Rh5AG338000

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005505
Physical Location & Seq
Forward (+)
54631269 .. 54647120
15852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG338000.1

Sequence Viewer

Length: 2910 bp
ATGTCGCAGGCAGATATCAGAAAGTGGTTTATGAAATCGCATGACAAGGCCAATGCCTCCAAACCGGCTCCGGCTCCGGCTGCTTCTGCTTTGCCGAAACAGTCTACAGACCCTCAACAACAGAATGTGCATGGAGGTGAAGAAAATTCAGGCAGAAGGAAAACCAGCAAGTATTTTCCTCCAAATAAACCAAAGCCGAATGAGGAAAAGGAAACCGTTGAAGTTCCTGCAAAGCGAAAGACTCGACCTGATCCTGTTGAATCTAGCAGACCCTCACCTGCAAAAAAAGTTCAGAAAGTTGCTGACGACGACGACGACGACGATTTTGTTTTGCCTCAATCAAAAAAGAAAGAAGCCACGCCTAGCAAGAAACTGAAGAATGCATCTGGCATGGGAATTCCACAGAACCTGACGTCTGCAGATGAAAGTGATGATGATGAAGCCAAGGCTCCTCGCAAATCTGGTGGTAGAGGTCGTGGTGGAAGAGGTAGTTCATCGGCTGCACCAGCTGCTGGAAGAGGCAGAGGCGCTGGACGGGGTGGGTTTATGAATTTTGGCGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGACGTTCCTGAAGGTGATCCAAACTGTCTAGCTGGTTTAACTTTCGTAATAAGTGGTACACTTGATAGTTTGGAAAGAGAGGAGGCAGAAGATTTGATAAAACGTCATGGTGGTCGTATCACTGGATCTGTCAGCAAGAAAACGAGCTATCTTTTATGTGATGAAGATATTGAGGGCAGGAAATCCTCAAAAGCCAAAGAACTTGGGACGGCTTTCCTTACTGAGGATGGATTGTTTGATAAGATCCGGGCATCAATTCGTGCTAAAGCACCTGTGAAAGAAGAAAAGAAACCTGTGGATAGTGCACGAGAATCATCTTTGCCTAATAAAAGCCCTAAGAAAGTAGCATTAAAGAGTTCACCAGATTGCACTAGCAGATCCTTGGCATGTAGGGTATCCCACAAACAGTCGCCATCAGATGCTTCCCTTGCTAGGCGCAAAGAGCAAACTACCGAGCATTCTGCTTTGACATGGACAGAAAAATATAGACCAAAGGTTCCAAATGACATTATTGGTAACCAGTCACTGGTAAAGCAGCTTCATGATTGGTTGGCACATTGGCATGAGCAATTCCGTGATACTGGAGTTAAGAAAAAAGGCAATAAACCAAACAATACAGGTGCTAAAAAAGCTGTACTATTAAGTGGAACACCCGGAATAGGGAAAACAACGTCAGCAAAGTTGGTCAGTCAGATGCTCGGTTTCCAGGCAATTGAGGTAAATGCAAGTGACAGTCGTGGGAAAGCTGATTCCAAGATTGTCAAGGGAATCGGTGGAAGCAATGCAAACTCTGTTAAAGAGCTCGTCAGCAACGAGGCCCTAAGCATGGATAGATCTAAGCATCCCAAAACTGTGCTGATTATGGATGAGGTTGATGGGATGTCTGCTGGTGATCGGGGTGGAGTTGCTGATCTTATTGCTAGCATAAAGAGTTCTAAAATTCCCATTATCTGCATTTGTAATGATCGTTACAGTCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTCAGCTTCCGCAAACCCACTAAACAACAGATGGCAAAGAGGTTGAAGCAAGTTGCAAATGCTGAAGGACTTCAAGTGAATGAGATTGCTCTTGAGGAACTTGCAGAGAGAGTTAACGGAGACATGCGAATGGCACTTAATCAGTTGCACTATATGAGTCTCTCGATGTCTGTCATAAAATATGAAGATATAAGGCAACGCCTACTAAGCAGTGCAAAGGATGAGGATATTTCACCATTCACAGCTGTTGACAAGCTGTTTGGTTTCAATGCTGGAAAGTTGCGGATGGATGAGCGGTTTGACCTGAGCATGAGTGATCCAGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAACTACAGGCCAAGTGCGGCTGTTAAGGATGATAGTGGGGTTGAACGTATGAACTTGATCGCCCGTGCCGCTGAGTCTATTGGAAATGGGGATATTATCAATGTACAAATTAGAAAATATCGCCAATGGCAACTTTCCCAAAGTTGTTCTCTGTCATCCAGCATAATTCCAGCTGCTTTGTTGCGTGGGCAAAGGGAGACACTTGAGCAGGGAGAAAGAAATTTTAATAGATTTGGAGGTTGGCTAGGAAAGAACTCAACATTAGGCAAAAATCTGAGGCTCTTAGAAGATTTGCATTTCCATCTTCTTGCATCTCGTGAATCTAGTTCAGGGAGGGAGACCCTGCGAGTTGAATACCTTCCCCTACTTTTGAAACGATTGTCTGTGCCGCTGCGTAAATTGTCGAAGGATGAAGCTGTTCAGGAAGTTGTGGAGTTCATGAATACTTACTCCATTAGTCAAGATGACTATGATACTATTGTAGAGTTATCAAAATTTCAGGGGCATCCAAATCTGCTGGATGGTGTTCAGCCAGCTGTAAAATCAGCTCTTACAAAAGCATACAAAGAAGGAAGCAAATCAAGGATGGTACGAGTTGCAGAGTTTGTCACTTTCCCTGGAATGAAAAAGGCTCCTAAGAAGAGGATCGCAGCTATTTTAGAACCATCTGACGATGTAACTGGGGAGAACAATAATGATACTTTGGTTCTAAGTGAAGAAGAAAATTCATCTGATACTGAGGACTTGGAAAGCTCTGCTGTTGGGGAGAAGCTGCAACAGGAACTTCAAAGTTTGAATAAAAAAGGAGTGCAAGTTCAATTGGATTTGAAGGGTACAACAAATCCAAGTGCCAAGAGGACACCAGCTGGAAGAGGTAAAGGTGCTTCTTCTGGTGCCTCTGAGAAAAAAGGTGGCCGAGGTTCAGGGTCTGGTGCCAAAAGAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000280 GO:0000712 GO:0000723 GO:0000731 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006278 GO:0006281 GO:0006283 GO:0006289 GO:0006296 GO:0006297 GO:0006301 GO:0006310 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008047 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010833 GO:0016043 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019985 GO:0022402 GO:0022414 GO:0030234 GO:0030554 GO:0031056 GO:0031060 GO:0031323 GO:0031326 GO:0031399 GO:0031935 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032268 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033043 GO:0033044 GO:0033260 GO:0033554 GO:0033683 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0035825 GO:0036094 GO:0042221 GO:0042276 GO:0042592 GO:0042769 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0045132 GO:0046483 GO:0048285 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051246 GO:0051252 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051570 GO:0051606 GO:0051716 GO:0060249 GO:0060255 GO:0060968 GO:0061982 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:0097367 GO:0098772 GO:0098813 GO:0140013 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1902275 GO:1903046 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
AAA BRCT RFC1

Protein Analysis

969

Amino Acids

105.98

Weight (kDa)

9.46

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 204 - 277 5.4e-17 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 219 - 267 4.7e-06 twin BRCT domain
AAA_22 PF13401 406 - 496 4.8e-06 AAA domain
AAA PF00004 409 - 522 3.3e-12 ATPase family associated with various cellular activities (AAA)
