Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037787.1

Orthogroup ID

OG0005505

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 786

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037787.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 401 bp

atgggaattccacagaacctgacgtctgcagatgaaagtgatgatgatgaaaccaaggctcctcgcaaatctggtggtagaggtcgtggtggaagaggtagttcatcggctgcaccagctgctggaagaggcagaggcgctggacggggtggttttatgaattttggcgaaaggaaagatcctccacacaaaggagaaaaggacgttcctgaaggtgatccaaactgtctagctggtttaactttcgtaataagtggtacacttgatagtttggaaagagaggaggcagaagatttgataaaacgccatggtggtcgtatcactggatctgtcagcaagaaaacgagctatcttttatgtgatgaagatattgagggcaggaaatcctcaaaagccaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000280 GO:0000712 GO:0000723 GO:0000731 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006278 GO:0006281 GO:0006283 GO:0006289 GO:0006296 GO:0006297 GO:0006301 GO:0006310 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008047 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010833 GO:0016043 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019985 GO:0022402 GO:0022414 GO:0030234 GO:0030554 GO:0031056 GO:0031060 GO:0031323 GO:0031326 GO:0031399 GO:0031935 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032268 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033043 GO:0033044 GO:0033260 GO:0033554 GO:0033683 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0035825 GO:0036094 GO:0042221 GO:0042276 GO:0042592 GO:0042769 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0045132 GO:0046483 GO:0048285 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051246 GO:0051252 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051570 GO:0051606 GO:0051716 GO:0060249 GO:0060255 GO:0060968 GO:0061982 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:0097367 GO:0098772 GO:0098813 GO:0140013 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1902275 GO:1903046 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA BRCT RFC1

Protein Analysis

133

Amino Acids

13.96

Weight (kDa)

7.77

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22010 AT5G22010
fragaria_vesca	FvH4_3g28250 FvH4_3g28250
malus_domestica	MD02G1244300.v1.1 MD02G1244400.v1.1 MD05G1047200.v1.1 MD07G1072700.v1.1
prunus_persica	Prupe.8G068000_v2.0.a1 Prupe.8G068000_v2.0.a1
pyrus_communis	pycom02g21020 pycom02g21030 pycom07g05580
rosa_chinensis	RchiOBHm_Chr5g0051061
rosa_laevigata	RLG00000022682 RLG00000034750
rosa_multiflora	Rmu_sc0000446.1_g000024 Rmu_sc0037787.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029410
rosa_rugosa	Rorug05G0265800 Rorug05G0265900.1 Rorug05G0266000 Rorug06G0059200
rosa_samantha	Rh5AG338000 Rh5BG347700 Rh5CG375100 Rh5DG360800
rosa_wichuraiana	Rw0G023630 Rw5G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	122
AclWI	GGATC	3 cut(s)	173, 212, 334
AcsI	RAATTY	2 cut(s)	6, 160
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	122, 191
AluBI	AGCT	3 cut(s)	119, 233, 348
AluI	AGCT	3 cut(s)	119, 233, 348
AlwI	GGATC	3 cut(s)	173, 212, 334
AlwNI	CAGNNNCTG	2 cut(s)	19, 122
ApeKI	GCWGC	2 cut(s)	110, 119
ApoI	RAATTY	2 cut(s)	6, 160
AspLEI	GCGC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	97, 106
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	2 cut(s)	111, 120
BlsI	GCNGC	2 cut(s)	112, 121
BmiI	GGNNCC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	54, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 191
Bse1I	ACTGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	54, 307
BseLI	CCNNNNNNNGG	2 cut(s)	122, 191
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	2 cut(s)	51, 296
BseXI	GCAGC	2 cut(s)	97, 106
BsgI	GTGCAG	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	122, 191
Bsp143I	GATC	3 cut(s)	178, 217, 326
Bsp19I	CCATGG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	3 cut(s)	173, 212, 334
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	54, 307
BssMI	GATC	3 cut(s)	178, 217, 326
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	54, 307
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	88, 121
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	181, 220, 329
BstMBI	GATC	3 cut(s)	178, 217, 326
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 119
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	97, 106
BstX2I	RGATCY	2 cut(s)	178, 326
BstYI	RGATCY	2 cut(s)	178, 326
BtgI	CCRYGG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	321
CaiI	CAGNNNCTG	2 cut(s)	19, 122
CfoI	GCGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	258
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	6 cut(s)	59, 110, 119, 233, 348, 395
CviKI_1	RGCY	6 cut(s)	59, 110, 119, 233, 348, 395
CviQI	GTAC	1 cut(s)	258
DpnI	GATC	3 cut(s)	180, 219, 328
DpnII	GATC	3 cut(s)	178, 217, 326
Eam1104I	CTCTTC	2 cut(s)	88, 121
EarI	CTCTTC	2 cut(s)	88, 121
Eco130I	CCWWGG	2 cut(s)	54, 307
Eco57I	CTGAAG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	54, 307
ErhI	CCWWGG	2 cut(s)	54, 307
FaeI	CATG	1 cut(s)	311
FaiI	YATR	3 cut(s)	158, 309, 358
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	111, 120
Fsp4HI	GCNGC	2 cut(s)	111, 120
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	111, 120
HaeII	RGCGCY	1 cut(s)	141
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	23, 204
HpyCH4V	TGCA	2 cut(s)	29, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 119
HpySE526I	ACGT	2 cut(s)	23, 204
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	178, 217, 326
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	32, 57, 108, 126, 129, 219, 222, 309, 364
Lsp1109I	GCAGC	2 cut(s)	97, 106
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	23, 204
MalI	GATC	3 cut(s)	180, 219, 328
MboI	GATC	3 cut(s)	178, 217, 326
MboII	GAAGA	4 cut(s)	105, 138, 302, 377
MflI	RGATCY	2 cut(s)	178, 326
MluCI	AATT	2 cut(s)	6, 160
MseI	TTAA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	116, 119
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	3 cut(s)	178, 217, 326
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	1 cut(s)	60
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	112, 121
PspN4I	GGNNCC	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	2 cut(s)	19, 122
PsuI	RGATCY	2 cut(s)	178, 326
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	2 cut(s)	111, 120
Sau3AI	GATC	3 cut(s)	178, 217, 326
SetI	ASST	9 cut(s)	21, 26, 85, 100, 121, 207, 217, 235, 350
SfcI	CTRYAG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	6, 160
SspMI	CTAG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	54, 307
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	2 cut(s)	26, 207
TasI	AATT	2 cut(s)	6, 160
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	110, 119
TspDTI	ATGAA	5 cut(s)	48, 63, 93, 173, 378
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	122
XapI	RAATTY	2 cut(s)	6, 160
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.