RLG00000034750

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005505
Physical Location & Seq
Forward (+)
53661103 .. 53672353
11251 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034750

Sequence Viewer

Length: 2304 bp
ATGTCGCAGGCAGATATCAGAAAGTGGTTTATGAAATCGCATGACAAGGCCAATGCCTCCAAATCGGCTCCGGCTCCGGCTGCTTCTGCTTTGCCGAAACAGTCTACAGACCCCCCTCAAGAACAGAATGTGCATGGAGGTGAAGAAAATTCAGGCAGAAGGAAAACCAGCAAGTATTTTCCTCCAAATAAACCAAAGCCGAATGAGGAAAAGGAAACAGTTGAAGTTCCAGCAAAGCGAAAGTCTCGACCTGATCCTGTTGAATCTAGCAGACCCTCACCTGCAAAAAAAGTTCAGAAAGTTGCTGATGATGATGACGACGACGACGATTTTGTTTTGCCTCAATCAAAAAAGAAAGAAGCCACGCCTAGCAAGAAACTGAAGAATGCATCTGGCATGGGAATTCCACAGAACCTGACGTCTGCGGATGAAAGTGATGATGATGAAGCCAAGGCTCCTCGCAAATCTGGTGGTAGAGGTCGTGGTGGAAGAGGTAGTTCATCGGCTGCACCAGCTGCTGGAAGAGGCAGAGGCGCTGGACGGGGCGGGTTTATGAATTTTGGCGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGACATTCCTGAAGGTGATCCAAACTGTCTAGCTGGTTTAACTTTCGTAATAAGTGGTACACTTGATAGTTTGGAAAGAGAGGAGGCAGAAAATTTGATCAAACGCCATGGTGGTCGTGTCACTGGTTCTGTCAGCAAGAAAACGAGCTATCTTTTATGTGATGAAGATATTGAGGGAAGGAAATCCTCAAAAGCCAAAGAACTTGGGACGCCTTTCCTTACTGAGGATGGCTTGTTTGATAAGATTCGGTCATCAATTCGTGCTAAAGCACCTGTGAAAGAAGAAAAGAAGCCTCTGGATGGTGCACAAGAAGCATCTTTGCCTAATAAAAGCCCTAAGAAAGTAGCATTAAAGAGTTCACCAGATTGCACTAGCAGCTCCTTGGCATGTAGGGTATCCCACAAACAGTCGCCATCTGATGCTTCCCTTGCTAGGCGCAAAGAGCAAACTACTGAGCGTCCTGCTTTGACATGGACGGAAAAATATAGACCAAACGTTCCAAATGACATTATTGGTAACCAGTCATTGGTAAAGCAGCTTCATGATTGGTTGGCACATTGGCATGAGCAATTCCGTGATACTGGAGTTAAGAAAAAAGGCAATAAACCAAACAATTCAGGTGCTAAAAAAGCTGTACTATTAAGTGGAACACCCGGAATTGGGAAAACAACTTCAGCAAAGTTGGTCAGTCAGATGCTCGGTTTCCAGGCAATTGAGGTAAATGCAAGTGACAGTCGTGGGAAAGCTGATTCCAAGATTGTCAAGGGAATCGGTGGAAGCAATGCAAACTCTGTTAAAGAGCTCGTCAGCAACGAGGCCCTAAGCATGGATAGATCTAAGCATCCCAAAACTGTGCTGATTATGGATGAGGTTGATGGAATGTCTGCTGGTGATCGGGGTGGAGTTGCTGATCTTATTGCTAGCATAAAGAGTTCTAAAATTCCCATTATCTGCATTTGTAATGATCGATACAGTCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTCAGCTTCCGCAAACCCACGAAACAACAGATGGCAAAGAGGTTGAAGCAAGTTGCAAATGCTGAAGGACTTCAAGTGAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTTAATGGAGACATGCGAATGGCACTTAACCAGTTGCAGTATATGAGTCTCTCAACGTCTGTCATAAAATATGAAGATGTAAGGCAACGCCTGCTAAGCAGTGCAAAGGATGAGGACATTTCACCATTCACAGCTGTTGACAAGCTGTTTGGTTTCAATGCTGGAAAGTTGCGGATGGATGAGCGGTTTGACCTGAGCATGAGTGATCCAGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAACTACAGGCCAAGTGCGGCTGTGAAGGATGATAGTGGGGTTGAACGTATGAACTTGATTGCCCGTGCCGCTGAGTCTATTGGAAATGGAGATATTATCAATGTACAAATTAGAAAATATCGCCAATGGCAACTTTCCCAAAGTGGTTCTCTGTCATCCAGCATAATTCCTGCTGCTTTGTTGCGTGGGCAAAGGGAGACACTTGAGCAGGGAGAAAGAAATTTTAATAGATTTGGAGGTTGGCTGGGAAAGAACTCAACATTAGGCAAAAATCTGAGGCTCTTAGAAGATTTGCATTTCCATCTTCTTGCATCTCGTGAATCTAGTTCAGGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000280 GO:0000712 