AAA_lid_RFC1 PF25361 543 - 598 4.3e-08 RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid PF21960 547 - 588 7e-07 RCF1/5-like, AAA+ ATPase lid domain
RFC1 PF08519 680 - 842 1.1e-40 Replication factor RFC1 C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
AatII GACGTC 1 cut(s) 416
Acc36I ACCTGC 1 cut(s) 286
AccB1I GGYRCC 2 cut(s) 2852, 2891
AccB7I CCANNNNNTGG 2 cut(s) 512, 1117
AccBSI CCGCTC 1 cut(s) 1897
AccI GTMKAC 1 cut(s) 104
AciI CCGC 6 cut(s) 1612, 1885, 1897, 1976, 2028, 2348
AclWI GGATC 8 cut(s) 245, 563, 602, 724, 829, 963, 1913, 2612
AcoI YGGCCR 1 cut(s) 2872
AcsI RAATTY 7 cut(s) 145, 396, 550, 1530, 2179, 2453, 2683
AcuI CTGAAG 3 cut(s) 395, 621, 1686
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 5 cut(s) 649, 1227, 2064, 2550, 2794
AfiI CCNNNNNNNGG 8 cut(s) 512, 581, 814, 1023, 1117, 1250, 1251, 1417
AjnI CCWGG 2 cut(s) 1296, 2575
AloI GAACNNNNNNTCC 2 cut(s) 2757, 2789
Alw21I GWGCWC 2 cut(s) 898, 1395
Alw26I GTCTC 4 cut(s) 1716, 1766, 2150, 2291
Alw44I GTGCAC 1 cut(s) 894
AlwI GGATC 8 cut(s) 245, 563, 602, 724, 829, 963, 1913, 2612
AlwNI CAGNNNCTG 5 cut(s) 409, 512, 1117, 1573, 2888
AoxI GGCC 4 cut(s) 48, 1407, 1967, 2872
ApaLI GTGCAC 1 cut(s) 894
ApeKI GCWGC 8 cut(s) 80, 500, 509, 1126, 2132, 2350, 2609, 2731
ApoI RAATTY 7 cut(s) 145, 396, 550, 1530, 2179, 2453, 2683
ArsI GACNNNNNNTTYG 4 cut(s) 308, 340, 1844, 1876
Asp700I GAANNNNTTC 3 cut(s) 1671, 2316, 2376
AspLEI GCGC 2 cut(s) 530, 1029
AspS9I GGNCC 1 cut(s) 1408
AsuC2I CCSGG 2 cut(s) 839, 1245
AsuHPI GGTGA 6 cut(s) 149, 267, 617, 942, 1493, 1827
AsuNHI GCTAGC 1 cut(s) 1511
BaeGI GKGCMC 1 cut(s) 898
BaeI ACNNNNGTAYC 6 cut(s) 1161, 1194, 2424, 2457, 2649, 2682
BanI GGYRCC 2 cut(s) 2852, 2891
BanII GRGCYC 1 cut(s) 1395
BarI GAAGNNNNNNTAC 4 cut(s) 1113, 1145, 2827, 2859
BauI CACGAG 2 cut(s) 897, 2274
Bbv12I GWGCWC 2 cut(s) 898, 1395
BbvI GCAGC 8 cut(s) 67, 487, 496, 1138, 2119, 2337, 2621, 2718
BccI CCATC 9 cut(s) 812, 1012, 1460, 1627, 1882, 2268, 2474, 2539, 2632
BceAI ACGGC 1 cut(s) 816
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BciT130I CCWGG 2 cut(s) 1298, 2577
BciVI GTATCC 1 cut(s) 997
BcnI CCSGG 2 cut(s) 839, 1245
BcoDI GTCTC 4 cut(s) 1716, 1766, 2150, 2291
BfaI CTAG 9 cut(s) 264, 363, 620, 963, 1023, 1512, 1928, 2204, 2283
BfmI CTRYAG 3 cut(s) 105, 417, 1963
BfoI RGCGCY 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 286
BfuI GTATCC 1 cut(s) 997
BglII AGATCT 2 cut(s) 1424, 1924
