Rroxscaffold_1G00029410

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005505
Physical Location & Seq
Reverse (-)
37961523 .. 37974977
13455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029410.1

Sequence Viewer

Length: 2835 bp
ATGGCGGATATCAGAAAGTGGTTTATGAAATCGCATGACAAGGCCAATGCCTCCAAACCGGCTCCGGCTCCGGCTCCGCCTGCTTCTGCTTTGCCGAAACAGTCTACAGACCCTCAAGAACAGAATGTGCATGGAGGTGAAGAAAATTCAGGCAGAAGGAAAACCAGCAAGTATTTTCCTCCAAATAAACCAAAGCCGAATGAGGAAAAGGAAGCAGTTGAAGTTCCAGCAAAGCGAAAGACTCGACCTGATCCTGTTGAATCTAGCAGACCCTCACCTGCAAAAAAAGTTCAGAAAGTTGCTGATGATGTCGACGACGACGACGACGATTTTGTTTTGCCTCAATCAAAAAAGAAAGAAGCCACGCCTAGCAAGAAACTGAAGAATGCATCTGGCTTGGGAATTCCACAGAACCTGACGTCTGCAGATGAAAGTGATGATGATGAAGCCAAGGCTCCTCGCAAATCTGGTGGTAGGGGTCGCGGTGGAAGAGGTAGTTCATCGGCTGCACCAGCTGCTGGAAGAGGCAGAGGCGCTGGACGGGGTGGGTTTATGAATTTTGGCGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGACGTTCCTGAAGGTGATCCAAACTGTTTAGCTGGTTTAACTTTCGTAATAAGTGGTACACTTGATAGTTTGGAAAGAGAGGAGGCAGAAGATTTGATAAAACGCCATGGTGGTCGTATCACTGGATCTAGCTATCTTTTATGTGATGAAGATATTGAGGGCAGGAAATCCTCAAAAGCCAAAGAACTTGGGACGGCTTTCCTTACTGAGGATGGATTGTTTGATAAGATTCGGGCATCAATTGGTGCTAAAGCACCTGTGAAAGAAGAAAAGAAACCTGTGGATGGTGCACGAGAATCATCTTTGCCTAATAAAAGCCCTAAGAAAGTAGCATTAAAGAGTTCACCAGAATGCACTAGCAGCTCCTTGGCATGTAGGGTATCCCACAAACAGTCGCCATCAGATGCTTCCCTTGCTAGGCGCAAAGAGCAAACTACCGAGCATTCTGCTTTGACATGGACAGAAAAATATAGACCAAAGGTTCCAAATGACATTATTGGTAACCAGTCACTGGTAAAGCAGCTTCATGATTGGTTGGCACATTGGCATGAGCAATTCCGTGATACTGGAGTTAAGAAAAAAGGCAATAAACCAAACAATACAGTCGTGGGAAAGCTGATTCCAAGATTGTCAAGGGAATTGGTGGAAGCAATGCAAACTCTGTTAAAGAGCTCGTCAGCAACGAGGCCCCTAAGCATGGATAGATCTAAGCATCCCAAAACTGTGTTGATTATGGATGAGGTTGATGGGATGTCTGCTGGTGATCGGGGTGGAGTTGCTGATCTTATTGCCAGCATAAAGAGTTCTAAAATTCCCATTATCTGCATTTGTAATGATCGTTACAGTCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTCAGCTTCCGCAAACCCACTAAACAACAGAAGGTGTATAGTGGGACAGTGTTTATGGCAAAGAGGTTGAAGCAAGTTGCAAATGCTGAAGGACTTCAAGTGAATGAGATTGCTCTAGAGGAACTTGCAGAAAGAGTTAACGGAGACATGCGAATGGCACTTAACCAGTTGCACTATATGAGTCTCTCGATGTCTGTCATAAAATATGAAGATATAAGGCAACGCCTACTAAGCAGTGCAAAGGATGAGGATATTTCACCATTTACAGCTGTTGACAAGCTGTTTGGTTTCAATGCTGGAAGGTTGCGGATGGATGAGCGGTTTGACCTGAGCATGAGTGATCCAGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAACTACAGGCCAAGTGCGGCTGTGAAGGATAATAGTGGGGTTGAACGTATGAACTTGATCGCCCGTGCCGCTGAGTCTATTGGAAATGGGGATATTATCAATGTACAAATTAGAAAATATCGCCAATGGCAACTTTCCCAAAGTGGTTCTCTGTCATCCAGCATAATTCCAGCTGCTTTGTTGCGTGGGCCAAGGGAGACACTTGAGCAGGGAGAAAGAAATTTTAATAGATTTGGAGGTTGGCTAGGAAAGAACTCAACATTAGGCAAAAATCTGAGGCTCTTAGAAGATTTGCATTTCCATCTTCTTGCATCTCGTGAATCTAGTTCAGGGAGGGAGACCCTGCGAGTTGAATACCTTCCCCTACTTCTGAAACGATTGTCTGTGCCGCTGCGTAAATTGTCGAAGGATGAAGCTGTTCAGGAAGTTGTGGAGTTCATGAATACTTACTCCATTAGTCAAGATGATTATGATACTATTGTAGAGTTATCAAAATTTCAGGGGCATCCAAATCCGCTGGATGGTGTTCAGCCAGCTGTAAAAGCAGCTCTTACAAAAGCATACAAAGAAGGAAGCAAATCAAGGATGGTACGAGTTGCAGAGTTTGTCACTTTCCCTGGAATGAAAAAGGCTCCTAAGAAGAGGATCGCAGCTATTTTAGAACCATCTGACGATGTAATTGGAGAGAACAATGATACTTTGGTTCTAAGTGAAGAAGAAAATTCATCTGATACAGAGGACTTGGGATCCATCTTCAGGGACTTAGGATCTGAAAGCTCTGCTGTTGGGGAGAAGCTGCAACAGGAACTTCAAAGTTTGAATAAAAAAGGAGTGCAAGTTCAATTGGATTTGAAGGGTGCAACAAATCCAAGTGCCAAGAGGACACCAGCTGGAAGAGGTAAAGGTGGTTCTTCTGGTGCCTCTGAGAAAAAAGGTGGCCGAGGGTCAGGGTCTGGTGCCAAAAGAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000280 GO:0000712 GO:0000723 GO:0000731 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006278 GO:0006281 GO:0006283 GO:0006289 GO:0006296 GO:0006297 GO:0006301 GO:0006310 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008047 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010833 GO:0016043 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019985 GO:0022402 GO:0022414 GO:0030234 GO:0030554 GO:0031056 GO:0031060 GO:0031323 GO:0031326 GO:0031399 GO:0031935 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032268 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033043 GO:0033044 GO:0033260 GO:0033554 GO:0033683 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0035825 GO:0036094 GO:0042221 GO:0042276 GO:0042592 GO:0042769 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0045132 GO:0046483 GO:0048285 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051246 GO:0051252 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051570 GO:0051606 GO:0051716 GO:0060249 GO:0060255 GO:0060968 GO:0061982 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:0097367 GO:0098772 GO:0098813 GO:0140013 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1902275 GO:1903046 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
AAA BRCT RFC1

Protein Analysis

944

Amino Acids

103.47

Weight (kDa)

9.39

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 206 - 274 9.6e-11 BRCA1 C Terminus (BRCT) domain
AAA_lid_RFC1 PF25361 513 - 565 3.2e-07 RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid PF21960 514 - 555 6.8e-07 RCF1/5-like, AAA+ ATPase lid domain
