Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003876.1

Orthogroup ID

OG0003333

Physical Location & Seq

Genomic Coordinates Forward (+)

73454 .. 81233

Gene Structure 7780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003876.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2997 bp

ctgctgaagcccaagcccagcccaagtgaagcaggcgagctgccgagcctcaaactctctgccacgtcagcaccacgcaggcatccagtcagcagccacgtcagccacatgtgccacgtcagcaggccggtcaaccaccgccggcgacttttccggccaacttccggcgacttttcctgccactttccggtgacttttccggcagctacagtactttccgccgctacagtgctttccggcgacaacttttccgaccatcttttaaggaggccaggcgccatggctgctgaccttcaagttgcagagggagtaacattagccaacgcttcacttccggatgccaagggtttgtccaccatcattctccatacccgaatagtctgcaaaagaaggataaaggtaccaaaagacataagatcggccgtcgtggtggtggagaccaccaagcaacacaacgccactggtccggcaacatccacaagcatcgctggagtatcggttcggcagctattctcaggtgtagagttaggcgccatggctgctgacctccaagttgcagagggagtaacatcagccaacgcttcacttccggatgccaagggtttgtctaccatcattctccatactcgaacagtctgcaaaagaaggataaaggtaccaaaagacataagatcggctgtcgtggtggtggagaccaccaagcaacacaacgccactggtccggcaacatccacaagcatcggtggagtatcggttcgacagctattctcaggtgtagagttagtttccggccagtcatttgcctgcggtggtggttccagcagcttcccgttctgcgacaagtcgttggcggccgatgcgcgggtggcggacctcgtgaagaggctgacattgcaggagaagattacgtttctggtgaacagtgcaggcagtgtgagcaggcttggaatacccaagtacgagtggtggtcggaggctttacacggtgtgtcgtacgtcggccccggaaccaggttttcgaatgtcgtccccggagctaccagcttccctcagcccattttgaccgcagcgtcgttcaacaactctctctacgaagccatcggaagggtggtgtcaactgaggccagagcaatgtacaatgtgggattggcgggattgacattctggtccccaaacattaacattttccgagacccgagatggggaagaggccaagagactccgggagaagacccattgctcacgagtaactacggatcaggatacgttagaggtcttcaacaaaccgatagcggagacaaaaataggcttaaagttgcggcatgttgtaaacattatacagcctatgatttggacaattggaaaggaactgacagataccatttcaatgcagtggtaacaaaacaagacatggatgatacatttcagccaccattcaaaagttgtgttcttgatgggaatgttgctagtgtcatgtgttcttacaaccaggttaatggaataccaacctgcgcagacccaaaccttctctctggggttatccgaggcgaatggaagttgaatggatacatagtgactgattgtgattcaatagatgtgtactacaagaaccaacactacaccaagacaccagaagaggctgcagctaaggctatattagcaggtttggatctaaactgtggatcattcttaggacagtacacagaaggagcagtgaaaggaggacttgtgactgaggcagccattgacaaggccatcacaaacaattttggcacattgatgcgtctaggcttcttcgatggtgatccaagcaagcaaccatatggacatctcggtccaaaggatgtgtgcactccacagaaccaggagctggcacgtgaaacagcgagacaagggatagtgttgctcaagaacactccaggatcactgcctctgtctcccacagccatcaaatccttggcagttataggtcccaatggcaatgtcacaaagactatgattggaaattacgaaggcaccccttgcaaatatacaactcctttgcaaggcctaacagccgtagttcccacaacatttgtggccgggtgcgctgatgtggcttgtggcactgcccaggtagatgatgctaccaagttagcagccgcagcagatgcaactgtacttatagtgggtgaaaatcaatcaattgagactgaaagtcatgatagaattgacctccatcttccaggacagcaaactcttctaataactgaagtagcgaaggcttctaaaggacctgttatccttgtcataatgtctggaggagggttcgatattacctttgcgaaaaatgatgataaaattacaagcattctatgggttggttaccctggcgaagctggtggagctgccattgctgacgtgatttttggcttttataatccaagtggaagactacctatgacgtggtatcctcaagcatatgtagacaaggtccctatgacaaacatgaatatgagaccagatcctgcaagtggttacccgggcaggacttaccggttttacactggtgacacggtttatgaatttggatacggaataagctactccaccttcaatcaccgcctagttcgagcaccgaagcaagtttccattcccttagaggaggatcatgtatgccactcatcaagttgccaatcacttgatgttgtagaagaaaggtgtcaaaatctagctttcgatatccatttgggggtgaaaaacatgggcaaaatgagtggaagtcatacagtcttattgtattcgagtcctccatctgtgcacaattctcctaaaaagcacttgttgggatttgagaaggtgttccttagctctcagggagaagcattggtcaagttcaatgtggatgtttgcaagcacttgagtgtggttgatgagctaggaagtagaaaagttgctttgggagatcatgtactacatgtgggagacttgaaacagacattaagtgtgaggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