Bme1390I CCNGG 4 cut(s) 839, 1245, 1298, 2577
BmgT120I GGNCC 1 cut(s) 1408
BmiI GGNNCC 7 cut(s) 69, 75, 450, 1089, 2592, 2854, 2893
BmrFI CCNGG 4 cut(s) 839, 1245, 1298, 2577
BmrI ACTGGG 1 cut(s) 2649
BmsI GCATC 7 cut(s) 392, 851, 1000, 1275, 1441, 2279, 2473
BmtI GCTAGC 1 cut(s) 1515
BmuI ACTGGG 1 cut(s) 2649
BpmI CTGGAG 1 cut(s) 1194
Bpu10I CCTNAGC 2 cut(s) 1412, 1907
BpuEI CTTGAG 2 cut(s) 1715, 2183
BpuMI CCSGG 2 cut(s) 839, 1245
BsaBI GATNNNNATC 1 cut(s) 1923
BsaHI GRCGYC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 2291
BsaJI CCNNGG 4 cut(s) 444, 972, 2575, 2875
BsaXI ACNNNNNCTCC 2 cut(s) 2757, 2787
Bsc4I CCNNNNNNNGG 8 cut(s) 512, 581, 814, 1023, 1117, 1250, 1251, 1417
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 5 cut(s) 718, 1111, 1122, 1177, 2644
Bse3DI GCAATG 1 cut(s) 1378
Bse8I GATNNNNATC 1 cut(s) 1923
BseBI CCWGG 2 cut(s) 1298, 2577
BseDI CCNNGG 4 cut(s) 444, 972, 2575, 2875
BseJI GATNNNNATC 1 cut(s) 1923
BseLI CCNNNNNNNGG 8 cut(s) 512, 581, 814, 1023, 1117, 1250, 1251, 1417
BseMI GCAATG 1 cut(s) 1378
BseMII CTCAG 7 cut(s) 804, 1618, 1898, 2022, 2225, 2688, 2850
BseNI ACTGG 5 cut(s) 718, 1111, 1122, 1177, 2644
BseRI GAGGAG 2 cut(s) 441, 686
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 8 cut(s) 67, 487, 496, 1138, 2119, 2337, 2621, 2718
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 4 cut(s) 50, 1409, 1969, 2874
BshNI GGYRCC 2 cut(s) 2852, 2891
BsiHKAI GWGCWC 2 cut(s) 898, 1395
BsiSI CCGG 5 cut(s) 65, 71, 77, 838, 1245
BslFI GGGAC 2 cut(s) 811, 1916
BslI CCNNNNNNNGG 8 cut(s) 512, 581, 814, 1023, 1117, 1250, 1251, 1417
BsmAI GTCTC 4 cut(s) 1716, 1766, 2150, 2291
BsmFI GGGAC 2 cut(s) 811, 1916
BsmI GAATGC 2 cut(s) 385, 1048
BsnI GGCC 4 cut(s) 50, 1409, 1969, 2874
Bso31I GGTCTC 1 cut(s) 2291
Bsp1286I GDGCHC 2 cut(s) 898, 1395
Bsp1407I TGTACA 1 cut(s) 2062
BspACI CCGC 6 cut(s) 1612, 1885, 1897, 1976, 2028, 2348
BspANI GGCC 4 cut(s) 50, 1409, 1969, 2874
BspCNI CTCAG 7 cut(s) 805, 1617, 1899, 2023, 2226, 2689, 2851
BspHI TCATGA 2 cut(s) 1132, 2397
BspLI GGNNCC 7 cut(s) 69, 75, 450, 1089, 2592, 2854, 2893
BspMAI CTGCAG 1 cut(s) 421
BspMI ACCTGC 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 1515
BspPI GGATC 8 cut(s) 245, 563, 602, 724, 829, 963, 1913, 2612
BspT107I GGYRCC 2 cut(s) 2852, 2891
BspTNI GGTCTC 1 cut(s) 2291
BsrBI CCGCTC 1 cut(s) 1897
BsrDI GCAATG 1 cut(s) 1378
BsrFI RCCGGY 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 2062