GO:0000723 GO:0000731 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006278 GO:0006281 GO:0006283 GO:0006289 GO:0006296 GO:0006297 GO:0006301 GO:0006310 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008047 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010833 GO:0016043 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019985 GO:0022402 GO:0022414 GO:0030234 GO:0030554 GO:0031056 GO:0031060 GO:0031323 GO:0031326 GO:0031399 GO:0031935 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032268 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033043 GO:0033044 GO:0033260 GO:0033554 GO:0033683 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0035825 GO:0036094 GO:0042221 GO:0042276 GO:0042592 GO:0042769 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0045132 GO:0046483 GO:0048285 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051246 GO:0051252 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051570 GO:0051606 GO:0051716 GO:0060249 GO:0060255 GO:0060968 GO:0061982 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:0097367 GO:0098772 GO:0098813 GO:0140013 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1902275 GO:1903046 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
AAA BRCT RFC1

Protein Analysis

768

Amino Acids

83.82

Weight (kDa)

9.45

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 206 - 279 7.6e-18 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 221 - 272 4.7e-07 twin BRCT domain
AAA_22 PF13401 408 - 498 3.4e-06 AAA domain
AAA PF00004 411 - 524 2.3e-12 ATPase family associated with various cellular activities (AAA)
AAA_lid_RFC1 PF25361 545 - 601 4.1e-09 RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid PF21960 549 - 590 4.8e-07 RCF1/5-like, AAA+ ATPase lid domain
RFC1 PF08519 682 - 760 4.5e-16 Replication factor RFC1 C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
AatII GACGTC 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 289
AccB7I CCANNNNNTGG 2 cut(s) 518, 1123
AccBSI CCGCTC 1 cut(s) 1903
AccI GTMKAC 1 cut(s) 104
AciI CCGC 7 cut(s) 425, 546, 1618, 1891, 1903, 1982, 2034
AclI AACGTT 1 cut(s) 1092
AclWI GGATC 4 cut(s) 248, 569, 608, 1919
AcsI RAATTY 6 cut(s) 148, 402, 556, 688, 1536, 2185
AcuI CTGAAG 4 cut(s) 401, 627, 1254, 1692
AcyI GRCGYC 2 cut(s) 419, 806
AfaI GTAC 3 cut(s) 655, 1233, 2070
AfiI CCNNNNNNNGG 9 cut(s) 518, 587, 820, 896, 1029, 1123, 1256, 1257, 1423
AgsI TTSAA 6 cut(s) 224, 263, 1654, 1682, 1876, 2009
AjnI CCWGG 1 cut(s) 1302
Alw21I GWGCWC 2 cut(s) 904, 1401
Alw26I GTCTC 4 cut(s) 249, 1722, 1772, 2156
Alw44I GTGCAC 1 cut(s) 900
AlwI GGATC 4 cut(s) 248, 569, 608, 1919
AlwNI CAGNNNCTG 3 cut(s) 415, 518, 1579
