Rh5DG360800

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005505
Physical Location & Seq
Forward (+)
53954642 .. 53967884
13243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG360800.1

Sequence Viewer

Length: 2793 bp
ATGTCGCAGGCAGATATCAGAAAGTGGTTTATGAAATCGCATGACAAGGCCAATGCCTCCAAACCGGCTCCGGCTCCGGCTCCGGCTGCTTCTGCTTTGCCGAAACAGTCTACAGACCCCCCTCAACAACAGAATGTGCATGTAGGTGAAGAAAATTCAGGCAGAAGGAAAACCAGCAAGTATTTTCCTCCAAATAAACCAAAGCCGAATGAGGAAAAGGAAACCGTTCAAGTTCCAGCAAAGCGAAAGACTCGACCTGATCCTGTTGAATCTAGCAGACCCTCACCTGCAAAAAAAGTTCAGAAAGTTGCTGATGATGACGACGACGACGATTTTGTTTTGCCTCAGTCTAAAAAGAAAGAAGCCACGCCTAGCAAGAAACTGAAGAATGCATCTGGCATGGGAATTCCACAGAACCTGACGTCTGCAGATGAAAGTGATGATGATGAAACCAAGGCTTCTCGCAAATCTGGTGGTAGAGGTCGTGGTGGAAGAGGTAGTTCATCAGCTGCACCAGCTGCTGGAAGAGGCAGAGGCGCTGGACGGGGTGGGTTTATGAATTTTGGCGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGACGTTCCTGAAGGTGATCCAAACTGTCTAGCTGGTTTAACTTTCGTAATAAGTGGTACACTTGATAGTTTGGAAAGAGAGGAGGCAGAAGATTTGATAAAACGCCATGGTGGTCGTATCACTGGATCTGTCAGCAAGAAAACGAGCTATCTTTTATGTGATGAAGATATTGAGGGCAGGAAATCCTCAAAAGCCAAAGAACTTGGGACGGCTTTCCTTACTGAGGATGGATTGTTTGATAAGATTCGGGCATCAATTCGTGCTGAAGCACCTGTGAAAGAAGAAAAGAAACCTGTGGATAGTGCACGAGAATCATCTTTGGCTAATAAAAGCCCTAAGAAAGTAGCATTAAAGGGTTCACCAGATTGCACTAGCAGCTCCTTGGCATGTAGGGTATCCCACAAACAGTCACCATCAGATGCTTCCCTTGCTAGGCGCAAAGAGCAAACTACCGAGCATTCTGCTTTGACATGGACAGAAAAATATAGACCAAAGGTTCCAAATGACATTATTGGTAACCAGTCACTGGTAAAGCAGCTTCATGATTGGTTGGCACATTGGCATGAGCAATTCCGTGATACTGGAGTTAAGAAAAAAGGCAATAAACCAAACAATACAGGTGCTAAAAAAGCTGTACTATTAAGTGGAACACCCGGAATAGGGAAAACAACGTCAGCAAAGTTAGTCAGTCAGATGCTCGGTTTCCAGGCAATTGAGGTAAATGCAAGTGACAGTCGTGGGAAAGCTGATTCCAAGATTGTCAAGGGAATCGGTGGAAGCAATGCAAACTCTGTTAAAGAGCTCGTCAGCAACGAGTCCCTAAGCATGGATAGATCTAAGCATCCCAAAACTGTGCTGATTATGGATGAGGTTGATGGGATGTCTGCTGGTGATCGGGGTGGAGTTGCTGATCTTATTGCTAGCATAAAGAGTTCTAAAATTCCCATTATCTGCATTTGTAATGATCGTTACAGTCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTCAGCTTCCGCAAACCCACTAAACAACAGATGGCAAAGAGGTTGAAGCAAGTTGCAAATGCTGAAGGACTTCAAGTGAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTTAACGGAGACATGCGAATGGCACTTAATCAATTGCACTATATGAGTCTCTCGATGTCTGTCATAAAATATGAAGATATAAGGCAACGCCTACTAAGCAGTGCAAAGGATGAGGATATTTCACCATTCACAGCTGTTGACAAGCTGTTTGGTTTCAATGCTGGAAAGTTGCGGATGGATGAGCGGTTTGACCTGAGCATGAGTGATCCAGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAACTACAGGGCAAGTGCGGCTGTTAAGGATGATAGTGGGGTTGAACGTATGAACTTGATCGCCCGTGCCGCTGAGTCTATTGGAAATGGGGATATTATCAATGTACAAATTAGAAAATATCGCCAATGGCAGCTTTCCCAAAGTTGTTCTCTGTCATCCAGCATAATTCCAGCTGCTTTGTTGCGTGGGCAAAGGGAGACACTTGAGCAGGGAGAAAGAAATTTTAATAGATTTGGAGGTTGGCTAGGAAAGAACTCAACATTAGGCAAAAATCTGAGGCTCTTAGAAGATTTGCATTTCCATCTTCTTGCATCTCGTGAATCTAGTTCAGGGAGGGAGACCCTGCGAGTTGAATACCTTCCCCTACTTCTGAAACGATTGTCTGTGCCGCTGCGTAAATTGTCGAAGGATGAAGCTGTTCAGGAAGTTGTGGAGTTCATGAATACTTACTCCATTAGTCAAGATGACTATGATACTATTGTAGAGTTATCAAAATTTCAGGGGCATCCAAATCCGCTGGATGGTGTTCAGCCAGCTGTAAAAGCAGCTCTTACAAAAGCATACAAAGAAGGAAGCAAATCAAGGATGGTACGAGTTGCAGAGTTTGTCACTTTCCCTGGAATGAAAAAGGCTCCTAAGAAGAGGATCGCAGCTATTTTAGAACCATCTGACGACGTAACTGGGGAGAACAATAATGATACTTTGGTTCTAAGTGAAGAAGAAAATTCATCTGATACAGAGGACTTGGGTATGTTTTTCCATTTTCGAATTGTTGCTGATTCATATCTGTCTGCAGAATATTGCTTTGTTGTGGGACTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000280 GO:0000712 GO:0000723 GO:0000731 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006278 GO:0006281 GO:0006283 GO:0006289 GO:0006296 GO:0006297 GO:0006301 GO:0006310 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008047 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010833 GO:0016043 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019985 GO:0022402 GO:0022414 GO:0030234 GO:0030554 GO:0031056 GO:0031060 GO:0031323 GO:0031326 GO:0031399 GO:0031935 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032268 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033043 GO:0033044 GO:0033260 GO:0033554 GO:0033683 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0035825 GO:0036094 GO:0042221 GO:0042276 GO:0042592 GO:0042769 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0045132 GO:0046483 GO:0048285 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051246 GO:0051252 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051570 GO:0051606 GO:0051716 GO:0060249 GO:0060255 GO:0060968 GO:0061982 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:0097367 GO:0098772 GO:0098813 GO:0140013 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1902275 GO:1903046 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
AAA BRCT RFC1

Protein Analysis

930

Amino Acids

102.22

Weight (kDa)

9.15

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 207 - 280 5.2e-17 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 222 - 270 4.5e-06 twin BRCT domain
AAA_22 PF13401 409 - 499 9.2e-06 AAA domain
AAA PF00004 412 - 525 4.7e-12 ATPase family associated with various cellular activities (AAA)
AAA_lid_RFC1 PF25361 546 - 601 4.1e-08 RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid PF21960 550 - 591 6.6e-07 RCF1/5-like, AAA+ ATPase lid domain
RFC1 PF08519 683 - 845 4.7e-41 Replication factor RFC1 C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
AatII GACGTC 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 295
AccB7I CCANNNNNTGG 2 cut(s) 521, 1126
AccBSI CCGCTC 1 cut(s) 1906
AccI GTMKAC 1 cut(s) 110
AciI CCGC 7 cut(s) 1621, 1894, 1906, 1985, 2037, 2357, 2483
AclWI GGATC 6 cut(s) 254, 572, 611, 733, 1922, 2621
AcsI RAATTY 7 cut(s) 154, 405, 559, 1539, 2188, 2462, 2692
