Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002016

Physical Location & Seq

Genomic Coordinates Reverse (-)

1318635 .. 1324385

Gene Structure 5751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGAAGGTGGTGGCTTTAGTAAGCGGCGGCAAGGACAGCTGCTATGCCATGATGAAGTGCCTCCAATACGGCCACCAGATTGTTGCTGTGGCAAATTTGATGCCAGCTGATGATTCGGTGGACGAGCTTGATAGTTACATGTATCAAACTGTTGGGCACCAGATAGTTATCAGCTATGCAGAATGCATGGGAGTGCCATTGTTCAGAAGGCGAATACAAGGATCCACAAGGCATCAGAAGCTTAGCTATAGAATGACTCCTGGCGATGAAGTCGAAGATATGTTTATTTTGTTAAATGAAGTGAAACGACAGATTCCTTCTGTCACTGCTGTATCTTCTGGTGCTATTGCATCAGACTACCAAAGGCTGCGGGTGGAAAGTGTCTGTTCAAGGTTAGGTCTTGTTTCTCTAGCATACTTGTGGAAACAAGATCAGTCTTTGCTCCTTCAAGAAATGATAACTAGTGGGATTGTGGCGATTACAGTGAAGGTTGCTGCCATGGGGTTGGACCCCTCAAAGCACTTGGGCAAAGAAATGTCAGTGTTGCAGCCGTATCTGCATAAGTTGAAAGAGTTATATGGTATTAATGTATGTGGTGAAGGAGGGGAATATGAAACGTTAACACTGGATTGCCCTCTCTTTGTTAATGCTCGAATCATGCTTGATGAGTCTCGAGTAGTAATGCACTCTTCTGATTCCATAGCTCCAGTTGGGGTGCTTCATCCGGTGGCTTTTCATTTGCAAAGTAAGGCAGAGTCCCATTCTTTGGAGAGCAATGACAATGCTCATGAGATCTGTGGAGAGAGGGTGGGTTCTCTATTTGAAGTGCAAGGAGACACACAAGCATGTGATGCCATTTGCCAGGCTGATGCTGCAGTGGATGTCTTAGTTAAACTTCCTGAACTTAAACTTCACATTTCAAGAACACAAAAGGACGATACATTTTCTATTTGTTGCTGGTTGCAAGATTCTTGTACAACTTCTGCAGGTTTGCAAGAAGACCTGGAGGCTGTTCTGAAGAAAATTGAATCACTACTCGTGGAATATGGTTTTGGTTGGGAATATGTGCTCTACATTCATCTTTATATTGCTGATATGGGTGGGTTTTCTACAGCAAATGATACATATGTGAGATATATAACCCAGGAGAAGTGCCCGTTTGGTGTTCCATCTCGCAGTACAGTTGAACTACCTTTGTTGCAAGTGGGTTTAGGTAATGCATACATGGAAGTTCTAGTTGCTAATGACCACACCAAAAGAGTTCTGCATGTACAAAGTATATCTTGTTGGGCACCCAGTTGTATTGGACCTTATAGCCAGGCAACTTTGCATAAGGAGATACTTCACATGGCTGGACAATTAGGGCTCAACCCTCCCACAATGACTTTATGTGATGGAGGTGTCATGGATGAGCTAGCAAAAGCACTGGACAATAGTGAAGCAGTGGCAAAAAGCTTTAACTGCTCAATATCTAATTCCACTATTATGTTTGTCAACTACTGTTCAACTAAAATTCCGCTGTCGGATAGATTAAATCTTCATGACAAGCATAAAGCTTTCCTTAAACAAACGAGGGACTTCAATTCGGATAAAGGAAGCAATTCTGAAGCATTGGAACCCATTTTCTTTTATGTCCTTCTCCCGGATCTGCCAAAAGGGGCGCTTGTAGAAGTTAAACCTGTTCTATTTGTTGCAGAAGATATTGAAGCAACAATTAGGGATGTGAAAGACCAATCTCACTCAAGATCCACTGGTTACTGGGGTTTTCAACATGCAAATTGGCATGAGTCCTGCATTCAAAAGTGCATTGTTCCTGAAAAGTTATGTGCAGTTGTTTTGTCTGTGAGTAGCGAACTTGCTGCCATGATCTGTGACAAGGACAAAGGGGATCATCAAAATTCTGTCATAGGAAGGCAGATGGATAGAGTATTAAGATTTTGCTTATATCTTCTTGATAAGATTATCATGGAGAACGATTTTGGTTGGGAAGACACTATGTATTTGAGGTTCTACTTTCCAACTAGTCTTCAAGTGACTCTGGATGCACTGTCTTTCATGTTGACCAATGCATTTAGTGAATTTGCCGAGATGAATCGGAATATCAAGATTGGCACGGACCCCATCTTCAACCTAGTTCCTGTCTTAGGTGCTGGGAAGTCTTCAGCATCAATGAATGATATCATCACCTGTGAACTATTGGCTCGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthami_syn_2 Pkinase Ribonuc_L-PSP