AoxI GGCC 3 cut(s) 48, 1413, 1973
ApaLI GTGCAC 1 cut(s) 900
ApeKI GCWGC 6 cut(s) 80, 506, 515, 972, 1132, 2138
ApoI RAATTY 6 cut(s) 148, 402, 556, 688, 1536, 2185
ArsI GACNNNNNNTTYG 6 cut(s) 227, 259, 314, 346, 1850, 1882
Asp700I GAANNNNTTC 1 cut(s) 1677
AspLEI GCGC 2 cut(s) 536, 1035
AspS9I GGNCC 1 cut(s) 1414
AsuC2I CCSGG 1 cut(s) 1251
AsuHPI GGTGA 6 cut(s) 152, 270, 623, 948, 1499, 1833
AsuNHI GCTAGC 1 cut(s) 1517
BaeGI GKGCMC 1 cut(s) 904
BaeI ACNNNNGTAYC 2 cut(s) 1167, 1200
BanII GRGCYC 1 cut(s) 1401
BarI GAAGNNNNNNTAC 2 cut(s) 1119, 1151
BauI CACGAG 1 cut(s) 2280
Bbv12I GWGCWC 2 cut(s) 904, 1401
BbvI GCAGC 6 cut(s) 67, 493, 502, 984, 1144, 2125
BccI CCATC 7 cut(s) 818, 890, 1018, 1466, 1633, 1888, 2274
BciT130I CCWGG 1 cut(s) 1304
BciVI GTATCC 1 cut(s) 1003
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 1 cut(s) 1251
BcoDI GTCTC 4 cut(s) 249, 1722, 1772, 2156
BfaI CTAG 8 cut(s) 267, 369, 626, 969, 1029, 1518, 1934, 2289
BfmI CTRYAG 2 cut(s) 105, 1969
BfoI RGCGCY 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 289
BfuI GTATCC 1 cut(s) 1003
BglII AGATCT 2 cut(s) 1430, 1930
BisI GCNGC 8 cut(s) 81, 507, 516, 973, 1133, 1983, 2034, 2139
BlpI GCTNAGC 1 cut(s) 1814
BlsI GCNGC 8 cut(s) 82, 508, 517, 974, 1134, 1984, 2035, 2140
Bme1390I CCNGG 2 cut(s) 1251, 1304
BmgT120I GGNCC 1 cut(s) 1414
BmiI GGNNCC 3 cut(s) 69, 75, 456
BmrFI CCNGG 2 cut(s) 1251, 1304
BmsI GCATC 6 cut(s) 398, 920, 1006, 1281, 1447, 2285
BmtI GCTAGC 1 cut(s) 1521
BpmI CTGGAG 1 cut(s) 1200
Bpu10I CCTNAGC 2 cut(s) 1418, 1913
Bpu1102I GCTNAGC 1 cut(s) 1814
BpuEI CTTGAG 3 cut(s) 102, 1721, 2189
BpuMI CCSGG 1 cut(s) 1251
Bsa29I ATCGAT 1 cut(s) 1564
BsaBI GATNNNNATC 1 cut(s) 1929
BsaHI GRCGYC 2 cut(s) 419, 806
BsaJI CCNNGG 3 cut(s) 450, 703, 978
Bsc4I CCNNNNNNNGG 9 cut(s) 518, 587, 820, 896, 1029, 1123, 1256, 1257, 1423
Bse1I ACTGG 4 cut(s) 724, 1117, 1183, 1750
Bse3DI GCAATG 1 cut(s) 1384
Bse8I GATNNNNATC 1 cut(s) 1929
BseBI CCWGG 1 cut(s) 1304
BseCI ATCGAT 1 cut(s) 1564
BseDI CCNNGG 3 cut(s) 450, 703, 978
BseJI GATNNNNATC 1 cut(s) 1929
BseLI CCNNNNNNNGG 9 cut(s) 518, 587, 820, 896, 1029, 1123, 1256, 1257, 1423
BseMI GCAATG 1 cut(s) 1384
BseMII CTCAG 6 cut(s) 810, 1041, 1624, 1904, 2028, 2231
BseNI ACTGG 4 cut(s) 724, 1117, 1183, 1750
BseRI GAGGAG 2 cut(s) 447, 692
BseSI GKGCMC 1 cut(s) 904
BseXI GCAGC 6 cut(s) 67, 493, 502, 984, 1144, 2125
BseYI CCCAGC 1 cut(s) 2209
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 3 cut(s) 50, 1415, 1975
BshVI ATCGAT 1 cut(s) 1564
BsiHKAI GWGCWC 2 cut(s) 904, 1401
BsiSI CCGG 3 cut(s) 71, 77, 1251
BslFI GGGAC 2 cut(s) 817, 1922
BslI CCNNNNNNNGG 9 cut(s) 518, 587, 820, 896, 1029, 1123, 1256, 1257, 1423
BsmAI GTCTC 4 cut(s) 249, 1722, 1772, 2156
