASTG	6 cut(s)	343, 400, 559, 577, 745, 913
TseFI	GTSAC	1 cut(s)	1784
TseI	GCWGC	4 cut(s)	32, 390, 902, 1123
Tsp45I	GTSAC	1 cut(s)	1784
TspDTI	ATGAA	8 cut(s)	660, 828, 1245, 1416, 1425, 1599, 1617, 1653
TspRI	CASTG	6 cut(s)	343, 400, 559, 577, 745, 913
Vha464I	CTTAAG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	1773
XapI	RAATTY	1 cut(s)	947
XbaI	TCTAGA	2 cut(s)	1559, 1619
XceI	RCATGY	1 cut(s)	1043
XspI	CTAG	6 cut(s)	36, 270, 708, 1482, 1560, 1620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.