RFC1 PF08519 647 - 809 7.3e-40 Replication factor RFC1 C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
AatII GACGTC 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 286
AccB1I GGYRCC 2 cut(s) 2777, 2816
AccB7I CCANNNNNTGG 2 cut(s) 518, 1108
AccBSI CCGCTC 1 cut(s) 1798
AccI GTMKAC 2 cut(s) 104, 312
AccII CGCG 1 cut(s) 483
AclWI GGATC 9 cut(s) 245, 569, 608, 730, 1814, 2513, 2601, 2614, 2635
AcoI YGGCCR 1 cut(s) 2797
AcsI RAATTY 7 cut(s) 145, 402, 556, 1407, 2080, 2354, 2581
AcuI CTGAAG 4 cut(s) 401, 627, 1587, 2599
AcyI GRCGYC 1 cut(s) 419
AfaI GTAC 3 cut(s) 655, 1965, 2451
AfiI CCNNNNNNNGG 9 cut(s) 518, 587, 805, 881, 1014, 1108, 1294, 2381, 2616
AjnI CCWGG 1 cut(s) 2476
AloI GAACNNNNNNTCC 2 cut(s) 2682, 2714
Alw21I GWGCWC 2 cut(s) 889, 1271
Alw26I GTCTC 4 cut(s) 1617, 1667, 2051, 2192
Alw44I GTGCAC 1 cut(s) 885
AlwI GGATC 9 cut(s) 245, 569, 608, 730, 1814, 2513, 2601, 2614, 2635
AlwNI CAGNNNCTG 5 cut(s) 415, 518, 1108, 1450, 2813
AoxI GGCC 5 cut(s) 42, 1283, 1868, 2048, 2797
ApaLI GTGCAC 1 cut(s) 885
ApeKI GCWGC 9 cut(s) 506, 515, 957, 1117, 2033, 2251, 2405, 2510, 2656
ApoI RAATTY 7 cut(s) 145, 402, 556, 1407, 2080, 2354, 2581
ArsI GACNNNNNNTTYG 4 cut(s) 314, 346, 1745, 1777
Asp700I GAANNNNTTC 3 cut(s) 1572, 2217, 2277
AspLEI GCGC 2 cut(s) 536, 1020
AspS9I GGNCC 2 cut(s) 1284, 2048
AsuHPI GGTGA 6 cut(s) 149, 267, 623, 933, 1370, 1728
BaeGI GKGCMC 1 cut(s) 889
BaeI ACNNNNGTAYC 6 cut(s) 1152, 1185, 2325, 2358, 2547, 2580
BamHI GGATCC 1 cut(s) 2606
BanI GGYRCC 2 cut(s) 2777, 2816
BanII GRGCYC 1 cut(s) 1271
BarI GAAGNNNNNNTAC 2 cut(s) 1104, 1136
BauI CACGAG 2 cut(s) 888, 2175
Bbv12I GWGCWC 2 cut(s) 889, 1271
BbvI GCAGC 9 cut(s) 493, 502, 969, 1129, 2020, 2238, 2417, 2522, 2643
BceAI ACGGC 1 cut(s) 807
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 1 cut(s) 2478
BciVI GTATCC 1 cut(s) 988
BcoDI GTCTC 4 cut(s) 1617, 1667, 2051, 2192
BfaI CTAG 9 cut(s) 264, 369, 726, 954, 1014, 1595, 1829, 2105, 2184
BfmI CTRYAG 3 cut(s) 105, 423, 1864
BfoI RGCGCY 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 286
BfuI GTATCC 1 cut(s) 988
BglII AGATCT 2 cut(s) 1301, 1825
Bme1390I CCNGG 1 cut(s) 2478
BmgT120I GGNCC 2 cut(s) 1284, 2048
BmrFI CCNGG 1 cut(s) 2478
BmsI GCATC 6 cut(s) 398, 842, 991, 1318, 2180, 2374
BpmI CTGGAG 1 cut(s) 1185
Bpu10I CCTNAGC 2 cut(s) 1289, 1808
BpuEI CTTGAG 2 cut(s) 99, 2084