998

Amino Acids

107.08

Weight (kDa)

8.48

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09730 AT5G64570 AT5G64570 AT5G64570
fragaria_vesca	FvH4_5g30690 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710
malus_domestica	MD08G1221800.v1.1 MD15G1414100.v1.1
prunus_persica	Prupe.1G559400_v2.0.a1 Prupe.1G559400_v2.0.a1
pyrus_communis	pycom08g19240 pycom15g36840
rosa_chinensis	RchiOBHm_Chr7g0225551 RchiOBHm_Chr7g0225581
rosa_laevigata	RLG00000001804 RLG00000001806
rosa_multiflora	Rmu_co8377913.1_g000001 Rmu_sc0003876.1_g000021 Rmu_sc0006321.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233670 Rroxscaffold_3G00233690
rosa_rugosa	Rorug07G0231600 Rorug07G0231800
rosa_samantha	Rh7AG372300 Rh7AG372500 Rh7BG365400 Rh7BG365500 Rh7CG390600 Rh7CG390800 Rh7DG376200 Rh7DG376300
rosa_wichuraiana	Rw7G031750 Rw7G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2418
AasI	GACNNNNNNGTC	3 cut(s)	1069, 1165, 1833
Acc16I	TGCGCA	1 cut(s)	1513
Acc36I	ACCTGC	2 cut(s)	1517, 1652
Acc65I	GGTACC	2 cut(s)	400, 655
AccB1I	GGYRCC	5 cut(s)	275, 400, 530, 655, 2015
AccB7I	CCANNNNNTGG	1 cut(s)	1870
AccI	GTMKAC	2 cut(s)	608, 2466
AccII	CGCG	1 cut(s)	862
AccIII	TCCGGA	2 cut(s)	334, 589
AclWI	GGATC	7 cut(s)	1264, 1677, 1690, 1799, 1930, 2498, 2655
AcoI	YGGCCR	5 cut(s)	155, 420, 790, 852, 2079
AcsI	RAATTY	1 cut(s)	2564
AcuI	CTGAAG	2 cut(s)	26, 2271
AcvI	CACGTG	1 cut(s)	1877
AcyI	GRCGYC	2 cut(s)	276, 531
AdeI	CACNNNGTG	1 cut(s)	988
AflIII	ACRYGT	2 cut(s)	108, 2956
AgeI	ACCGGT	1 cut(s)	2535
AhdI	GACNNNNNGTC	1 cut(s)	2196
AjiI	CACGTC	5 cut(s)	66, 100, 118, 2401, 2445
AjnI	CCWGG	8 cut(s)	271, 1010, 1488, 1863, 1918, 2112, 2224, 2368
AleI	CACNNNNGTG	1 cut(s)	2901
AloI	GAACNNNNNNTCC	4 cut(s)	483, 515, 738, 770
Alw21I	GWGCWC	3 cut(s)	1853, 2617, 2802
Alw44I	GTGCAC	2 cut(s)	1849, 2798
AlwI	GGATC	7 cut(s)	1264, 1677, 1690, 1799, 1930, 2498, 2655
AlwNI	CAGNNNCTG	2 cut(s)	1870, 2507
Ama87I	CYCGRG	2 cut(s)	1195, 2521
Aor13HI	TCCGGA	2 cut(s)	334, 589
ApaLI	GTGCAC	2 cut(s)	1849, 2798
ApoI	RAATTY	1 cut(s)	2564
ArsI	GACNNNNNNTTYG	2 cut(s)	2390, 2422
AsiGI	ACCGGT	1 cut(s)	2535
