Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8274617.1

Orthogroup ID

OG0002016

Physical Location & Seq

Genomic Coordinates Forward (+)

53 .. 828

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8274617.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcttgatgagtctcgagtagtaatgcactcttctgattccatagctccagttggggtgcttcatccggtggcttttcatttgcaaagtaaggcagagtcccattctttggagagcaatgacaatgctcatgagatctgtgaagagagggtgggttctctatttgaagtgcaaggagacacacaagcatttgatgccatttgccaggctgatgctgcagtggatgtcttagttaaacttcctgaacataaacttcacatttcaagaacacaaaaggacgatacattttctatttgttgctggttgcaagattcttgtacaacttctgcaggtttgcaagaagacctggaggctgttctgaagaaaattgaatcgctactcgtggaatatggttttggttgggaatatgtgctctacattcatctttatattgctgatatgggtgggttttcttcagcaaatgatacatatgtgagatatataacccatgagaagtgcccgtttggtgttccatctcgcagtacagttgaactacctttgttgcaagtgggtttagccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthami_syn_2 Pkinase Ribonuc_L-PSP

Protein Analysis

187

Amino Acids

20.77

Weight (kDa)

4.81

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04480
fragaria_vesca	FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810
malus_domestica	MD04G1230700.v1.1
prunus_persica	Prupe.6G350500_v2.0.a1
pyrus_communis	pycom04g20440
rosa_chinensis	RchiOBHm_Chr2g0149091 RchiOBHm_Chr3g0449521 RchiOBHm_Chr6g0277751
rosa_laevigata	RLG00000025818 RLG00000036278
rosa_multiflora	Rmu_co8274617.1_g000001 Rmu_sc0000430.1_g000014
rosa_roxburghii	Rroxscaffold_6G00427480 Rroxscaffold_7G00175750
rosa_rugosa	Rorug02G0622400 Rorug02G0622500 Rorug02G0622600
rosa_samantha	Rh2AG410700 Rh2AG659700 Rh2BG670500 Rh2BG670600 Rh2CG396800 Rh3AG020100 Rh3BG020200 Rh3CG018900 Rh3DG020100
rosa_wichuraiana	Rw2G033330 Rw2G033560 Rw3G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	109
AcuI	CTGAAG	2 cut(s)	380, 438
AfaI	GTAC	2 cut(s)	319, 523
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	167, 264, 371, 530
AjnI	CCWGG	3 cut(s)	204, 345, 557
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	18, 171
Ama87I	CYCGRG	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	500
BaeI	ACNNNNGTAYC	2 cut(s)	456, 489
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	520
BciT130I	CCWGG	3 cut(s)	206, 347, 559
BcoDI	GTCTC	2 cut(s)	18, 171
BfmI	CTRYAG	2 cut(s)	216, 327
BfuAI	ACCTGC	1 cut(s)	320
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	3 cut(s)	206, 347, 559
BmeT110I	CYCGRG	1 cut(s)	15
BmrFI	CCNGG	3 cut(s)	206, 347, 559
BmsI	GCATC	2 cut(s)	184, 202
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	2 cut(s)	33, 368
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	206, 347, 559
BseGI	GGATG	2 cut(s)	64, 229
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	18, 171
BsmFI	GGGAC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	414, 500
Bsp1407I	TGTACA	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	130
BspMAI	CTGCAG	2 cut(s)	220, 331
BspMI	ACCTGC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	3 cut(s)	206, 347, 559
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	2 cut(s)	37, 138
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	64, 229
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	2 cut(s)	18, 171
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 215
BstNI	CCWGG	3 cut(s)	206, 347, 559
BstSCI	CCNGG	3 cut(s)	204, 345, 557
BstSFI	CTRYAG	2 cut(s)	216, 327
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	64, 229
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	320
CciI	TCATGA	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	318, 522
CviAII	CATG	2 cut(s)	131, 488
CviJI	RGCY	5 cut(s)	47, 74, 209, 353, 557
CviKI_1	RGCY	5 cut(s)	47, 74, 209, 353, 557
CviQI	GTAC	2 cut(s)	318, 522
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	37, 138
EarI	CTCTTC	2 cut(s)	37, 138
Eco57I	CTGAAG	2 cut(s)	380, 438
Eco88I	CYCGRG	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	204, 345, 557
FaeI	CATG	2 cut(s)	134, 491
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	130, 487
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	51, 236
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
GsuI	CTGGAG	2 cut(s)	33, 368
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	2 cut(s)	134, 491
HinfI	GANTC	5 cut(s)	11, 38, 98, 311, 371
HpaII	CCGG	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	37, 360
Hpy188III	TCNNGA	4 cut(s)	15, 131, 242, 264
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4V	TGCA	8 cut(s)	28, 85, 172, 218, 307, 329, 337, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 215
HpyF3I	CTNAG	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	134, 491
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	184, 202
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	5 cut(s)	24, 155, 353, 373, 444
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	414, 500
MluCI	AATT	1 cut(s)	366
MlyI	GAGTC	2 cut(s)	20, 107
MnlI	CCTC	2 cut(s)	141, 343
MseI	TTAA	1 cut(s)	234
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	3 cut(s)	206, 347, 559
MvaI	CCWGG	3 cut(s)	206, 347, 559
MwoI	GCNNNNNNNGC	2 cut(s)	194, 215
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	134, 491
PaeR7I	CTCGAG	1 cut(s)	15
PagI	TCATGA	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	38, 311, 371
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	2 cut(s)	19, 106
PpsI	GAGTC	2 cut(s)	19, 106
Psp6I	CCWGG	3 cut(s)	204, 345, 557
PspGI	CCWGG	3 cut(s)	204, 345, 557
PstI	CTGCAG	2 cut(s)	220, 331
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	2 cut(s)	319, 523
RsaNI	GTAC	2 cut(s)	318, 522
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	135
SchI	GAGTC	2 cut(s)	20, 107
ScrFI	CCNGG	3 cut(s)	206, 347, 559
SduI	GDGCHC	2 cut(s)	414, 500
SetI	ASST	5 cut(s)	49, 334, 348, 538, 563
SfaNI	GCATC	2 cut(s)	184, 202
SfcI	CTRYAG	2 cut(s)	216, 327
Sfr274I	CTCGAG	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	204, 345, 557
TaaI	ACNGT	1 cut(s)	526
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	366
TatI	WGTACW	2 cut(s)	317, 521
TfiI	GAWTC	3 cut(s)	38, 311, 371
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	53, 68, 410
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.