BsaBI GATNNNNATC 1 cut(s) 1824
BsaHI GRCGYC 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 2192
BsaJI CCNNGG 6 cut(s) 450, 703, 963, 2051, 2476, 2800
BsaXI ACNNNNNCTCC 2 cut(s) 2682, 2712
Bsc4I CCNNNNNNNGG 9 cut(s) 518, 587, 805, 881, 1014, 1108, 1294, 2381, 2616
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 5 cut(s) 724, 1102, 1113, 1168, 1645
Bse3DI GCAATG 1 cut(s) 1254
Bse8I GATNNNNATC 1 cut(s) 1824
BseBI CCWGG 1 cut(s) 2478
BseDI CCNNGG 6 cut(s) 450, 703, 963, 2051, 2476, 2800
BseJI GATNNNNATC 1 cut(s) 1824
BseLI CCNNNNNNNGG 9 cut(s) 518, 587, 805, 881, 1014, 1108, 1294, 2381, 2616
BseMI GCAATG 1 cut(s) 1254
BseMII CTCAG 6 cut(s) 795, 1495, 1799, 1923, 2126, 2775
BseNI ACTGG 5 cut(s) 724, 1102, 1113, 1168, 1645
BseRI GAGGAG 2 cut(s) 447, 692
BseSI GKGCMC 1 cut(s) 889
BseXI GCAGC 9 cut(s) 493, 502, 969, 1129, 2020, 2238, 2417, 2522, 2643
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 5 cut(s) 44, 1285, 1870, 2050, 2799
BshNI GGYRCC 2 cut(s) 2777, 2816
BsiHKAI GWGCWC 2 cut(s) 889, 1271
BsiSI CCGG 3 cut(s) 59, 65, 71
BslFI GGGAC 4 cut(s) 802, 1537, 1817, 2633
BslI CCNNNNNNNGG 9 cut(s) 518, 587, 805, 881, 1014, 1108, 1294, 2381, 2616
BsmAI GTCTC 4 cut(s) 1617, 1667, 2051, 2192
BsmFI GGGAC 4 cut(s) 802, 1537, 1817, 2633
BsmI GAATGC 3 cut(s) 391, 953, 1039
BsnI GGCC 5 cut(s) 44, 1285, 1870, 2050, 2799
Bso31I GGTCTC 1 cut(s) 2192
Bsp1286I GDGCHC 2 cut(s) 889, 1271
Bsp1407I TGTACA 1 cut(s) 1963
Bsp19I CCATGG 1 cut(s) 703
BspANI GGCC 5 cut(s) 44, 1285, 1870, 2050, 2799
BspCNI CTCAG 6 cut(s) 796, 1494, 1800, 1924, 2127, 2776
BspFNI CGCG 1 cut(s) 483
BspHI TCATGA 2 cut(s) 1123, 2298
BspMAI CTGCAG 1 cut(s) 427
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 9 cut(s) 245, 569, 608, 730, 1814, 2513, 2601, 2614, 2635
BspT107I GGYRCC 2 cut(s) 2777, 2816
BspTNI GGTCTC 1 cut(s) 2192
BsrBI CCGCTC 1 cut(s) 1798
BsrDI GCAATG 1 cut(s) 1254
BsrFI RCCGGY 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 1963
BsrI ACTGG 5 cut(s) 724, 1102, 1113, 1168, 1645
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 6 cut(s) 450, 703, 963, 2051, 2476, 2800
BssNI GRCGYC 1 cut(s) 419
BssSI CACGAG 2 cut(s) 888, 2175
BssT1I CCWWGG 4 cut(s) 450, 703, 963, 2051
Bst2BI CACGAG 2 cut(s) 888, 2175
Bst2UI CCWGG 1 cut(s) 2478
Bst4CI ACNGT 8 cut(s) 102, 623, 990, 1201, 1321, 1442, 1472, 1528
Bst6I CTCTTC 5 cut(s) 484, 517, 1842, 2495, 2749