Protein Analysis

736

Amino Acids

81.76

Weight (kDa)

5.34

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Diphthami_syn_2	PF01902	1 - 230	5.9e-38	Diphthamide synthase
Ribonuc_L-PSP	PF01042	328 - 401	1.6e-07	Endoribonuclease L-PSP
Ribonuc_L-PSP	PF01042	431 - 496	2.9e-07	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04480
fragaria_vesca	FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810 FvH4_6g01810
malus_domestica	MD04G1230700.v1.1
prunus_persica	Prupe.6G350500_v2.0.a1
pyrus_communis	pycom04g20440
rosa_chinensis	RchiOBHm_Chr2g0149091 RchiOBHm_Chr3g0449521 RchiOBHm_Chr6g0277751
rosa_laevigata	RLG00000025818 RLG00000036278
rosa_multiflora	Rmu_co8274617.1_g000001 Rmu_sc0000430.1_g000014
rosa_roxburghii	Rroxscaffold_6G00427480 Rroxscaffold_7G00175750
rosa_rugosa	Rorug02G0622400 Rorug02G0622500 Rorug02G0622600
rosa_samantha	Rh2AG410700 Rh2AG659700 Rh2BG670500 Rh2BG670600 Rh2CG396800 Rh3AG020100 Rh3BG020200 Rh3CG018900 Rh3DG020100
rosa_wichuraiana	Rw2G033330 Rw2G033560 Rw3G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	977
AccB1I	GGYRCC	2 cut(s)	156, 1291
AccB7I	CCANNNNNTGG	1 cut(s)	766
AciI	CCGC	4 cut(s)	24, 27, 370, 1517
AclI	AACGTT	1 cut(s)	617
AclWI	GGATC	5 cut(s)	216, 229, 1653, 1740, 1896
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	4 cut(s)	94, 1512, 1897, 2078
AcuI	CTGAAG	3 cut(s)	1037, 1626, 2145
AfaI	GTAC	3 cut(s)	976, 1180, 1272
AfiI	CCNNNNNNNGG	3 cut(s)	766, 1642, 2144
AflIII	ACRYGT	1 cut(s)	138
AhlI	ACTAGT	2 cut(s)	461, 2021
AjnI	CCWGG	5 cut(s)	259, 861, 1002, 1143, 1317
AjuI	GAANNNNNNNTTGG	2 cut(s)	1035, 1067
Alw21I	GWGCWC	1 cut(s)	1071
Alw26I	GTCTC	2 cut(s)	675, 828
AlwI	GGATC	5 cut(s)	216, 229, 1653, 1740, 1896
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	6 cut(s)	39, 367, 494, 547, 872, 1859
ApoI	RAATTY	4 cut(s)	94, 1512, 1897, 2078
AseI	ATTAAT	1 cut(s)	585
Asp700I	GAANNNNTTC	1 cut(s)	1600
AspLEI	GCGC	1 cut(s)	1663
AspS9I	GGNCC	3 cut(s)	508, 1307, 2116
AsuC2I	CCSGG	1 cut(s)	1643
AsuHPI	GGTGA	2 cut(s)	608, 2176
