Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377913.1

Orthogroup ID

OG0003333

Physical Location & Seq

Genomic Coordinates Forward (+)

594 .. 1149

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377913.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggcctcctcctttctctgttcctctgttcagaacagactacttcaatacagagcagtgccgaaggccttgctcttgctctgtttcactctttgttacatactgttgttctctctctctgtgatctcagtttccggccagtcgtttgcctgcggcgacggtgccagcagcttcccgttctgcgacaagtcgttggcggccgatgcgcgggtggcggacctggtgcagaggctgacattgcaggagaagattacatttctggtggacagtgcagggaatgtgagcaggcttggaatacccaactaccagtggtggtcggaggctttacacggagtgtcgtccatcggccgcccgggggccagatattcgactgacattccgggagctaccagcttccctcagcccattttgaccgccgcgtcgttcaacaactcactctacgaagccattggaaggcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

153

Amino Acids

16.51

Weight (kDa)

8.33

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09730 AT5G64570 AT5G64570 AT5G64570
fragaria_vesca	FvH4_5g30690 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710
malus_domestica	MD08G1221800.v1.1 MD15G1414100.v1.1
prunus_persica	Prupe.1G559400_v2.0.a1 Prupe.1G559400_v2.0.a1
pyrus_communis	pycom08g19240 pycom15g36840
rosa_chinensis	RchiOBHm_Chr7g0225551 RchiOBHm_Chr7g0225581
rosa_laevigata	RLG00000001804 RLG00000001806
rosa_multiflora	Rmu_co8377913.1_g000001 Rmu_sc0003876.1_g000021 Rmu_sc0006321.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233670 Rroxscaffold_3G00233690
rosa_rugosa	Rorug07G0231600 Rorug07G0231800
rosa_samantha	Rh7AG372300 Rh7AG372500 Rh7BG365400 Rh7BG365500 Rh7CG390600 Rh7CG390800 Rh7DG376200 Rh7DG376300
rosa_wichuraiana	Rw7G031750 Rw7G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	161
AccII	CGCG	2 cut(s)	208, 419
AciI	CCGC	7 cut(s)	153, 197, 208, 215, 349, 414, 417
AcoI	YGGCCR	3 cut(s)	136, 198, 346
AdeI	CACNNNGTG	1 cut(s)	334
AfiI	CCNNNNNNNGG	3 cut(s)	207, 355, 453
AgsI	TTSAA	2 cut(s)	47, 427
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	171, 386, 393
AluI	AGCT	3 cut(s)	171, 386, 393
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	6 cut(s)	3, 66, 136, 198, 346, 357
ApeKI	GCWGC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	217, 357
AsuC2I	CCSGG	3 cut(s)	353, 354, 381
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	3 cut(s)	353, 354, 381
BisI	GCNGC	5 cut(s)	154, 169, 198, 349, 417
BlsI	GCNGC	5 cut(s)	155, 170, 199, 350, 418
Bme1390I	CCNGG	4 cut(s)	221, 353, 354, 381
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	217, 357
BmiI	GGNNCC	2 cut(s)	163, 358
BmrFI	CCNGG	4 cut(s)	221, 353, 354, 381
BmsI	GCATC	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	3 cut(s)	353, 354, 381
BsaJI	CCNNGG	2 cut(s)	352, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 355, 453
Bse1I	ACTGG	2 cut(s)	139, 307
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	352, 353
BseLI	CCNNNNNNNGG	3 cut(s)	207, 355, 453
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	2 cut(s)	141, 413
BseNI	ACTGG	2 cut(s)	139, 307
BseX3I	CGGCCG	2 cut(s)	198, 346
BseXI	GCAGC	1 cut(s)	180
BsgI	GTGCAG	2 cut(s)	245, 291
Bsh1236I	CGCG	2 cut(s)	208, 419
Bsh1285I	CGRYCG	2 cut(s)	201, 349
BshFI	GGCC	6 cut(s)	5, 68, 138, 200, 348, 359
BshNI	GGYRCC	1 cut(s)	161
BsiEI	CGRYCG	2 cut(s)	201, 349
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	135, 353, 380
BslI	CCNNNNNNNGG	3 cut(s)	207, 355, 453
BsnI	GGCC	6 cut(s)	5, 68, 138, 200, 348, 359
BsoBI	CYCGRG	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	7 cut(s)	153, 197, 208, 215, 349, 414, 417
BspANI	GGCC	6 cut(s)	5, 68, 138, 200, 348, 359
BspCNI	CTCAG	2 cut(s)	140, 412
BspFNI	CGCG	2 cut(s)	208, 419
BspLI	GGNNCC	2 cut(s)	163, 358