Asp700I	GAANNNNTTC	1 cut(s)	2840
Asp718I	GGTACC	2 cut(s)	400, 655
AspLEI	GCGC	5 cut(s)	278, 533, 862, 1514, 2090
AspS9I	GGNCC	9 cut(s)	464, 719, 871, 1001, 1167, 1835, 1970, 2273, 2473
AsuC2I	CCSGG	6 cut(s)	1005, 1032, 1224, 2083, 2522, 2523
AsuHPI	GGTGA	7 cut(s)	202, 928, 1814, 2183, 2561, 2591, 2746
AsuII	TTCGAA	1 cut(s)	1019
AvaI	CYCGRG	2 cut(s)	1195, 2521
AvaII	GGWCC	8 cut(s)	464, 719, 871, 1167, 1835, 1970, 2273, 2473
BaeGI	GKGCMC	2 cut(s)	1853, 2802
BanI	GGYRCC	5 cut(s)	275, 400, 530, 655, 2015
BauI	CACGAG	2 cut(s)	875, 1243
BbrPI	CACGTG	1 cut(s)	1877
BbsI	GAAGAC	3 cut(s)	1236, 1268, 2437
Bbv12I	GWGCWC	3 cut(s)	1853, 2617, 2802
BbvCI	CCTCAGC	1 cut(s)	1050
BceAI	ACGGC	2 cut(s)	407, 2042
BcgI	CGANNNNNNTGC	4 cut(s)	363, 397, 618, 652
BciT130I	CCWGG	8 cut(s)	273, 1012, 1490, 1865, 1920, 2114, 2226, 2370
BciVI	GTATCC	4 cut(s)	1256, 1559, 2460, 2564
BcnI	CCSGG	6 cut(s)	1005, 1032, 1224, 2083, 2522, 2523
BfaI	CTAG	5 cut(s)	1467, 1787, 2606, 2711, 2918
BfmI	CTRYAG	3 cut(s)	207, 225, 1641
BfoI	RGCGCY	2 cut(s)	279, 534
BfuAI	ACCTGC	2 cut(s)	1517, 1652
BfuI	GTATCC	4 cut(s)	1256, 1559, 2460, 2564
BmcAI	AGTACT	1 cut(s)	213
Bme18I	GGWCC	8 cut(s)	464, 719, 871, 1167, 1835, 1970, 2273, 2473
BmeRI	GACNNNNNGTC	1 cut(s)	2196
BmeT110I	CYCGRG	2 cut(s)	1195, 2521
BmgBI	CACGTC	5 cut(s)	66, 100, 118, 2401, 2445
BmgT120I	GGNCC	9 cut(s)	464, 719, 871, 1001, 1167, 1835, 1970, 2273, 2473
BmsI	GCATC	9 cut(s)	91, 328, 492, 583, 747, 847, 1770, 2113, 2140
BpiI	GAAGAC	3 cut(s)	1236, 1268, 2437
BpmI	CTGGAG	3 cut(s)	510, 1902, 2319
Bpu10I	CCTNAGC	3 cut(s)	1050, 1647, 2846
Bpu14I	TTCGAA	1 cut(s)	1019
BpuEI	CTTGAG	3 cut(s)	1892, 2439, 2920
BpuMI	CCSGG	6 cut(s)	1005, 1032, 1224, 2083, 2522, 2523
BsaAI	YACGTR	1 cut(s)	1877
BsaBI	GATNNNNATC	1 cut(s)	1803
BsaHI	GRCGYC	2 cut(s)	276, 531
BsaI	GGTCTC	4 cut(s)	431, 686, 1185, 2491
BsaWI	WCCGGW	4 cut(s)	187, 334, 589, 2535
BsaXI	ACNNNNNCTCC	8 cut(s)	483, 513, 738, 768, 1713, 1743, 2934, 2964
Bse118I	RCCGGY	3 cut(s)	127, 141, 2535
Bse1I	ACTGG	5 cut(s)	86, 466, 721, 793, 2551
Bse3DI	GCAATG	5 cut(s)	890, 1137, 1235, 1987, 2391
