Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002016

Physical Location & Seq

Genomic Coordinates Reverse (-)

73897122 .. 73898051

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0622500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGTTTTTCGAAGAAGTCACAAGTGCTGGACGGAGGGATAGAGTCAGAGGGAAAGAAGTGGGTGATTGCCGGAATCTCGGTCCGAGCCTCGCTGAAGCCGATAAAGACGAAGACGAGGAGAACCAAGGAGAGCGAGGAGGGCAGCGAAGAAGAAGAGGCGGGTTCAACAACCCCAACGGCGAAAGAAGCCAGAATACCGGAGAAGTTTTCGTGCCCGGCGGCGCCGAGAAAGCGGCGACCGGCGTCGGTGTGCAACTTCAGTGGGGTGAGGGAGTACTTCATCCCACCGGATTTGGAGACGGTTTTCAAACTCCATGTGGAGAAAGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthami_syn_2 Pkinase Ribonuc_L-PSP

Protein Analysis

111

Amino Acids

12.25

Weight (kDa)

9.36

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04480
fragaria_vesca	FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810
malus_domestica	MD04G1230700.v1.1
prunus_persica	Prupe.6G350500_v2.0.a1
pyrus_communis	pycom04g20440
rosa_chinensis	RchiOBHm_Chr2g0149091 RchiOBHm_Chr3g0449521 RchiOBHm_Chr6g0277751
rosa_laevigata	RLG00000025818 RLG00000036278
rosa_multiflora	Rmu_co8274617.1_g000001 Rmu_sc0000430.1_g000014
rosa_roxburghii	Rroxscaffold_6G00427480 Rroxscaffold_7G00175750
rosa_rugosa	Rorug02G0622400 Rorug02G0622500 Rorug02G0622600
rosa_samantha	Rh2AG410700 Rh2AG659700 Rh2BG670500 Rh2BG670600 Rh2CG396800 Rh3AG020100 Rh3BG020200 Rh3CG018900 Rh3DG020100
rosa_wichuraiana	Rw2G033330 Rw2G033560 Rw3G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	3 cut(s)	161, 221, 235
AcuI	CTGAAG	2 cut(s)	116, 244
AcyI	GRCGYC	2 cut(s)	224, 245
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	168, 310
Alw26I	GTCTC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	76, 280
AsuII	TTCGAA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	156
BceAI	ACGGC	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	3 cut(s)	145, 222, 236
BlsI	GCNGC	3 cut(s)	146, 223, 237
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	218
BoxI	GACNNNNGTC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	218
BsaHI	GRCGYC	2 cut(s)	224, 245
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	2 cut(s)	199, 289
Bse118I	RCCGGY	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	282
BseRI	GAGGAG	2 cut(s)	133, 152
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	242
BsiSI	CCGG	5 cut(s)	72, 200, 218, 242, 290
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	218
BspACI	CCGC	3 cut(s)	161, 221, 235
BspLI	GGNNCC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	126
BssNI	GRCGYC	2 cut(s)	224, 245
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	224, 245
BstBI	TTCGAA	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	293
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 188, 232
BstPAI	GACNNNNGTC	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	268
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	82
CpoI	CGGWCCG	1 cut(s)	82
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	277
CspCI	CAANNNNNGTGG	4 cut(s)	244, 276, 279, 311
CspI	CGGWCCG	1 cut(s)	82
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	3 cut(s)	89, 100, 191
CviKI_1	RGCY	3 cut(s)	89, 100, 191
CviQI	GTAC	1 cut(s)	277
DinI	GGCGCC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	116, 244
EcoT14I	CCWWGG	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	1 cut(s)	320
FaiI	YATR	1 cut(s)	318
FatI	CATG	1 cut(s)	316
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	145, 222, 236
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	145, 222, 236
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	3 cut(s)	145, 222, 236
HaeII	RGCGCY	1 cut(s)	227
HapII	CCGG	5 cut(s)	72, 200, 218, 242, 290
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	2 cut(s)	224, 245
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	2 cut(s)	44, 75
HpaII	CCGG	5 cut(s)	72, 200, 218, 242, 290
HphI	GGTGA	2 cut(s)	76, 280
Hpy188I	TCNGA	2 cut(s)	49, 86
Hpy99I	CGWCG	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 188, 232
Hsp92I	GRCGYC	2 cut(s)	224, 245
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	224
KasI	GGCGCC	1 cut(s)	223
LpnPI	CCDG	7 cut(s)	14, 85, 205, 213, 231, 255, 303
Lsp1109I	GCAGC	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	18
MboII	GAAGA	5 cut(s)	25, 124, 161, 164, 167
MhlI	GDGCHC	1 cut(s)	218
Mly113I	GGCGCC	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	8 cut(s)	29, 43, 100, 111, 130, 133, 151, 264
MspI	CCGG	5 cut(s)	72, 200, 218, 242, 290
MspR9I	CCNGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	141, 188, 232
NarI	GGCGCC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	218
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	146, 223, 237
PleI	GAGTC	1 cut(s)	52
PluTI	GGCGCC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	52
PshAI	GACNNNNGTC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
Rsr2I	CGGWCCG	1 cut(s)	82
RsrII	CGGWCCG	1 cut(s)	82
SatI	GCNGC	3 cut(s)	145, 222, 236
Sau96I	GGNCC	1 cut(s)	82
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	218
SfoI	GGCGCC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	11
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	3 cut(s)	161, 221, 235
SspDI	GGCGCC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	11
TaqII	GACCGA	1 cut(s)	70
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	2 cut(s)	224, 238
TfiI	GAWTC	1 cut(s)	75
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.