AcuI CTGAAG 4 cut(s) 404, 630, 885, 1695
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 4 cut(s) 658, 1236, 2073, 2559
AfiI CCNNNNNNNGG 9 cut(s) 521, 590, 823, 1032, 1126, 1259, 1260, 1426, 2489
AgsI TTSAA 7 cut(s) 230, 269, 1657, 1685, 1879, 2012, 2321
AjnI CCWGG 2 cut(s) 1305, 2584
Alw21I GWGCWC 2 cut(s) 907, 1404
Alw26I GTCTC 4 cut(s) 1725, 1775, 2159, 2300
Alw44I GTGCAC 1 cut(s) 903
AlwI GGATC 6 cut(s) 254, 572, 611, 733, 1922, 2621
AlwNI CAGNNNCTG 4 cut(s) 418, 521, 1126, 1582
AoxI GGCC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 903
ApoI RAATTY 7 cut(s) 154, 405, 559, 1539, 2188, 2462, 2692
ArsI GACNNNNNNTTYG 4 cut(s) 317, 349, 1853, 1885
Asp700I GAANNNNTTC 4 cut(s) 225, 1680, 2325, 2385
AspLEI GCGC 2 cut(s) 539, 1038
AsuC2I CCSGG 1 cut(s) 1254
AsuHPI GGTGA 7 cut(s) 158, 276, 626, 951, 1002, 1502, 1836
AsuII TTCGAA 1 cut(s) 2734
AsuNHI GCTAGC 1 cut(s) 1520
BaeGI GKGCMC 1 cut(s) 907
BaeI ACNNNNGTAYC 6 cut(s) 1170, 1203, 2433, 2466, 2658, 2691
BanII GRGCYC 1 cut(s) 1404
BarI GAAGNNNNNNTAC 2 cut(s) 1122, 1154
BauI CACGAG 2 cut(s) 906, 2283
Bbv12I GWGCWC 2 cut(s) 907, 1404
BccI CCATC 9 cut(s) 821, 1021, 1469, 1636, 1891, 2277, 2483, 2548, 2641
BceAI ACGGC 1 cut(s) 825
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciT130I CCWGG 2 cut(s) 1307, 2586
BciVI GTATCC 1 cut(s) 1006
BcnI CCSGG 1 cut(s) 1254
BcoDI GTCTC 4 cut(s) 1725, 1775, 2159, 2300
BfaI CTAG 9 cut(s) 273, 372, 629, 972, 1032, 1521, 1937, 2213, 2292
BfmI CTRYAG 4 cut(s) 111, 426, 1972, 2760
BfoI RGCGCY 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 295
BfuI GTATCC 1 cut(s) 1006
BglII AGATCT 2 cut(s) 1433, 1933
Bme1390I CCNGG 3 cut(s) 1254, 1307, 2586
BmiI GGNNCC 5 cut(s) 69, 75, 81, 1098, 2601
BmrFI CCNGG 3 cut(s) 1254, 1307, 2586
BmrI ACTGGG 1 cut(s) 2658
BmsI GCATC 7 cut(s) 401, 860, 1009, 1284, 1450, 2288, 2482
BmtI GCTAGC 1 cut(s) 1524
BmuI ACTGGG 1 cut(s) 2658
BpmI CTGGAG 1 cut(s) 1203
Bpu10I CCTNAGC 2 cut(s) 1421, 1916
Bpu14I TTCGAA 1 cut(s) 2734
BpuEI CTTGAG 2 cut(s) 1724, 2192
BpuMI CCSGG 1 cut(s) 1254
BsaBI GATNNNNATC 2 cut(s) 1932, 2751
BsaHI GRCGYC 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 2300
BsaJI CCNNGG 4 cut(s) 453, 706, 981, 2584
Bsc4I CCNNNNNNNGG 9 cut(s) 521, 590, 823, 1032, 1126, 1259, 1260, 1426, 2489
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 5 cut(s) 727, 1120, 1131, 1186, 2653
Bse3DI GCAATG 1 cut(s) 1387
Bse8I GATNNNNATC 2 cut(s) 1932, 2751
BseBI CCWGG 2 cut(s) 1307, 2586
BseDI CCNNGG 4 cut(s) 453, 706, 981, 2584
BseJI GATNNNNATC 2 cut(s) 1932, 2751
BseLI CCNNNNNNNGG 9 cut(s) 521, 590, 823, 1032, 1126, 1259, 1260, 1426, 2489
BseMI GCAATG 1 cut(s) 1387
BseMII CTCAG 6 cut(s) 359, 813, 1627, 1907, 2031, 2234