Bse8I	GATNNNNATC	1 cut(s)	1803
BseAI	TCCGGA	2 cut(s)	334, 589
BseBI	CCWGG	8 cut(s)	273, 1012, 1490, 1865, 1920, 2114, 2226, 2370
BseGI	GGATG	8 cut(s)	82, 343, 473, 598, 728, 1420, 1849, 2890
BseJI	GATNNNNATC	1 cut(s)	1803
BseMI	GCAATG	5 cut(s)	890, 1137, 1235, 1987, 2391
BseMII	CTCAG	6 cut(s)	528, 783, 1064, 1110, 1725, 2867
BseNI	ACTGG	5 cut(s)	86, 466, 721, 793, 2551
BseRI	GAGGAG	2 cut(s)	2316, 2657
BseSI	GKGCMC	2 cut(s)	1853, 2802
BseX3I	CGGCCG	2 cut(s)	420, 852
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	945
Bsh1236I	CGCG	1 cut(s)	862
Bsh1285I	CGRYCG	2 cut(s)	423, 855
BshNI	GGYRCC	5 cut(s)	275, 400, 530, 655, 2015
BshTI	ACCGGT	1 cut(s)	2535
BsiEI	CGRYCG	2 cut(s)	423, 855
BsiHKAI	GWGCWC	3 cut(s)	1853, 2617, 2802
BsiHKCI	CYCGRG	2 cut(s)	1195, 2521
BsiWI	CGTACG	1 cut(s)	993
BslFI	GGGAC	4 cut(s)	1013, 1153, 1956, 2459
BsmFI	GGGAC	4 cut(s)	1013, 1153, 1956, 2459
BsmI	GAATGC	1 cut(s)	2349
Bso31I	GGTCTC	4 cut(s)	431, 686, 1185, 2491
BsoBI	CYCGRG	2 cut(s)	1195, 2521
Bsp119I	TTCGAA	1 cut(s)	1019
Bsp1286I	GDGCHC	3 cut(s)	1853, 2617, 2802
Bsp13I	TCCGGA	2 cut(s)	334, 589
Bsp1407I	TGTACA	1 cut(s)	1134
Bsp19I	CCATGG	2 cut(s)	279, 534
BspCNI	CTCAG	6 cut(s)	527, 782, 1063, 1111, 1726, 2866
BspEI	TCCGGA	2 cut(s)	334, 589
BspFNI	CGCG	1 cut(s)	862
BspHI	TCATGA	1 cut(s)	2200
BspMAI	CTGCAG	1 cut(s)	1645
BspMI	ACCTGC	2 cut(s)	1517, 1652
BspPI	GGATC	7 cut(s)	1264, 1677, 1690, 1799, 1930, 2498, 2655
BspT104I	TTCGAA	1 cut(s)	1019
BspT107I	GGYRCC	5 cut(s)	275, 400, 530, 655, 2015
BspTNI	GGTCTC	4 cut(s)	431, 686, 1185, 2491
BsrDI	GCAATG	5 cut(s)	890, 1137, 1235, 1987, 2391
BsrFI	RCCGGY	3 cut(s)	127, 141, 2535
BsrGI	TGTACA	1 cut(s)	1134
BsrI	ACTGG	5 cut(s)	86, 466, 721, 793, 2551
BssAI	RCCGGY	3 cut(s)	127, 141, 2535
BssNI	GRCGYC	2 cut(s)	276, 531
BssSI	CACGAG	2 cut(s)	875, 1243
BssT1I	CCWWGG	5 cut(s)	279, 342, 534, 597, 1956
Bst2BI	CACGAG	2 cut(s)	875, 1243
Bst2UI	CCWGG	8 cut(s)	273, 1012, 1490, 1865, 1920, 2114, 2226, 2370
Bst6I	CTCTTC	4 cut(s)	875, 1201, 1629, 2244
BstACI	GRCGYC	2 cut(s)	276, 531
BstAPI	GCANNNNNTGC	2 cut(s)	2022, 2150