BstACI GRCGYC 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 515
BstAUI TGTACA 1 cut(s) 1963
BstC8I GCNNGC 3 cut(s) 81, 1390, 2394
BstDSI CCRYGG 1 cut(s) 703
BstEII GGTNACC 1 cut(s) 1097
BstENI CCTNNNNNAGG 1 cut(s) 803
BstFNI CGCG 1 cut(s) 483
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 2 cut(s) 536, 1020
BstMAI GTCTC 4 cut(s) 1617, 1667, 2051, 2192
BstMWI GCNNNNNNNGC 9 cut(s) 80, 512, 515, 957, 1010, 1024, 1710, 1928, 2402
BstNI CCWGG 1 cut(s) 2478
BstNSI RCATGY 2 cut(s) 972, 1630
BstPI GGTNACC 1 cut(s) 1097
BstSCI CCNGG 1 cut(s) 2476
BstSFI CTRYAG 3 cut(s) 105, 423, 1864
BstSLI GKGCMC 1 cut(s) 889
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 9 cut(s) 493, 502, 969, 1129, 2020, 2238, 2417, 2522, 2643
BstX2I RGATCY 6 cut(s) 574, 722, 1301, 1825, 2606, 2627
BstYI RGATCY 6 cut(s) 574, 722, 1301, 1825, 2606, 2627
BsuI GTATCC 1 cut(s) 988
BsuRI GGCC 5 cut(s) 44, 1285, 1870, 2050, 2799
BtgI CCRYGG 1 cut(s) 703
BtsI GCAGTG 1 cut(s) 1720
BtsIMutI CAGTG 4 cut(s) 717, 1106, 1533, 1720
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 3 cut(s) 81, 1390, 2394
CaiI CAGNNNCTG 5 cut(s) 415, 518, 1108, 1450, 2813
CciI TCATGA 2 cut(s) 1123, 2298
CfoI GCGC 2 cut(s) 536, 1020
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 1284, 2048
Csp6I GTAC 3 cut(s) 654, 1964, 2450
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviQI GTAC 3 cut(s) 654, 1964, 2450
EaeI YGGCCR 1 cut(s) 2797
Eam1104I CTCTTC 5 cut(s) 484, 517, 1842, 2495, 2749
EarI CTCTTC 5 cut(s) 484, 517, 1842, 2495, 2749
EciI GGCGGA 2 cut(s) 20, 66
Ecl136II GAGCTC 1 cut(s) 1269
Eco130I CCWWGG 4 cut(s) 450, 703, 963, 2051
Eco24I GRGCYC 1 cut(s) 1271
Eco31I GGTCTC 1 cut(s) 2192
Eco32I GATATC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 1269
Eco57I CTGAAG 4 cut(s) 401, 627, 1587, 2599
Eco91I GGTNACC 1 cut(s) 1097
EcoICRI GAGCTC 1 cut(s) 1269
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoO109I RGGNCCY 1 cut(s) 1284
EcoO65I GGTNACC 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 2476
EcoRV GATATC 1 cut(s) 10
EcoT14I CCWWGG 4 cut(s) 450, 703, 963, 2051
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 1271
ErhI CCWWGG 4 cut(s) 450, 703, 963, 2051
FalI AAGNNNNNCTT 2 cut(s) 2394, 2426
FaqI GGGAC 4 cut(s) 802, 1537, 1817, 2633
FblI GTMKAC 2 cut(s) 104, 312
FriOI GRGCYC 1 cut(s) 1271
FspBI CTAG 9 cut(s) 264, 369, 726, 954, 1014, 1595, 1829, 2105, 2184