BseNI ACTGG 5 cut(s) 727, 1120, 1131, 1186, 2653
BseRI GAGGAG 1 cut(s) 695
BseSI GKGCMC 1 cut(s) 907
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 907, 1404
BsiSI CCGG 5 cut(s) 65, 71, 77, 83, 1254
BslFI GGGAC 3 cut(s) 820, 1402, 1925
BslI CCNNNNNNNGG 9 cut(s) 521, 590, 823, 1032, 1126, 1259, 1260, 1426, 2489
BsmAI GTCTC 4 cut(s) 1725, 1775, 2159, 2300
BsmFI GGGAC 3 cut(s) 820, 1402, 1925
BsmI GAATGC 2 cut(s) 394, 1057
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 2300
Bsp119I TTCGAA 1 cut(s) 2734
Bsp1286I GDGCHC 2 cut(s) 907, 1404
Bsp1407I TGTACA 1 cut(s) 2071
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 7 cut(s) 1621, 1894, 1906, 1985, 2037, 2357, 2483
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 6 cut(s) 358, 814, 1626, 1908, 2032, 2235
BspHI TCATGA 2 cut(s) 1141, 2406
BspLI GGNNCC 5 cut(s) 69, 75, 81, 1098, 2601
BspMAI CTGCAG 2 cut(s) 430, 2764
BspMI ACCTGC 1 cut(s) 295
BspOI GCTAGC 1 cut(s) 1524
BspPI GGATC 6 cut(s) 254, 572, 611, 733, 1922, 2621
BspT104I TTCGAA 1 cut(s) 2734
BspTNI GGTCTC 1 cut(s) 2300
BsrBI CCGCTC 1 cut(s) 1906
BsrDI GCAATG 1 cut(s) 1387
BsrFI RCCGGY 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 2071
BsrI ACTGG 5 cut(s) 727, 1120, 1131, 1186, 2653
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 4 cut(s) 453, 706, 981, 2584
BssNI GRCGYC 1 cut(s) 422
BssSI CACGAG 2 cut(s) 906, 2283
BssT1I CCWWGG 3 cut(s) 453, 706, 981
Bst2BI CACGAG 2 cut(s) 906, 2283
Bst2UI CCWGG 2 cut(s) 1307, 2586
Bst4CI ACNGT 8 cut(s) 108, 226, 626, 1008, 1334, 1453, 1574, 1604
Bst6I CTCTTC 4 cut(s) 487, 520, 1950, 2603
BstACI GRCGYC 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 2071
BstBI TTCGAA 1 cut(s) 2734
BstC8I GCNNGC 3 cut(s) 9, 1522, 2502
BstDSI CCRYGG 1 cut(s) 706
BstEII GGTNACC 1 cut(s) 1115
BstENI CCTNNNNNAGG 1 cut(s) 821
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 2 cut(s) 539, 1038
BstMAI GTCTC 4 cut(s) 1725, 1775, 2159, 2300
BstNI CCWGG 2 cut(s) 1307, 2586
BstNSI RCATGY 3 cut(s) 143, 990, 1738
BstPI GGTNACC 1 cut(s) 1115
BstSCI CCNGG 3 cut(s) 1252, 1305, 2584
BstSFI CTRYAG 4 cut(s) 111, 426, 1972, 2760
BstSLI GKGCMC 1 cut(s) 907
BstX2I RGATCY 4 cut(s) 577, 725, 1433, 1933
BstYI RGATCY 4 cut(s) 577, 725, 1433, 1933
BsuI GTATCC 1 cut(s) 1006
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 706
BtsI GCAGTG 1 cut(s) 1828
BtsIMutI CAGTG 3 cut(s) 720, 1124, 1828
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 3 cut(s) 9, 1522, 2502
CaiI CAGNNNCTG 4 cut(s) 418, 521, 1126, 1582
CciI TCATGA 2 cut(s) 1141, 2406
CfoI GCGC 2 cut(s) 539, 1038
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 4 cut(s) 657, 1235, 2072, 2558
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviQI GTAC 4 cut(s) 657, 1235, 2072, 2558