BsrI ACTGG 5 cut(s) 718, 1111, 1122, 1177, 2644
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 4 cut(s) 444, 972, 2575, 2875
BssNI GRCGYC 1 cut(s) 413
BssSI CACGAG 2 cut(s) 897, 2274
BssT1I CCWWGG 2 cut(s) 444, 972
Bst2BI CACGAG 2 cut(s) 897, 2274
Bst2UI CCWGG 2 cut(s) 1298, 2577
Bst4CI ACNGT 8 cut(s) 102, 217, 617, 999, 1325, 1444, 1565, 1595
Bst6I CTCTTC 5 cut(s) 478, 511, 1941, 2594, 2824
BstACI GRCGYC 1 cut(s) 413
BstAPI GCANNNNNTGC 1 cut(s) 509
BstAUI TGTACA 1 cut(s) 2062
BstC8I GCNNGC 3 cut(s) 9, 1513, 2493
BstEII GGTNACC 1 cut(s) 1106
BstENI CCTNNNNNAGG 1 cut(s) 812
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 2 cut(s) 530, 1029
BstMAI GTCTC 4 cut(s) 1716, 1766, 2150, 2291
BstMWI GCNNNNNNNGC 9 cut(s) 80, 86, 506, 509, 1019, 1033, 1220, 1809, 2027
BstNI CCWGG 2 cut(s) 1298, 2577
BstNSI RCATGY 2 cut(s) 981, 1729
BstPI GGTNACC 1 cut(s) 1106
BstSCI CCNGG 4 cut(s) 837, 1243, 1296, 2575
BstSFI CTRYAG 3 cut(s) 105, 417, 1963
BstSLI GKGCMC 1 cut(s) 898
BstV1I GCAGC 8 cut(s) 67, 487, 496, 1138, 2119, 2337, 2621, 2718
BstX2I RGATCY 6 cut(s) 568, 716, 834, 968, 1424, 1924
BstYI RGATCY 6 cut(s) 568, 716, 834, 968, 1424, 1924
BsuI GTATCC 1 cut(s) 997
BsuRI GGCC 4 cut(s) 50, 1409, 1969, 2874
BtsI GCAGTG 1 cut(s) 1819
BtsIMutI CAGTG 3 cut(s) 711, 1115, 1819
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 3 cut(s) 9, 1513, 2493
CaiI CAGNNNCTG 5 cut(s) 409, 512, 1117, 1573, 2888
CciI TCATGA 2 cut(s) 1132, 2397
CfoI GCGC 2 cut(s) 530, 1029
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 1408
Csp6I GTAC 5 cut(s) 648, 1226, 2063, 2549, 2793
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviQI GTAC 5 cut(s) 648, 1226, 2063, 2549, 2793
EaeI YGGCCR 1 cut(s) 2872
Eam1104I CTCTTC 5 cut(s) 478, 511, 1941, 2594, 2824
EarI CTCTTC 5 cut(s) 478, 511, 1941, 2594, 2824
Ecl136II GAGCTC 1 cut(s) 1393
Eco130I CCWWGG 2 cut(s) 444, 972
Eco24I GRGCYC 1 cut(s) 1395
Eco31I GGTCTC 1 cut(s) 2291
Eco32I GATATC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 1393
Eco57I CTGAAG 3 cut(s) 395, 621, 1686
Eco91I GGTNACC 1 cut(s) 1106
EcoICRI GAGCTC 1 cut(s) 1393
EcoNI CCTNNNNNAGG 1 cut(s) 812
EcoO109I RGGNCCY 1 cut(s) 1408
EcoO65I GGTNACC 1 cut(s) 1106
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 2 cut(s) 1296, 2575
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 444, 972
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 1395
ErhI CCWWGG 2 cut(s) 444, 972
FaqI GGGAC 2 cut(s) 811, 1916