AsuNHI	GCTAGC	1 cut(s)	1414
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	3 cut(s)	508, 1307, 2116
BaeGI	GKGCMC	3 cut(s)	159, 1157, 1294
BaeI	ACNNNNGTAYC	4 cut(s)	315, 348, 1113, 1146
BamHI	GGATCC	1 cut(s)	221
BanI	GGYRCC	2 cut(s)	156, 1291
BanII	GRGCYC	1 cut(s)	1368
BauI	CACGAG	1 cut(s)	1037
BbsI	GAAGAC	4 cut(s)	1005, 1995, 2018, 2151
Bbv12I	GWGCWC	1 cut(s)	1071
BbvI	GCAGC	6 cut(s)	26, 354, 481, 559, 859, 1846
BccI	CCATC	4 cut(s)	1177, 1388, 1912, 2129
BceAI	ACGGC	2 cut(s)	85, 535
BcgI	CGANNNNNNTGC	2 cut(s)	1841, 1875
BciT130I	CCWGG	5 cut(s)	261, 863, 1004, 1145, 1319
BcnI	CCSGG	1 cut(s)	1643
BcoDI	GTCTC	2 cut(s)	675, 828
BcuI	ACTAGT	2 cut(s)	461, 2021
BfaI	CTAG	6 cut(s)	410, 462, 1235, 1415, 2022, 2132
BfmI	CTRYAG	4 cut(s)	247, 873, 984, 1110
BfoI	RGCGCY	1 cut(s)	1664
BfuAI	ACCTGC	1 cut(s)	977
BglII	AGATCT	1 cut(s)	792
BisI	GCNGC	8 cut(s)	25, 28, 40, 368, 495, 548, 873, 1860
BlpI	GCTNAGC	1 cut(s)	242
BlsI	GCNGC	8 cut(s)	26, 29, 41, 369, 496, 549, 874, 1861
Bme1390I	CCNGG	6 cut(s)	261, 863, 1004, 1145, 1319, 1643
Bme18I	GGWCC	3 cut(s)	508, 1307, 2116
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	3 cut(s)	508, 1307, 2116
BmiI	GGNNCC	6 cut(s)	158, 223, 510, 1293, 1617, 2118
BmrFI	CCNGG	6 cut(s)	261, 863, 1004, 1145, 1319, 1643
BmrI	ACTGGG	2 cut(s)	1290, 1768
BmsI	GCATC	7 cut(s)	90, 241, 359, 841, 859, 2032, 2174
BmtI	GCTAGC	1 cut(s)	1418
BmuI	ACTGGG	2 cut(s)	1290, 1768
BpiI	GAAGAC	4 cut(s)	1005, 1995, 2018, 2151
BpmI	CTGGAG	2 cut(s)	690, 1025
Bpu1102I	GCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	1726
BpuMI	CCSGG	1 cut(s)	1643
BsaBI	GATNNNNATC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	498, 1143
BsaWI	WCCGGW	1 cut(s)	724
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	766, 1642, 2144
Bse1I	ACTGG	6 cut(s)	630, 707, 1296, 1431, 1756, 1763
Bse3DI	GCAATG	1 cut(s)	781
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	5 cut(s)	261, 863, 1004, 1145, 1319
BseDI	CCNNGG	2 cut(s)	498, 1143
BseGI	GGATG	5 cut(s)	721, 886, 1414, 1726, 2047
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	3 cut(s)	766, 1642, 2144
BseMI	GCAATG	1 cut(s)	781
BseNI	ACTGG	6 cut(s)	630, 707, 1296, 1431, 1756, 1763
BseSI	GKGCMC	3 cut(s)	159, 1157, 1294
BseXI	GCAGC	6 cut(s)	26, 354, 481, 559, 859, 1846
