Rh2BG670600

ATPase family AAA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002016
Physical Location & Seq
Reverse (-)
88256794 .. 88257066
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG670600.1

Sequence Viewer

Length: 273 bp
ATGGCCACTGGGCAGATCTCACTTTCCTCACCAAACAGTAATCCCAAAACCAGAGGCCTCTTATTCTTCCTCCCTCTATTGCCGCAACATTTCCAGGCGTCGGAACTTCACCGAGATTTCGGAGAAGGCTTCAGAATGATGGCTAGTGTCCAGGCTGCTGTTTATGGGAGTGAGAATTGTGTGCTTGACCCAACCCTATTTCTTGAAGTTGTAGACTACAAGGTAGCTGAGCATGAACATAGAAGAAAATTGGCAGTTGGAGAGAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF3523

Protein Analysis

90

Amino Acids

10.07

Weight (kDa)

6.4

Isoelectric Point (pI)

20.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AciI CCGC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 206
AjnI CCWGG 2 cut(s) 93, 150
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AoxI GGCC 2 cut(s) 3, 55
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 21, 101
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 95, 152
BfaI CTAG 1 cut(s) 144
BglII AGATCT 1 cut(s) 15
BisI GCNGC 2 cut(s) 83, 156
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 2 cut(s) 84, 157
Bme1390I CCNGG 2 cut(s) 95, 152
BmrFI CCNGG 2 cut(s) 95, 152
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 2 cut(s) 95, 152
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 5, 57
BslI CCNNNNNNNGG 1 cut(s) 100
BsnI GGCC 2 cut(s) 5, 57
Bsp143I GATC 1 cut(s) 15
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 5, 57
BspCNI CTCAG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 13
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 95, 152
Bst4CI ACNGT 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 228
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstNI CCWGG 2 cut(s) 95, 152
BstSCI CCNGG 2 cut(s) 93, 150
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 2 cut(s) 5, 57
BtsIMutI CAGTG 1 cut(s) 6
CseI GACGC 1 cut(s) 87
CviAII CATG 1 cut(s) 233
CviJI RGCY 6 cut(s) 5, 57, 129, 143, 155, 227
CviKI_1 RGCY 6 cut(s) 5, 57, 129, 143, 155, 227
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 93, 150
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 165, 234, 240
FatI CATG 1 cut(s) 232
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 83, 156
Fsp4HI GCNGC 2 cut(s) 83, 156
FspBI CTAG 1 cut(s) 144
GluI GCNGC 2 cut(s) 83, 156
HaeIII GGCC 2 cut(s) 5, 57
HgaI GACGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 1 cut(s) 236
HphI GGTGA 2 cut(s) 21, 101
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 103, 122, 134
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 5 cut(s) 64, 80, 107, 137, 164
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 144
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 58, 255
MflI RGATCY 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 175, 248, 267
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 81, 238
MnlI CCTC 5 cut(s) 37, 47, 68, 80, 84
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 271
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 95, 152
MvaI CCWGG 2 cut(s) 95, 152
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 236
PceI AGGCCT 1 cut(s) 57
PkrI GCNGC 2 cut(s) 84, 157
Psp6I CCWGG 2 cut(s) 93, 150
PspGI CCWGG 2 cut(s) 93, 150
PsuI RGATCY 1 cut(s) 15
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 2 cut(s) 83, 156
Sau3AI GATC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 95, 152
SetI ASST 2 cut(s) 225, 229
Sse9I AATT 3 cut(s) 175, 248, 267
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 144
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 93, 150
TaaI ACNGT 1 cut(s) 38
TasI AATT 3 cut(s) 175, 248, 267
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.