BsmFI GGGAC 2 cut(s) 817, 1922
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 3 cut(s) 50, 1415, 1975
Bsp1286I GDGCHC 2 cut(s) 904, 1401
Bsp1407I TGTACA 1 cut(s) 2068
Bsp1720I GCTNAGC 1 cut(s) 1814
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 7 cut(s) 425, 546, 1618, 1891, 1903, 1982, 2034
BspANI GGCC 3 cut(s) 50, 1415, 1975
BspCNI CTCAG 6 cut(s) 811, 1042, 1623, 1905, 2029, 2232
BspDI ATCGAT 1 cut(s) 1564
BspHI TCATGA 1 cut(s) 1138
BspLI GGNNCC 3 cut(s) 69, 75, 456
BspMI ACCTGC 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 1521
BspPI GGATC 4 cut(s) 248, 569, 608, 1919
BsrBI CCGCTC 1 cut(s) 1903
BsrDI GCAATG 1 cut(s) 1384
BsrGI TGTACA 1 cut(s) 2068
BsrI ACTGG 4 cut(s) 724, 1117, 1183, 1750
BssECI CCNNGG 3 cut(s) 450, 703, 978
BssNI GRCGYC 2 cut(s) 419, 806
BssSI CACGAG 1 cut(s) 2280
BssT1I CCWWGG 3 cut(s) 450, 703, 978
Bst2BI CACGAG 1 cut(s) 2280
Bst2UI CCWGG 1 cut(s) 1304
Bst4CI ACNGT 8 cut(s) 102, 220, 623, 1005, 1331, 1450, 1571, 1601
Bst6I CTCTTC 3 cut(s) 484, 517, 1947
BstACI GRCGYC 2 cut(s) 419, 806
BstAPI GCANNNNNTGC 2 cut(s) 515, 1810
BstAUI TGTACA 1 cut(s) 2068
BstC8I GCNNGC 3 cut(s) 9, 1519, 1811
BstDSI CCRYGG 1 cut(s) 703
BstEII GGTNACC 1 cut(s) 1112
BstENI CCTNNNNNAGG 1 cut(s) 818
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 2 cut(s) 536, 1035
BstMAI GTCTC 4 cut(s) 249, 1722, 1772, 2156
BstNI CCWGG 1 cut(s) 1304
BstNSI RCATGY 2 cut(s) 987, 1735
BstPI GGTNACC 1 cut(s) 1112
BstSCI CCNGG 2 cut(s) 1249, 1302
BstSFI CTRYAG 2 cut(s) 105, 1969
BstSLI GKGCMC 1 cut(s) 904
BstV1I GCAGC 6 cut(s) 67, 493, 502, 984, 1144, 2125
BstX2I RGATCY 3 cut(s) 574, 1430, 1930
BstYI RGATCY 3 cut(s) 574, 1430, 1930
Bsu15I ATCGAT 1 cut(s) 1564
BsuI GTATCC 1 cut(s) 1003
BsuRI GGCC 3 cut(s) 50, 1415, 1975
BsuTUI ATCGAT 1 cut(s) 1564
BtgI CCRYGG 1 cut(s) 703
BtsI GCAGTG 1 cut(s) 1825
BtsIMutI CAGTG 2 cut(s) 717, 1825
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 3 cut(s) 9, 1519, 1811
CaiI CAGNNNCTG 3 cut(s) 415, 518, 1579
CciI TCATGA 1 cut(s) 1138
CfoI GCGC 2 cut(s) 536, 1035
Cfr13I GGNCC 1 cut(s) 1414
ClaI ATCGAT 1 cut(s) 1564
CseI GACGC 2 cut(s) 814, 1043
Csp6I GTAC 3 cut(s) 654, 1232, 2069
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviQI GTAC 3 cut(s) 654, 1232, 2069
Eam1104I CTCTTC 3 cut(s) 484, 517, 1947
EarI CTCTTC 3 cut(s) 484, 517, 1947
Ecl136II GAGCTC 1 cut(s) 1399
Eco130I CCWWGG 3 cut(s) 450, 703, 978
Eco24I GRGCYC 1 cut(s) 1401
Eco32I GATATC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 1399
Eco57I CTGAAG 4 cut(s) 401, 627, 1254, 1692
Eco91I GGTNACC 1 cut(s) 1112
EcoICRI GAGCTC 1 cut(s) 1399
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 1414
EcoO65I GGTNACC 1 cut(s) 1112