BseYI	CCCAGC	1 cut(s)	2150
BsgI	GTGCAG	1 cut(s)	1848
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	2 cut(s)	156, 1291
BsiHKAI	GWGCWC	1 cut(s)	1071
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	725, 1643
BslFI	GGGAC	2 cut(s)	742, 1589
BslI	CCNNNNNNNGG	3 cut(s)	766, 1642, 2144
BsmAI	GTCTC	2 cut(s)	675, 828
BsmFI	GGGAC	2 cut(s)	742, 1589
BsmI	GAATGC	2 cut(s)	188, 1794
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	672
Bsp1286I	GDGCHC	5 cut(s)	159, 1071, 1157, 1294, 1368
Bsp1407I	TGTACA	2 cut(s)	974, 1270
Bsp143I	GATC	7 cut(s)	221, 430, 792, 1645, 1745, 1866, 1888
Bsp1720I	GCTNAGC	1 cut(s)	242
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	4 cut(s)	24, 27, 370, 1517
BspANI	GGCC	1 cut(s)	72
BspHI	TCATGA	2 cut(s)	787, 1540
BspLI	GGNNCC	6 cut(s)	158, 223, 510, 1293, 1617, 2118
BspMAI	CTGCAG	2 cut(s)	877, 988
BspMI	ACCTGC	1 cut(s)	977
BspOI	GCTAGC	1 cut(s)	1418
BspPI	GGATC	5 cut(s)	216, 229, 1653, 1740, 1896
BspT107I	GGYRCC	2 cut(s)	156, 1291
BsrDI	GCAATG	1 cut(s)	781
BsrGI	TGTACA	2 cut(s)	974, 1270
BsrI	ACTGG	6 cut(s)	630, 707, 1296, 1431, 1756, 1763
BssECI	CCNNGG	2 cut(s)	498, 1143
BssMI	GATC	7 cut(s)	221, 430, 792, 1645, 1745, 1866, 1888
BssSI	CACGAG	1 cut(s)	1037
BssT1I	CCWWGG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	1037
Bst2UI	CCWGG	5 cut(s)	261, 863, 1004, 1145, 1319
Bst4CI	ACNGT	5 cut(s)	151, 484, 1183, 1502, 2049
Bst6I	CTCTTC	1 cut(s)	694
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstAUI	TGTACA	2 cut(s)	974, 1270
BstC8I	GCNNGC	3 cut(s)	105, 1416, 2203
BstDEI	CTNAG	3 cut(s)	242, 886, 2143
BstDSI	CCRYGG	1 cut(s)	498
BstENI	CCTNNNNNAGG	1 cut(s)	2142
BstF5I	GGATG	5 cut(s)	721, 886, 1414, 1726, 2047
BstH2I	RGCGCY	1 cut(s)	1664
BstHHI	GCGC	1 cut(s)	1663
BstKTI	GATC	7 cut(s)	224, 433, 795, 1648, 1748, 1869, 1891
BstMAI	GTCTC	2 cut(s)	675, 828
BstMBI	GATC	7 cut(s)	221, 430, 792, 1645, 1745, 1866, 1888
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 238, 556, 851, 872, 1461
BstNI	CCWGG	5 cut(s)	261, 863, 1004, 1145, 1319
BstNSI	RCATGY	4 cut(s)	142, 849, 1271, 1775
BstSCI	CCNGG	6 cut(s)	259, 861, 1002, 1143, 1317, 1641
BstSFI	CTRYAG	4 cut(s)	247, 873, 984, 1110
BstSLI	GKGCMC	3 cut(s)	159, 1157, 1294
BstV1I	GCAGC	6 cut(s)	26, 354, 481, 559, 859, 1846