BstAUI	TGTACA	1 cut(s)	1134
BstBAI	YACGTR	1 cut(s)	1877
BstBI	TTCGAA	1 cut(s)	1019
BstDSI	CCRYGG	2 cut(s)	279, 534
BstEII	GGTNACC	2 cut(s)	2363, 2516
BstENI	CCTNNNNNAGG	1 cut(s)	2043
BstF5I	GGATG	8 cut(s)	82, 343, 473, 598, 728, 1420, 1849, 2890
BstFNI	CGCG	1 cut(s)	862
BstH2I	RGCGCY	2 cut(s)	279, 534
BstHHI	GCGC	5 cut(s)	278, 533, 862, 1514, 2090
BstMCI	CGRYCG	2 cut(s)	423, 855
BstNI	CCWGG	8 cut(s)	273, 1012, 1490, 1865, 1920, 2114, 2226, 2370
BstNSI	RCATGY	3 cut(s)	112, 1326, 2960
BstPI	GGTNACC	2 cut(s)	2363, 2516
BstSFI	CTRYAG	3 cut(s)	207, 225, 1641
BstSLI	GKGCMC	2 cut(s)	1853, 2802
BstUI	CGCG	1 cut(s)	862
BstV2I	GAAGAC	3 cut(s)	1236, 1268, 2437
BstX2I	RGATCY	2 cut(s)	1669, 2503
BstXI	CCANNNNNNTGG	1 cut(s)	1496
BstYI	RGATCY	2 cut(s)	1669, 2503
BstZI	CGGCCG	2 cut(s)	420, 852
BsuI	GTATCC	4 cut(s)	1256, 1559, 2460, 2564
BtgI	CCRYGG	2 cut(s)	279, 534
BtgZI	GCGATG	1 cut(s)	469
BtrI	CACGTC	5 cut(s)	66, 100, 118, 2401, 2445
BtsCI	GGATG	8 cut(s)	82, 343, 473, 598, 728, 1420, 1849, 2890
BtsI	GCAGTG	5 cut(s)	937, 1398, 1719, 1925, 2106
BveI	ACCTGC	2 cut(s)	1517, 1652
CaiI	CAGNNNCTG	2 cut(s)	1870, 2507
CciI	TCATGA	1 cut(s)	2200
CfoI	GCGC	5 cut(s)	278, 533, 862, 1514, 2090
Cfr10I	RCCGGY	3 cut(s)	127, 141, 2535
Cfr13I	GGNCC	9 cut(s)	464, 719, 871, 1001, 1167, 1835, 1970, 2273, 2473
Cfr9I	CCCGGG	1 cut(s)	2521
CseI	GACGC	2 cut(s)	1059, 1772
CsiI	ACCWGGT	2 cut(s)	1010, 1488
CspAI	ACCGGT	1 cut(s)	2535
CspCI	CAANNNNNGTGG	6 cut(s)	2056, 2058, 2091, 2093, 2737, 2772
DinI	GGCGCC	2 cut(s)	277, 532
DraIII	CACNNNGTG	1 cut(s)	988
DrdI	GACNNNNNNGTC	3 cut(s)	1069, 1165, 1833
DriI	GACNNNNNGTC	1 cut(s)	2196
DseDI	GACNNNNNNGTC	3 cut(s)	1069, 1165, 1833
EaeI	YGGCCR	5 cut(s)	155, 420, 790, 852, 2079
EagI	CGGCCG	2 cut(s)	420, 852
Eam1104I	CTCTTC	4 cut(s)	875, 1201, 1629, 2244
Eam1105I	GACNNNNNGTC	1 cut(s)	2196
EarI	CTCTTC	4 cut(s)	875, 1201, 1629, 2244
EciI	GGCGGA	2 cut(s)	208, 884
EclXI	CGGCCG	2 cut(s)	420, 852
Eco130I	CCWWGG	5 cut(s)	279, 342, 534, 597, 1956
Eco147I	AGGCCT	1 cut(s)	2049
Eco31I	GGTCTC	4 cut(s)	431, 686, 1185, 2491
Eco32I	GATATC	1 cut(s)	2722
