Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002497

Physical Location & Seq

Genomic Coordinates Forward (+)

49478253 .. 49478980

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATGCGAAGGGCAGATCCAGAAAGGAAATTAAGAAATCCAAGCGACGTCATAGGAGGGCATGATTCAGATGAAGATGATTCTGAAGATGATGTTGACAAGAAGAGGAAGGTTGTAATGAAGCATGATAAGACTAGAAACAATGATACTGATGATTCTGCTGCCAATGAAGATGCCGAGGATAGATCCACAAAGGAAGTCAAGAATCCAAACAACCTCGTAGGAGCCATGAATCAAATAATGTCTCTGGTCAGCCATAGGGTAGATCGAGATGATTTTGATATGGAGAAGGCTGACAATGTTAGAAGTGGAAAAAGCATAAAATCATATGATAGTGATTCTATTTCTGACTATGAAAGATCCAGAAAAAGTAGAGGTGCAATAACAGAAAAAAGTAGAAGAAGTGGCAGGAATGATACTAATGATGATATTACTAATATTGGGAGGAAACCTGCAAGGGTTGAAGAGTGTGATGGAGGACGTGGAAGGCACAACAAGAATGAACTGCAAAGAGGAAGGAAAAATGAAAGAAATGAAGAGGATCATGATTATAGAAGGCCCAAGGAAGGTCTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

cwf21

Protein Analysis

193

Amino Acids

22.1

Weight (kDa)

5.85

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49601
fragaria_vesca	FvH4_2g30620 FvH4_2g30620 FvH4_2g30620 FvH4_2g30620 FvH4_2g30620
malus_domestica	MD08G1133100.v1.1 MD15G1110900.v1.1 MD15G1111000.v1.1 MD15G1111100.v1.1
prunus_persica	Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1 Prupe.1G463200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0410401 RchiOBHm_Chr6g0312381
rosa_laevigata	RLG00000029779 RLG00000029782 RLG00000029786 RLG00000029787 RLG00000029792 RLG00000029797 RLG00000029803
rosa_multiflora	Rmu_co8494335.1_g000001 Rmu_ssc0000424.1_g000020 Rmu_ssc0000424.1_g000021
rosa_roxburghii	Rroxscaffold_5G00355210 Rroxscaffold_7G00156850
rosa_rugosa	Rorug01G0090000 Rorug04G0102300 Rorug06G0395200 Rorug06G0395300 Rorug06G0395400
rosa_samantha	Rh1AG107900 Rh4BG159600 Rh6AG512600 Rh6BG523500 Rh6CG528900 Rh6DG514800
rosa_wichuraiana	Rw6G044550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	460
AclWI	GGATC	4 cut(s)	11, 180, 354, 549
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	1 cut(s)	464
AjiI	CACGTC	1 cut(s)	482
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	4 cut(s)	11, 180, 354, 549
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	177, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	177, 561
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	559
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	559
Bsp143I	GATC	5 cut(s)	16, 185, 265, 359, 541
BspANI	GGCC	1 cut(s)	559
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	4 cut(s)	11, 180, 354, 549
BssECI	CCNNGG	2 cut(s)	177, 561
BssMI	GATC	5 cut(s)	16, 185, 265, 359, 541
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	561
Bst6I	CTCTTC	3 cut(s)	98, 459, 531
BstACI	GRCGYC	1 cut(s)	48
BstKTI	GATC	5 cut(s)	19, 188, 268, 362, 544
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	5 cut(s)	16, 185, 265, 359, 541
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	3 cut(s)	16, 185, 359
BstYI	RGATCY	3 cut(s)	16, 185, 359
BsuRI	GGCC	1 cut(s)	559
BtrI	CACGTC	1 cut(s)	482
BveI	ACCTGC	1 cut(s)	460
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	558
CviAII	CATG	4 cut(s)	62, 125, 229, 545
CviJI	RGCY	4 cut(s)	227, 255, 293, 559
CviKI_1	RGCY	4 cut(s)	227, 255, 293, 559
DpnI	GATC	5 cut(s)	18, 187, 267, 361, 543
DpnII	GATC	5 cut(s)	16, 185, 265, 359, 541
Eam1104I	CTCTTC	3 cut(s)	98, 459, 531
EarI	CTCTTC	3 cut(s)	98, 459, 531
Eco130I	CCWWGG	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	4 cut(s)	65, 128, 232, 548
FatI	CATG	4 cut(s)	61, 124, 228, 544
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	65, 128, 232, 548
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	6 cut(s)	65, 80, 155, 205, 232, 338
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	70, 85, 349
Hpy188III	TCNNGA	6 cut(s)	20, 202, 269, 363, 545, 572
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	7 cut(s)	3, 103, 283, 480, 510, 549, 560
HpyCH4IV	ACGT	2 cut(s)	48, 481
HpyCH4V	TGCA	3 cut(s)	380, 455, 508
HpySE526I	ACGT	2 cut(s)	48, 481
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	65, 128, 232, 548
Kzo9I	GATC	5 cut(s)	16, 185, 265, 359, 541
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	33, 233, 376, 394, 465, 557
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	2 cut(s)	48, 481
MalI	GATC	5 cut(s)	18, 187, 267, 361, 543
MboI	GATC	5 cut(s)	16, 185, 265, 359, 541
MboII	GAAGA	7 cut(s)	86, 98, 115, 182, 411, 476, 548
MflI	RGATCY	3 cut(s)	16, 185, 359
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	9 cut(s)	50, 99, 172, 227, 368, 438, 470, 506, 532
MseI	TTAA	1 cut(s)	32
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	5 cut(s)	16, 185, 265, 359, 541
NlaIII	CATG	4 cut(s)	65, 128, 232, 548
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	202
PagI	TCATGA	1 cut(s)	544
PfeI	GAWTC	6 cut(s)	65, 80, 155, 205, 232, 338
PkrI	GCNGC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	558
PsuI	RGATCY	3 cut(s)	16, 185, 359
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	5 cut(s)	16, 185, 265, 359, 541
Sau96I	GGNCC	1 cut(s)	558
SetI	ASST	7 cut(s)	51, 114, 219, 379, 454, 484, 571
SfaNI	GCATC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	29
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	561
TaiI	ACGT	2 cut(s)	51, 484
TaqI	TCGA	1 cut(s)	268
TasI	AATT	1 cut(s)	29
TfiI	GAWTC	6 cut(s)	65, 80, 155, 205, 232, 338
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	8 cut(s)	87, 134, 183, 245, 369, 516, 540, 549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XspI	CTAG	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.