BstV2I	GAAGAC	4 cut(s)	1005, 1995, 2018, 2151
BstX2I	RGATCY	4 cut(s)	221, 792, 1645, 1745
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	4 cut(s)	221, 792, 1645, 1745
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	498
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	5 cut(s)	721, 886, 1414, 1726, 2047
BtsI	GCAGTG	3 cut(s)	324, 882, 1449
BtsIMutI	CAGTG	9 cut(s)	324, 489, 546, 623, 882, 1424, 1449, 1749, 2045
BveI	ACCTGC	1 cut(s)	977
Cac8I	GCNNGC	3 cut(s)	105, 1416, 2203
CciI	TCATGA	2 cut(s)	787, 1540
CfoI	GCGC	1 cut(s)	1663
Cfr13I	GGNCC	3 cut(s)	508, 1307, 2116
Csp6I	GTAC	3 cut(s)	975, 1179, 1271
CviQI	GTAC	3 cut(s)	975, 1179, 1271
DdeI	CTNAG	3 cut(s)	242, 886, 2143
DpnI	GATC	7 cut(s)	223, 432, 794, 1647, 1747, 1868, 1890
DpnII	GATC	7 cut(s)	221, 430, 792, 1645, 1745, 1866, 1888
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	1368
Eco32I	GATATC	1 cut(s)	2179
Eco47I	GGWCC	3 cut(s)	508, 1307, 2116
Eco57I	CTGAAG	3 cut(s)	1037, 1626, 2145
Eco88I	CYCGRG	1 cut(s)	672
EcoNI	CCTNNNNNAGG	1 cut(s)	2142
EcoRII	CCWGG	5 cut(s)	259, 861, 1002, 1143, 1317
EcoRV	GATATC	1 cut(s)	2179
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	3 cut(s)	188, 1222, 2071
EcoT38I	GRGCYC	1 cut(s)	1368
ErhI	CCWWGG	1 cut(s)	498
FalI	AAGNNNNNCTT	6 cut(s)	1267, 1299, 1545, 1577, 1647, 1679
FaqI	GGGAC	2 cut(s)	742, 1589
FauI	CCCGC	1 cut(s)	363
FauNDI	CATATG	1 cut(s)	1126
Fnu4HI	GCNGC	8 cut(s)	25, 28, 40, 368, 495, 548, 873, 1860
FokI	GGATG	5 cut(s)	708, 893, 1421, 1733, 2054
FriOI	GRGCYC	1 cut(s)	1368
Fsp4HI	GCNGC	8 cut(s)	25, 28, 40, 368, 495, 548, 873, 1860
FspBI	CTAG	6 cut(s)	410, 462, 1235, 1415, 2022, 2132
GlaI	GCGC	1 cut(s)	1662
GluI	GCNGC	8 cut(s)	25, 28, 40, 368, 495, 548, 873, 1860
GsaI	CCCAGC	1 cut(s)	2154
GsuI	CTGGAG	2 cut(s)	690, 1025
HaeII	RGCGCY	1 cut(s)	1664
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	725, 1643
HhaI	GCGC	1 cut(s)	1663
Hin6I	GCGC	1 cut(s)	1661
HinP1I	GCGC	1 cut(s)	1661
HincII	GTYRAC	3 cut(s)	621, 1495, 2061
HindII	GTYRAC	3 cut(s)	621, 1495, 2061
HindIII	AAGCTT	3 cut(s)	239, 1453, 1554
HpaI	GTTAAC	1 cut(s)	621
HpaII	CCGG	2 cut(s)	725, 1643
HphI	GGTGA	2 cut(s)	608, 2176
Hpy166II	GTNNAC	5 cut(s)	121, 621, 1495, 2061, 2192
Hpy188I	TCNGA	9 cut(s)	206, 237, 355, 694, 1017, 1525, 1588, 1606, 2097