GlaI GCGC 2 cut(s) 535, 1019
GsuI CTGGAG 1 cut(s) 1185
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 5 cut(s) 44, 1285, 1870, 2050, 2799
HapII CCGG 3 cut(s) 59, 65, 71
HhaI GCGC 2 cut(s) 536, 1020
Hin1I GRCGYC 1 cut(s) 419
Hin6I GCGC 2 cut(s) 534, 1018
HinP1I GCGC 2 cut(s) 534, 1018
HincII GTYRAC 3 cut(s) 313, 1618, 1753
HindII GTYRAC 3 cut(s) 313, 1618, 1753
HinfI GANTC 8 cut(s) 241, 260, 826, 893, 1216, 1660, 1934, 2180
HpaI GTTAAC 1 cut(s) 1618
HpaII CCGG 3 cut(s) 59, 65, 71
HphI GGTGA 6 cut(s) 149, 267, 623, 933, 1370, 1728
Hpy166II GTNNAC 8 cut(s) 105, 313, 656, 887, 941, 1465, 1618, 1753
Hpy8I GTNNAC 8 cut(s) 105, 313, 656, 887, 941, 1465, 1618, 1753
Hpy99I CGWCG 5 cut(s) 317, 320, 323, 326, 329
HpyCH4III ACNGT 8 cut(s) 102, 623, 990, 1201, 1321, 1442, 1472, 1528
HpyCH4IV ACGT 3 cut(s) 419, 600, 1906
HpyF10VI GCNNNNNNNGC 9 cut(s) 80, 512, 515, 957, 1010, 1024, 1710, 1928, 2402
HpySE526I ACGT 3 cut(s) 419, 600, 1906
Hsp92I GRCGYC 1 cut(s) 419
HspAI GCGC 2 cut(s) 534, 1018
KspAI GTTAAC 1 cut(s) 1618
LmnI GCTCC 6 cut(s) 67, 73, 79, 460, 965, 2497
Lsp1109I GCAGC 9 cut(s) 493, 502, 969, 1129, 2020, 2238, 2417, 2522, 2643
LweI GCATC 6 cut(s) 398, 842, 991, 1318, 2180, 2374
MaeI CTAG 9 cut(s) 264, 369, 726, 954, 1014, 1595, 1829, 2105, 2184
MaeII ACGT 3 cut(s) 419, 600, 1906
MaeIII GTNAC 4 cut(s) 1097, 1104, 1436, 2467
MbiI CCGCTC 1 cut(s) 1798
MfeI CAATTG 2 cut(s) 837, 2702
MflI RGATCY 6 cut(s) 574, 722, 1301, 1825, 2606, 2627
MhlI GDGCHC 2 cut(s) 889, 1271
MlyI GAGTC 3 cut(s) 235, 1669, 1943
Mph1103I ATGCAT 1 cut(s) 391
MroXI GAANNNNTTC 3 cut(s) 1572, 2217, 2277
MseI TTAA 8 cut(s) 635, 932, 1170, 1262, 1617, 1641, 1860, 2085
MslI CAYNNNNRTG 4 cut(s) 135, 946, 1143, 1631
MspA1I CMGCKG 8 cut(s) 515, 1748, 1931, 2033, 2251, 2377, 2396, 2750
MspI CCGG 3 cut(s) 59, 65, 71
MspR9I CCNGG 1 cut(s) 2478
MunI CAATTG 2 cut(s) 837, 2702
Mva1269I GAATGC 3 cut(s) 391, 953, 1039
MvaI CCWGG 1 cut(s) 2478
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 9 cut(s) 80, 512, 515, 957, 1010, 1024, 1710, 1928, 2402
NcoI CCATGG 1 cut(s) 703
NmeAIII GCCGAG 1 cut(s) 2825
NmuCI GTSAC 2 cut(s) 1104, 2467
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 2 cut(s) 972, 1630
PagI TCATGA 2 cut(s) 1123, 2298
PaqCI CACCTGC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 4 cut(s) 318, 321, 324, 1277