BspT107I	GGYRCC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	139, 307
BssECI	CCNNGG	2 cut(s)	352, 353
BssMI	GATC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	105, 161, 269
BstC8I	GCNNGC	3 cut(s)	151, 166, 287
BstDEI	CTNAG	2 cut(s)	127, 399
BstFNI	CGCG	2 cut(s)	208, 419
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMCI	CGRYCG	2 cut(s)	201, 349
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 212, 238
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	4 cut(s)	219, 351, 352, 379
BstUI	CGCG	2 cut(s)	208, 419
BstV1I	GCAGC	1 cut(s)	180
BstZI	CGGCCG	2 cut(s)	198, 346
BsuRI	GGCC	6 cut(s)	5, 68, 138, 200, 348, 359
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	3 cut(s)	63, 274, 314
Cac8I	GCNNGC	3 cut(s)	151, 166, 287
CaiI	CAGNNNCTG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	217, 357
Cfr9I	CCCGGG	1 cut(s)	352
CseI	GACGC	1 cut(s)	408
CsiI	ACCWGGT	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	127, 399
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DraIII	CACNNNGTG	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	3 cut(s)	136, 198, 346
EagI	CGGCCG	2 cut(s)	198, 346
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	2 cut(s)	198, 346
Eco147I	AGGCCT	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	217
Eco52I	CGGCCG	2 cut(s)	198, 346
Eco88I	CYCGRG	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	219
FaiI	YATR	1 cut(s)	101
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	154, 169, 198, 349, 417
Fsp4HI	GCNGC	5 cut(s)	154, 169, 198, 349, 417
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	5 cut(s)	154, 169, 198, 349, 417
HaeIII	GGCC	6 cut(s)	5, 68, 138, 200, 348, 359
HapII	CCGG	3 cut(s)	135, 353, 380
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HpaII	CCGG	3 cut(s)	135, 353, 380
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	33, 319
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	2 cut(s)	161, 424
HpyAV	CCTTC	2 cut(s)	58, 447
HpyCH4III	ACNGT	3 cut(s)	105, 161, 269
HpyCH4V	TGCA	3 cut(s)	226, 241, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 212, 238
HpyF3I	CTNAG	2 cut(s)	127, 399
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	383
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	193
MabI	ACCWGGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	6 cut(s)	16, 19, 34, 222, 313, 408
MspI	CCGG	3 cut(s)	135, 353, 380
MspR9I	CCNGG	4 cut(s)	221, 353, 354, 381
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	208, 419
MwoI	GCNNNNNNNGC	3 cut(s)	203, 212, 238
NciI	CCSGG	3 cut(s)	353, 354, 381
NdeII	GATC	1 cut(s)	123
NlaIV	GGNNCC	2 cut(s)	163, 358
PceI	AGGCCT	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	5 cut(s)	155, 170, 199, 350, 418
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	163, 358
PspPI	GGNCC	2 cut(s)	217, 357
PstNI	CAGNNNCTG	1 cut(s)	232
SatI	GCNGC	5 cut(s)	154, 169, 198, 349, 417
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	2 cut(s)	217, 357
ScrFI	CCNGG	4 cut(s)	221, 353, 354, 381
SetI	ASST	4 cut(s)	173, 222, 388, 395
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	217
SmaI	CCCGGG	1 cut(s)	354
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	7 cut(s)	153, 197, 208, 215, 349, 414, 417
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	4 cut(s)	219, 351, 352, 379
TaaI	ACNGT	3 cut(s)	105, 161, 269
TaqI	TCGA	1 cut(s)	368
TauI	GCSGC	4 cut(s)	156, 200, 351, 419
TscAI	CASTG	3 cut(s)	63, 274, 314
TseI	GCWGC	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	345
TspMI	CCCGGG	1 cut(s)	352
TspRI	CASTG	3 cut(s)	63, 274, 314
VpaK11BI	GGWCC	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.