Eam1104I CTCTTC 4 cut(s) 487, 520, 1950, 2603
EarI CTCTTC 4 cut(s) 487, 520, 1950, 2603
Ecl136II GAGCTC 1 cut(s) 1402
Eco130I CCWWGG 3 cut(s) 453, 706, 981
Eco24I GRGCYC 1 cut(s) 1404
Eco31I GGTCTC 1 cut(s) 2300
Eco32I GATATC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 1402
Eco57I CTGAAG 4 cut(s) 404, 630, 885, 1695
Eco91I GGTNACC 1 cut(s) 1115
EcoICRI GAGCTC 1 cut(s) 1402
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoO65I GGTNACC 1 cut(s) 1115
EcoRI GAATTC 1 cut(s) 405
EcoRII CCWGG 2 cut(s) 1305, 2584
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 3 cut(s) 453, 706, 981
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 1404
ErhI CCWWGG 3 cut(s) 453, 706, 981
FalI AAGNNNNNCTT 2 cut(s) 2502, 2534
FaqI GGGAC 3 cut(s) 820, 1402, 1925
FblI GTMKAC 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 1404
FspBI CTAG 9 cut(s) 273, 372, 629, 972, 1032, 1521, 1937, 2213, 2292
GlaI GCGC 2 cut(s) 538, 1037
GsuI CTGGAG 1 cut(s) 1203
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 1 cut(s) 50
HapII CCGG 5 cut(s) 65, 71, 77, 83, 1254
HhaI GCGC 2 cut(s) 539, 1038
Hin1I GRCGYC 1 cut(s) 422
Hin6I GCGC 2 cut(s) 537, 1036
HinP1I GCGC 2 cut(s) 537, 1036
HincII GTYRAC 2 cut(s) 1726, 1861
HindII GTYRAC 2 cut(s) 1726, 1861
HpaI GTTAAC 1 cut(s) 1726
HpaII CCGG 5 cut(s) 65, 71, 77, 83, 1254
HphI GGTGA 7 cut(s) 158, 276, 626, 951, 1002, 1502, 1836
Hpy166II GTNNAC 7 cut(s) 111, 659, 905, 959, 1597, 1726, 1861
Hpy188I TCNGA 9 cut(s) 20, 303, 1018, 1293, 1578, 2244, 2340, 2638, 2701
Hpy8I GTNNAC 7 cut(s) 111, 659, 905, 959, 1597, 1726, 1861
Hpy99I CGWCG 4 cut(s) 326, 329, 332, 2645
HpyAV CCTTC 6 cut(s) 159, 605, 1670, 2336, 2368, 2531
HpyCH4III ACNGT 8 cut(s) 108, 226, 626, 1008, 1334, 1453, 1574, 1604
HpyCH4IV ACGT 5 cut(s) 422, 603, 1271, 2014, 2643
HpySE526I ACGT 5 cut(s) 422, 603, 1271, 2014, 2643
Hsp92I GRCGYC 1 cut(s) 422
HspAI GCGC 2 cut(s) 537, 1036
KspAI GTTAAC 1 cut(s) 1726
LmnI GCTCC 5 cut(s) 73, 79, 85, 983, 2605
LweI GCATC 7 cut(s) 401, 860, 1009, 1284, 1450, 2288, 2482
MaeI CTAG 9 cut(s) 273, 372, 629, 972, 1032, 1521, 1937, 2213, 2292
MaeII ACGT 5 cut(s) 422, 603, 1271, 2014, 2643
MaeIII GTNAC 7 cut(s) 1008, 1115, 1122, 1328, 1568, 2575, 2644
MbiI CCGCTC 1 cut(s) 1906
MfeI CAATTG 2 cut(s) 1311, 1754
MflI RGATCY 4 cut(s) 577, 725, 1433, 1933
MhlI GDGCHC 2 cut(s) 907, 1404
MlyI GAGTC 4 cut(s) 244, 1424, 1777, 2051
Mph1103I ATGCAT 1 cut(s) 394
MroXI GAANNNNTTC 4 cut(s) 225, 1680, 2325, 2385
MslI CAYNNNNRTG 3 cut(s) 144, 1161, 1739
MspA1I CMGCKG 8 cut(s) 509, 518, 1856, 2039, 2141, 2359, 2485, 2504
MspI CCGG 5 cut(s) 65, 71, 77, 83, 1254
MspR9I CCNGG 3 cut(s) 1254, 1307, 2586