Hpy8I	GTNNAC	5 cut(s)	121, 621, 1495, 2061, 2192
HpyAV	CCTTC	7 cut(s)	201, 327, 455, 481, 593, 1646, 1905
HpyCH4III	ACNGT	5 cut(s)	151, 484, 1183, 1502, 2049
HpyCH4IV	ACGT	1 cut(s)	617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 238, 556, 851, 872, 1461
HpyF3I	CTNAG	3 cut(s)	242, 886, 2143
HpySE526I	ACGT	1 cut(s)	617
HspAI	GCGC	1 cut(s)	1661
KspAI	GTTAAC	1 cut(s)	621
Kzo9I	GATC	7 cut(s)	221, 430, 792, 1645, 1745, 1866, 1888
LmnI	GCTCC	2 cut(s)	447, 709
Lsp1109I	GCAGC	6 cut(s)	26, 354, 481, 559, 859, 1846
LweI	GCATC	7 cut(s)	90, 241, 359, 841, 859, 2032, 2174
MaeI	CTAG	6 cut(s)	410, 462, 1235, 1415, 2022, 2132
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	5 cut(s)	134, 322, 1754, 1871, 2032
MalI	GATC	7 cut(s)	223, 432, 794, 1647, 1747, 1868, 1890
MboI	GATC	7 cut(s)	221, 430, 792, 1645, 1745, 1866, 1888
MflI	RGATCY	4 cut(s)	221, 792, 1645, 1745
MhlI	GDGCHC	5 cut(s)	159, 1071, 1157, 1294, 1368
MlyI	GAGTC	5 cut(s)	250, 677, 764, 1796, 2029
MmeI	TCCRAC	3 cut(s)	486, 1503, 2042
Mph1103I	ATGCAT	3 cut(s)	188, 1222, 2071
MroXI	GAANNNNTTC	1 cut(s)	1600
MslI	CAYNNNNRTG	4 cut(s)	191, 418, 844, 1484
MspA1I	CMGCKG	3 cut(s)	39, 107, 1519
MspI	CCGG	2 cut(s)	725, 1643
MspR9I	CCNGG	6 cut(s)	261, 863, 1004, 1145, 1319, 1643
Mva1269I	GAATGC	2 cut(s)	188, 1794
MvaI	CCWGG	5 cut(s)	261, 863, 1004, 1145, 1319
MwoI	GCNNNNNNNGC	6 cut(s)	36, 238, 556, 851, 872, 1461
NciI	CCSGG	1 cut(s)	1643
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	1 cut(s)	1126
NdeII	GATC	7 cut(s)	221, 430, 792, 1645, 1745, 1866, 1888
NheI	GCTAGC	1 cut(s)	1414
NlaIV	GGNNCC	6 cut(s)	158, 223, 510, 1293, 1617, 2118
NmeAIII	GCCGAG	1 cut(s)	2110
NmuCI	GTSAC	3 cut(s)	322, 1871, 2032
NsiI	ATGCAT	3 cut(s)	188, 1222, 2071
NspI	RCATGY	4 cut(s)	142, 849, 1271, 1775
PaeR7I	CTCGAG	1 cut(s)	672
PagI	TCATGA	2 cut(s)	787, 1540
PciI	ACATGT	1 cut(s)	138
PctI	GAATGC	2 cut(s)	188, 1794
PdmI	GAANNNNTTC	1 cut(s)	1600
PfeI	GAWTC	7 cut(s)	113, 313, 654, 695, 968, 1028, 2092
PflMI	CCANNNNNTGG	1 cut(s)	766
PfoI	TCCNGGA	1 cut(s)	1641
PkrI	GCNGC	8 cut(s)	26, 29, 41, 369, 496, 549, 874, 1861
PleI	GAGTC	5 cut(s)	250, 676, 763, 1795, 2029
PpsI	GAGTC	5 cut(s)	250, 676, 763, 1795, 2029
PscI	ACATGT	1 cut(s)	138
PshBI	ATTAAT	1 cut(s)	585
Psp1406I	AACGTT	1 cut(s)	617