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 1302
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 3 cut(s) 450, 703, 978
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 1401
ErhI CCWWGG 3 cut(s) 450, 703, 978
FaqI GGGAC 2 cut(s) 817, 1922
FauI CCCGC 1 cut(s) 539
FbaI TGATCA 1 cut(s) 693
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 8 cut(s) 81, 507, 516, 973, 1133, 1983, 2034, 2139
FriOI GRGCYC 1 cut(s) 1401
Fsp4HI GCNGC 8 cut(s) 81, 507, 516, 973, 1133, 1983, 2034, 2139
FspBI CTAG 8 cut(s) 267, 369, 626, 969, 1029, 1518, 1934, 2289
GlaI GCGC 2 cut(s) 535, 1034
GluI GCNGC 8 cut(s) 81, 507, 516, 973, 1133, 1983, 2034, 2139
GsaI CCCAGC 1 cut(s) 2213
GsuI CTGGAG 1 cut(s) 1200
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 3 cut(s) 50, 1415, 1975
HapII CCGG 3 cut(s) 71, 77, 1251
HgaI GACGC 2 cut(s) 814, 1043
HhaI GCGC 2 cut(s) 536, 1035
Hin1I GRCGYC 2 cut(s) 419, 806
Hin6I GCGC 2 cut(s) 534, 1033
HinP1I GCGC 2 cut(s) 534, 1033
HincII GTYRAC 1 cut(s) 1858
HindII GTYRAC 1 cut(s) 1858
HinfI GANTC 7 cut(s) 263, 841, 1346, 1365, 1765, 2039, 2285
HpaII CCGG 3 cut(s) 71, 77, 1251
HphI GGTGA 6 cut(s) 152, 270, 623, 948, 1499, 1833
Hpy166II GTNNAC 6 cut(s) 105, 656, 902, 956, 1594, 1858
Hpy188I TCNGA 6 cut(s) 20, 297, 1015, 1290, 1575, 2241
Hpy188III TCNNGA 9 cut(s) 119, 246, 605, 893, 1139, 1700, 1928, 1952, 2282
Hpy8I GTNNAC 6 cut(s) 105, 656, 902, 956, 1594, 1858
Hpy99I CGWCG 3 cut(s) 323, 326, 329
HpyAV CCTTC 5 cut(s) 153, 602, 768, 1667, 1984
HpyCH4III ACNGT 8 cut(s) 102, 220, 623, 1005, 1331, 1450, 1571, 1601
HpyCH4IV ACGT 4 cut(s) 419, 1092, 1775, 2011
HpySE526I ACGT 4 cut(s) 419, 1092, 1775, 2011
Hsp92I GRCGYC 2 cut(s) 419, 806
HspAI GCGC 2 cut(s) 534, 1033
Ksp22I TGATCA 1 cut(s) 693
LmnI GCTCC 4 cut(s) 73, 79, 460, 980
Lsp1109I GCAGC 6 cut(s) 67, 493, 502, 984, 1144, 2125
LweI GCATC 6 cut(s) 398, 920, 1006, 1281, 1447, 2285
MaeI CTAG 8 cut(s) 267, 369, 626, 969, 1029, 1518, 1934, 2289
MaeII ACGT 4 cut(s) 419, 1092, 1775, 2011
MaeIII GTNAC 3 cut(s) 715, 1112, 1325
MbiI CCGCTC 1 cut(s) 1903
MfeI CAATTG 1 cut(s) 1308
MflI RGATCY 3 cut(s) 574, 1430, 1930
MhlI GDGCHC 2 cut(s) 904, 1401
MlyI GAGTC 2 cut(s) 1774, 2048
Mph1103I ATGCAT 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 1677
MseI TTAA 9 cut(s) 635, 947, 1185, 1238, 1392, 1722, 1746, 1965, 2190
MslI CAYNNNNRTG 3 cut(s) 138, 1158, 1736
MspA1I CMGCKG 3 cut(s) 515, 1853, 2036
MspI CCGG 3 cut(s) 71, 77, 1251
MspR9I CCNGG 2 cut(s) 1251, 1304
MunI CAATTG 1 cut(s) 1308
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 1304
NciI CCSGG 1 cut(s) 1251
NcoI CCATGG 1 cut(s) 703
NheI GCTAGC 1 cut(s) 1517
NlaIV GGNNCC 3 cut(s) 69, 75, 456