FblI GTMKAC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 1395
FspBI CTAG 9 cut(s) 264, 363, 620, 963, 1023, 1512, 1928, 2204, 2283
GlaI GCGC 2 cut(s) 529, 1028
GsuI CTGGAG 1 cut(s) 1194
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 4 cut(s) 50, 1409, 1969, 2874
HapII CCGG 5 cut(s) 65, 71, 77, 838, 1245
HhaI GCGC 2 cut(s) 530, 1029
Hin1I GRCGYC 1 cut(s) 413
Hin6I GCGC 2 cut(s) 528, 1027
HinP1I GCGC 2 cut(s) 528, 1027
HincII GTYRAC 2 cut(s) 1717, 1852
HindII GTYRAC 2 cut(s) 1717, 1852
HinfI GANTC 8 cut(s) 241, 260, 902, 1340, 1359, 1759, 2033, 2279
HpaI GTTAAC 1 cut(s) 1717
HpaII CCGG 5 cut(s) 65, 71, 77, 838, 1245
HphI GGTGA 6 cut(s) 149, 267, 617, 942, 1493, 1827
Hpy166II GTNNAC 7 cut(s) 105, 650, 896, 950, 1588, 1717, 1852
Hpy188I TCNGA 9 cut(s) 20, 294, 1009, 1284, 1569, 2235, 2629, 2692, 2860
Hpy8I GTNNAC 7 cut(s) 105, 650, 896, 950, 1588, 1717, 1852
Hpy99I CGWCG 5 cut(s) 311, 314, 317, 320, 323
HpyAV CCTTC 7 cut(s) 150, 596, 1661, 2327, 2359, 2522, 2782
HpyCH4III ACNGT 8 cut(s) 102, 217, 617, 999, 1325, 1444, 1565, 1595
HpyCH4IV ACGT 5 cut(s) 413, 594, 694, 1262, 2005
HpyF10VI GCNNNNNNNGC 9 cut(s) 80, 86, 506, 509, 1019, 1033, 1220, 1809, 2027
HpySE526I ACGT 5 cut(s) 413, 594, 694, 1262, 2005
Hsp92I GRCGYC 1 cut(s) 413
HspAI GCGC 2 cut(s) 528, 1027
KspAI GTTAAC 1 cut(s) 1717
LmnI GCTCC 4 cut(s) 73, 79, 454, 2596
Lsp1109I GCAGC 8 cut(s) 67, 487, 496, 1138, 2119, 2337, 2621, 2718
LweI GCATC 7 cut(s) 392, 851, 1000, 1275, 1441, 2279, 2473
MaeI CTAG 9 cut(s) 264, 363, 620, 963, 1023, 1512, 1928, 2204, 2283
MaeII ACGT 5 cut(s) 413, 594, 694, 1262, 2005
MaeIII GTNAC 6 cut(s) 1106, 1113, 1319, 1559, 2566, 2635
MbiI CCGCTC 1 cut(s) 1897
MfeI CAATTG 2 cut(s) 1302, 2777
MflI RGATCY 6 cut(s) 568, 716, 834, 968, 1424, 1924
MhlI GDGCHC 2 cut(s) 898, 1395
MlyI GAGTC 3 cut(s) 235, 1768, 2042
Mph1103I ATGCAT 1 cut(s) 385
MroXI GAANNNNTTC 3 cut(s) 1671, 2316, 2376
MslI CAYNNNNRTG 3 cut(s) 135, 1152, 1730
MspA1I CMGCKG 7 cut(s) 509, 1847, 2030, 2132, 2350, 2495, 2825
MspI CCGG 5 cut(s) 65, 71, 77, 838, 1245
MspR9I CCNGG 4 cut(s) 839, 1245, 1298, 2577
MunI CAATTG 2 cut(s) 1302, 2777
Mva1269I GAATGC 2 cut(s) 385, 1048
MvaI CCWGG 2 cut(s) 1298, 2577
MwoI GCNNNNNNNGC 9 cut(s) 80, 86, 506, 509, 1019, 1033, 1220, 1809, 2027
NciI CCSGG 2 cut(s) 839, 1245
NheI GCTAGC 1 cut(s) 1511
NlaIV GGNNCC 7 cut(s) 69, 75, 450, 1089, 2592, 2854, 2893
NmeAIII GCCGAG 1 cut(s) 2900
NmuCI GTSAC 3 cut(s) 1113, 1319, 2566