Psp6I	CCWGG	5 cut(s)	259, 861, 1002, 1143, 1317
PspFI	CCCAGC	1 cut(s)	2150
PspGI	CCWGG	5 cut(s)	259, 861, 1002, 1143, 1317
PspN4I	GGNNCC	6 cut(s)	158, 223, 510, 1293, 1617, 2118
PspPI	GGNCC	3 cut(s)	508, 1307, 2116
PsrI	GAACNNNNNNTAC	2 cut(s)	1991, 2023
PstI	CTGCAG	2 cut(s)	877, 988
PsuI	RGATCY	4 cut(s)	221, 792, 1645, 1745
PvuII	CAGCTG	2 cut(s)	39, 107
RsaI	GTAC	3 cut(s)	976, 1180, 1272
RsaNI	GTAC	3 cut(s)	975, 1179, 1271
RseI	CAYNNNNRTG	4 cut(s)	191, 418, 844, 1484
SatI	GCNGC	8 cut(s)	25, 28, 40, 368, 495, 548, 873, 1860
Sau3AI	GATC	7 cut(s)	221, 430, 792, 1645, 1745, 1866, 1888
Sau96I	GGNCC	3 cut(s)	508, 1307, 2116
SchI	GAGTC	5 cut(s)	250, 677, 764, 1796, 2029
ScrFI	CCNGG	6 cut(s)	261, 863, 1004, 1145, 1319, 1643
SduI	GDGCHC	5 cut(s)	159, 1071, 1157, 1294, 1368
SfaNI	GCATC	7 cut(s)	90, 241, 359, 841, 859, 2032, 2174
SfcI	CTRYAG	4 cut(s)	247, 873, 984, 1110
Sfr274I	CTCGAG	1 cut(s)	672
SinI	GGWCC	3 cut(s)	508, 1307, 2116
SlaI	CTCGAG	1 cut(s)	672
SmiMI	CAYNNNNRTG	4 cut(s)	191, 418, 844, 1484
SmlI	CTYRAG	2 cut(s)	672, 1741
SmoI	CTYRAG	2 cut(s)	672, 1741
SpeI	ACTAGT	2 cut(s)	461, 2021
SsiI	CCGC	4 cut(s)	24, 27, 370, 1517
SspMI	CTAG	6 cut(s)	410, 462, 1235, 1415, 2022, 2132
StyD4I	CCNGG	6 cut(s)	259, 861, 1002, 1143, 1317, 1641
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	5 cut(s)	151, 484, 1183, 1502, 2049
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	3 cut(s)	273, 652, 673
TatI	WGTACW	3 cut(s)	974, 1178, 1270
TauI	GCSGC	2 cut(s)	27, 30
TfiI	GAWTC	7 cut(s)	113, 313, 654, 695, 968, 1028, 2092
TscAI	CASTG	9 cut(s)	331, 489, 546, 630, 882, 1431, 1449, 1756, 2052
TseFI	GTSAC	3 cut(s)	322, 1871, 2032
TseI	GCWGC	6 cut(s)	39, 367, 494, 547, 872, 1859
Tsp45I	GTSAC	3 cut(s)	322, 1871, 2032
TspGWI	ACGGA	1 cut(s)	2129
TspRI	CASTG	9 cut(s)	331, 489, 546, 630, 882, 1431, 1449, 1756, 2052
Van91I	CCANNNNNTGG	1 cut(s)	766
VpaK11BI	GGWCC	3 cut(s)	508, 1307, 2116
VspI	ATTAAT	1 cut(s)	585
XagI	CCTNNNNNAGG	1 cut(s)	2142
XapI	RAATTY	4 cut(s)	94, 1512, 1897, 2078
XceI	RCATGY	4 cut(s)	142, 849, 1271, 1775
XhoI	CTCGAG	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	1600
XspI	CTAG	6 cut(s)	410, 462, 1235, 1415, 2022, 2132
Zsp2I	ATGCAT	3 cut(s)	188, 1222, 2071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.