PctI GAATGC 3 cut(s) 391, 953, 1039
PdmI GAANNNNTTC 3 cut(s) 1572, 2217, 2277
PfeI GAWTC 5 cut(s) 260, 826, 893, 1216, 2180
PflMI CCANNNNNTGG 2 cut(s) 518, 1108
PleI GAGTC 3 cut(s) 235, 1668, 1942
PpsI GAGTC 3 cut(s) 235, 1668, 1942
Psp124BI GAGCTC 1 cut(s) 1271
Psp6I CCWGG 1 cut(s) 2476
PspEI GGTNACC 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 2476
PspPI GGNCC 2 cut(s) 1284, 2048
PsrI GAACNNNNNNTAC 2 cut(s) 2752, 2784
PstI CTGCAG 1 cut(s) 427
PstNI CAGNNNCTG 5 cut(s) 415, 518, 1108, 1450, 2813
PsuI RGATCY 6 cut(s) 574, 722, 1301, 1825, 2606, 2627
PvuII CAGCTG 5 cut(s) 515, 1748, 2033, 2396, 2750
RsaI GTAC 3 cut(s) 655, 1965, 2451
RsaNI GTAC 3 cut(s) 654, 1964, 2450
RseI CAYNNNNRTG 4 cut(s) 135, 946, 1143, 1631
SacI GAGCTC 1 cut(s) 1271
SalI GTCGAC 1 cut(s) 311
SaqAI TTAA 8 cut(s) 635, 932, 1170, 1262, 1617, 1641, 1860, 2085
Sau96I GGNCC 2 cut(s) 1284, 2048
SchI GAGTC 3 cut(s) 235, 1669, 1943
ScrFI CCNGG 1 cut(s) 2478
SduI GDGCHC 2 cut(s) 889, 1271
SfaNI GCATC 6 cut(s) 398, 842, 991, 1318, 2180, 2374
SfcI CTRYAG 3 cut(s) 105, 423, 1864
SmiMI CAYNNNNRTG 4 cut(s) 135, 946, 1143, 1631
SmlI CTYRAG 2 cut(s) 114, 2063
SmoI CTYRAG 2 cut(s) 114, 2063
SspMI CTAG 9 cut(s) 264, 369, 726, 954, 1014, 1595, 1829, 2105, 2184
SstI GAGCTC 1 cut(s) 1271
StyD4I CCNGG 1 cut(s) 2476
StyI CCWWGG 4 cut(s) 450, 703, 963, 2051
TaaI ACNGT 8 cut(s) 102, 623, 990, 1201, 1321, 1442, 1472, 1528
TaiI ACGT 3 cut(s) 422, 603, 1909
TaqI TCGA 4 cut(s) 244, 312, 1667, 2264
TatI WGTACW 1 cut(s) 1963
TauI GCSGC 3 cut(s) 1880, 1931, 2251
TfiI GAWTC 5 cut(s) 260, 826, 893, 1216, 2180
Tru1I TTAA 8 cut(s) 635, 932, 1170, 1262, 1617, 1641, 1860, 2085
Tru9I TTAA 8 cut(s) 635, 932, 1170, 1262, 1617, 1641, 1860, 2085
TscAI CASTG 4 cut(s) 724, 1113, 1533, 1720
TseFI GTSAC 2 cut(s) 1104, 2467
TseI GCWGC 9 cut(s) 506, 515, 957, 1117, 2033, 2251, 2405, 2510, 2656
Tsp45I GTSAC 2 cut(s) 1104, 2467
TspGWI ACGGA 2 cut(s) 1145, 1635
TspRI CASTG 4 cut(s) 724, 1113, 1533, 1720
Van91I CCANNNNNTGG 2 cut(s) 518, 1108
VneI GTGCAC 1 cut(s) 885
XagI CCTNNNNNAGG 1 cut(s) 803
XapI RAATTY 7 cut(s) 145, 402, 556, 1407, 2080, 2354, 2581
XbaI TCTAGA 1 cut(s) 1594
XceI RCATGY 2 cut(s) 972, 1630
XmiI GTMKAC 2 cut(s) 104, 312
XmnI GAANNNNTTC 3 cut(s) 1572, 2217, 2277
XspI CTAG 9 cut(s) 264, 369, 726, 954, 1014, 1595, 1829, 2105, 2184
ZraI GACGTC 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.