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 2 cut(s) 981, 1729
PagI TCATGA 2 cut(s) 1132, 2397
PaqCI CACCTGC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 4 cut(s) 312, 315, 318, 1401
PctI GAATGC 2 cut(s) 385, 1048
PdmI GAANNNNTTC 3 cut(s) 1671, 2316, 2376
PfeI GAWTC 5 cut(s) 260, 902, 1340, 1359, 2279
PflMI CCANNNNNTGG 2 cut(s) 512, 1117
PleI GAGTC 3 cut(s) 235, 1767, 2041
PpsI GAGTC 3 cut(s) 235, 1767, 2041
Psp124BI GAGCTC 1 cut(s) 1395
Psp6I CCWGG 2 cut(s) 1296, 2575
PspEI GGTNACC 1 cut(s) 1106
PspGI CCWGG 2 cut(s) 1296, 2575
PspN4I GGNNCC 7 cut(s) 69, 75, 450, 1089, 2592, 2854, 2893
PspPI GGNCC 1 cut(s) 1408
PstI CTGCAG 1 cut(s) 421
PstNI CAGNNNCTG 5 cut(s) 409, 512, 1117, 1573, 2888
PsuI RGATCY 6 cut(s) 568, 716, 834, 968, 1424, 1924
PvuII CAGCTG 5 cut(s) 509, 1847, 2132, 2495, 2825
RsaI GTAC 5 cut(s) 649, 1227, 2064, 2550, 2794
RsaNI GTAC 5 cut(s) 648, 1226, 2063, 2549, 2793
RseI CAYNNNNRTG 3 cut(s) 135, 1152, 1730
SacI GAGCTC 1 cut(s) 1395
Sau96I GGNCC 1 cut(s) 1408
SchI GAGTC 3 cut(s) 235, 1768, 2042
ScrFI CCNGG 4 cut(s) 839, 1245, 1298, 2577
SduI GDGCHC 2 cut(s) 898, 1395
SfaNI GCATC 7 cut(s) 392, 851, 1000, 1275, 1441, 2279, 2473
SfcI CTRYAG 3 cut(s) 105, 417, 1963
SmiMI CAYNNNNRTG 3 cut(s) 135, 1152, 1730
SmlI CTYRAG 2 cut(s) 1694, 2162
SmoI CTYRAG 2 cut(s) 1694, 2162
SsiI CCGC 6 cut(s) 1612, 1885, 1897, 1976, 2028, 2348
SspMI CTAG 9 cut(s) 264, 363, 620, 963, 1023, 1512, 1928, 2204, 2283
SstI GAGCTC 1 cut(s) 1395
StyD4I CCNGG 4 cut(s) 837, 1243, 1296, 2575
StyI CCWWGG 2 cut(s) 444, 972
TaaI ACNGT 8 cut(s) 102, 217, 617, 999, 1325, 1444, 1565, 1595
TaiI ACGT 5 cut(s) 416, 597, 697, 1265, 2008
TaqI TCGA 3 cut(s) 244, 1766, 2363
TatI WGTACW 2 cut(s) 1225, 2062
TauI GCSGC 3 cut(s) 1979, 2030, 2350
TfiI GAWTC 5 cut(s) 260, 902, 1340, 1359, 2279
TscAI CASTG 3 cut(s) 718, 1122, 1819
TseFI GTSAC 3 cut(s) 1113, 1319, 2566
TseI GCWGC 8 cut(s) 80, 500, 509, 1126, 2132, 2350, 2609, 2731
Tsp45I GTSAC 3 cut(s) 1113, 1319, 2566
TspGWI ACGGA 2 cut(s) 1154, 1734
TspRI CASTG 3 cut(s) 718, 1122, 1819
Van91I CCANNNNNTGG 2 cut(s) 512, 1117
VneI GTGCAC 1 cut(s) 894
XagI CCTNNNNNAGG 1 cut(s) 812
XapI RAATTY 7 cut(s) 145, 396, 550, 1530, 2179, 2453, 2683
XceI RCATGY 2 cut(s) 981, 1729
XmiI GTMKAC 1 cut(s) 104
XmnI GAANNNNTTC 3 cut(s) 1671, 2316, 2376
XspI CTAG 9 cut(s) 264, 363, 620, 963, 1023, 1512, 1928, 2204, 2283
ZraI GACGTC 1 cut(s) 414
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.