MunI CAATTG 2 cut(s) 1311, 1754
Mva1269I GAATGC 2 cut(s) 394, 1057
MvaI CCWGG 2 cut(s) 1307, 2586
NciI CCSGG 1 cut(s) 1254
NcoI CCATGG 1 cut(s) 706
NheI GCTAGC 1 cut(s) 1520
NlaIV GGNNCC 5 cut(s) 69, 75, 81, 1098, 2601
NmuCI GTSAC 4 cut(s) 1008, 1122, 1328, 2575
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 3 cut(s) 143, 990, 1738
NspV TTCGAA 1 cut(s) 2734
PagI TCATGA 2 cut(s) 1141, 2406
PaqCI CACCTGC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 2 cut(s) 327, 1410
PctI GAATGC 2 cut(s) 394, 1057
PdmI GAANNNNTTC 4 cut(s) 225, 1680, 2325, 2385
PfeI GAWTC 7 cut(s) 269, 844, 911, 1349, 1368, 2288, 2747
PflMI CCANNNNNTGG 2 cut(s) 521, 1126
PleI GAGTC 4 cut(s) 244, 1423, 1776, 2050
PpsI GAGTC 4 cut(s) 244, 1423, 1776, 2050
Psp124BI GAGCTC 1 cut(s) 1404
Psp6I CCWGG 2 cut(s) 1305, 2584
PspEI GGTNACC 1 cut(s) 1115
PspGI CCWGG 2 cut(s) 1305, 2584
PspN4I GGNNCC 5 cut(s) 69, 75, 81, 1098, 2601
PstI CTGCAG 2 cut(s) 430, 2764
PstNI CAGNNNCTG 4 cut(s) 418, 521, 1126, 1582
PsuI RGATCY 4 cut(s) 577, 725, 1433, 1933
PvuII CAGCTG 5 cut(s) 509, 518, 1856, 2141, 2504
RsaI GTAC 4 cut(s) 658, 1236, 2073, 2559
RsaNI GTAC 4 cut(s) 657, 1235, 2072, 2558
RseI CAYNNNNRTG 3 cut(s) 144, 1161, 1739
SacI GAGCTC 1 cut(s) 1404
SchI GAGTC 4 cut(s) 244, 1424, 1777, 2051
ScrFI CCNGG 3 cut(s) 1254, 1307, 2586
SduI GDGCHC 2 cut(s) 907, 1404
SfaNI GCATC 7 cut(s) 401, 860, 1009, 1284, 1450, 2288, 2482
SfcI CTRYAG 4 cut(s) 111, 426, 1972, 2760
SfuI TTCGAA 1 cut(s) 2734
SmiMI CAYNNNNRTG 3 cut(s) 144, 1161, 1739
SmlI CTYRAG 2 cut(s) 1703, 2171
SmoI CTYRAG 2 cut(s) 1703, 2171
SsiI CCGC 7 cut(s) 1621, 1894, 1906, 1985, 2037, 2357, 2483
SspI AATATT 1 cut(s) 2768
SspMI CTAG 9 cut(s) 273, 372, 629, 972, 1032, 1521, 1937, 2213, 2292
SstI GAGCTC 1 cut(s) 1404
StyD4I CCNGG 3 cut(s) 1252, 1305, 2584
StyI CCWWGG 3 cut(s) 453, 706, 981
TaaI ACNGT 8 cut(s) 108, 226, 626, 1008, 1334, 1453, 1574, 1604
TaiI ACGT 5 cut(s) 425, 606, 1274, 2017, 2646
TaqI TCGA 4 cut(s) 253, 1775, 2372, 2734
TatI WGTACW 2 cut(s) 1234, 2071
TauI GCSGC 3 cut(s) 1988, 2039, 2359
TfiI GAWTC 7 cut(s) 269, 844, 911, 1349, 1368, 2288, 2747
TscAI CASTG 3 cut(s) 727, 1131, 1828
TseFI GTSAC 4 cut(s) 1008, 1122, 1328, 2575
Tsp45I GTSAC 4 cut(s) 1008, 1122, 1328, 2575
TspGWI ACGGA 2 cut(s) 1163, 1743
TspRI CASTG 3 cut(s) 727, 1131, 1828
Van91I CCANNNNNTGG 2 cut(s) 521, 1126
VneI GTGCAC 1 cut(s) 903
XagI CCTNNNNNAGG 1 cut(s) 821
XapI RAATTY 7 cut(s) 154, 405, 559, 1539, 2188, 2462, 2692
XceI RCATGY 3 cut(s) 143, 990, 1738
XmiI GTMKAC 1 cut(s) 110
XmnI GAANNNNTTC 4 cut(s) 225, 1680, 2325, 2385
XspI CTAG 9 cut(s) 273, 372, 629, 972, 1032, 1521, 1937, 2213, 2292
ZraI GACGTC 1 cut(s) 423
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.