NmuCI GTSAC 2 cut(s) 715, 1325
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 2 cut(s) 987, 1735
PagI TCATGA 1 cut(s) 1138
PaqCI CACCTGC 1 cut(s) 289
PcsI WCGNNNNNNNCGW 2 cut(s) 324, 1407
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 1677
PfeI GAWTC 5 cut(s) 263, 841, 1346, 1365, 2285
PflMI CCANNNNNTGG 2 cut(s) 518, 1123
PkrI GCNGC 8 cut(s) 82, 508, 517, 974, 1134, 1984, 2035, 2140
PleI GAGTC 2 cut(s) 1773, 2047
PpsI GAGTC 2 cut(s) 1773, 2047
Psp124BI GAGCTC 1 cut(s) 1401
Psp1406I AACGTT 1 cut(s) 1092
Psp6I CCWGG 1 cut(s) 1302
PspEI GGTNACC 1 cut(s) 1112
PspFI CCCAGC 1 cut(s) 2209
PspGI CCWGG 1 cut(s) 1302
PspN4I GGNNCC 3 cut(s) 69, 75, 456
PspPI GGNCC 1 cut(s) 1414
PstNI CAGNNNCTG 3 cut(s) 415, 518, 1579
PsuI RGATCY 3 cut(s) 574, 1430, 1930
PvuII CAGCTG 2 cut(s) 515, 1853
RsaI GTAC 3 cut(s) 655, 1233, 2070
RsaNI GTAC 3 cut(s) 654, 1232, 2069
RseI CAYNNNNRTG 3 cut(s) 138, 1158, 1736
SacI GAGCTC 1 cut(s) 1401
SaqAI TTAA 9 cut(s) 635, 947, 1185, 1238, 1392, 1722, 1746, 1965, 2190
SatI GCNGC 8 cut(s) 81, 507, 516, 973, 1133, 1983, 2034, 2139
Sau96I GGNCC 1 cut(s) 1414
SchI GAGTC 2 cut(s) 1774, 2048
ScrFI CCNGG 2 cut(s) 1251, 1304
SduI GDGCHC 2 cut(s) 904, 1401
SfaNI GCATC 6 cut(s) 398, 920, 1006, 1281, 1447, 2285
SfcI CTRYAG 2 cut(s) 105, 1969
SmiMI CAYNNNNRTG 3 cut(s) 138, 1158, 1736
SmlI CTYRAG 3 cut(s) 117, 1700, 2168
SmoI CTYRAG 3 cut(s) 117, 1700, 2168
SsiI CCGC 7 cut(s) 425, 546, 1618, 1891, 1903, 1982, 2034
SspMI CTAG 8 cut(s) 267, 369, 626, 969, 1029, 1518, 1934, 2289
SstI GAGCTC 1 cut(s) 1401
StyD4I CCNGG 2 cut(s) 1249, 1302
StyI CCWWGG 3 cut(s) 450, 703, 978
TaaI ACNGT 8 cut(s) 102, 220, 623, 1005, 1331, 1450, 1571, 1601
TaiI ACGT 4 cut(s) 422, 1095, 1778, 2014
TaqI TCGA 2 cut(s) 247, 1564
TaqII GACCGA 1 cut(s) 834
TatI WGTACW 2 cut(s) 1231, 2068
TauI GCSGC 2 cut(s) 1985, 2036
TfiI GAWTC 5 cut(s) 263, 841, 1346, 1365, 2285
Tru1I TTAA 9 cut(s) 635, 947, 1185, 1238, 1392, 1722, 1746, 1965, 2190
Tru9I TTAA 9 cut(s) 635, 947, 1185, 1238, 1392, 1722, 1746, 1965, 2190
TscAI CASTG 2 cut(s) 724, 1825
TseFI GTSAC 2 cut(s) 715, 1325
TseI GCWGC 6 cut(s) 80, 506, 515, 972, 1132, 2138
Tsp45I GTSAC 2 cut(s) 715, 1325
TspDTI ATGAA 9 cut(s) 47, 444, 459, 489, 569, 774, 1127, 1806, 2030
TspGWI ACGGA 2 cut(s) 1088, 1160
TspRI CASTG 2 cut(s) 724, 1825
Van91I CCANNNNNTGG 2 cut(s) 518, 1123
VneI GTGCAC 1 cut(s) 900
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 6 cut(s) 148, 402, 556, 688, 1536, 2185
XceI RCATGY 2 cut(s) 987, 1735
XmiI GTMKAC 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 1677
XspI CTAG 8 cut(s) 267, 369, 626, 969, 1029, 1518, 1934, 2289
ZraI GACGTC 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.