Eco47I	GGWCC	8 cut(s)	464, 719, 871, 1167, 1835, 1970, 2273, 2473
Eco52I	CGGCCG	2 cut(s)	420, 852
Eco57I	CTGAAG	2 cut(s)	26, 2271
Eco72I	CACGTG	1 cut(s)	1877
Eco88I	CYCGRG	2 cut(s)	1195, 2521
Eco91I	GGTNACC	2 cut(s)	2363, 2516
EcoNI	CCTNNNNNAGG	1 cut(s)	2043
EcoO109I	RGGNCCY	3 cut(s)	1970, 2273, 2473
EcoO65I	GGTNACC	2 cut(s)	2363, 2516
EcoRII	CCWGG	8 cut(s)	271, 1010, 1488, 1863, 1918, 2112, 2224, 2368
EcoRV	GATATC	1 cut(s)	2722
EcoT14I	CCWWGG	5 cut(s)	279, 342, 534, 597, 1956
EgeI	GGCGCC	2 cut(s)	277, 532
EheI	GGCGCC	2 cut(s)	277, 532
ErhI	CCWWGG	5 cut(s)	279, 342, 534, 597, 1956
FalI	AAGNNNNNCTT	2 cut(s)	1710, 1742
FaqI	GGGAC	4 cut(s)	1013, 1153, 1956, 2459
FauI	CCCGC	2 cut(s)	855, 1144
FauNDI	CATATG	2 cut(s)	1822, 2461
FblI	GTMKAC	2 cut(s)	608, 2466
FokI	GGATG	8 cut(s)	69, 350, 460, 605, 715, 1427, 1856, 2897
FspBI	CTAG	5 cut(s)	1467, 1787, 2606, 2711, 2918
FspI	TGCGCA	1 cut(s)	1513
GlaI	GCGC	5 cut(s)	277, 532, 861, 1513, 2089
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	3 cut(s)	510, 1902, 2319
HaeII	RGCGCY	2 cut(s)	279, 534
HgaI	GACGC	2 cut(s)	1059, 1772
HhaI	GCGC	5 cut(s)	278, 533, 862, 1514, 2090
Hin1I	GRCGYC	2 cut(s)	276, 531
Hin6I	GCGC	5 cut(s)	276, 531, 860, 1512, 2088
HinP1I	GCGC	5 cut(s)	276, 531, 860, 1512, 2088
HincII	GTYRAC	2 cut(s)	133, 1116
HindII	GTYRAC	2 cut(s)	133, 1116
HinfI	GANTC	3 cut(s)	1219, 1586, 2785
HphI	GGTGA	7 cut(s)	202, 928, 1814, 2183, 2561, 2591, 2746
Hpy188I	TCNGA	5 cut(s)	253, 973, 1103, 1190, 1544
Hpy188III	TCNNGA	9 cut(s)	335, 590, 877, 1243, 1260, 1451, 1909, 2201, 2298
Hpy99I	CGWCG	3 cut(s)	428, 1001, 1075
HpyCH4IV	ACGT	9 cut(s)	65, 99, 117, 908, 996, 1266, 1876, 2400, 2444
HpySE526I	ACGT	9 cut(s)	65, 99, 117, 908, 996, 1266, 1876, 2400, 2444
Hsp92I	GRCGYC	2 cut(s)	276, 531
HspAI	GCGC	5 cut(s)	276, 531, 860, 1512, 2088
KasI	GGCGCC	2 cut(s)	275, 530
Kpn2I	TCCGGA	2 cut(s)	334, 589
KpnI	GGTACC	2 cut(s)	404, 659
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
LmnI	GCTCC	4 cut(s)	1034, 1709, 1867, 2384
LweI	GCATC	9 cut(s)	91, 328, 492, 583, 747, 847, 1770, 2113, 2140
MabI	ACCWGGT	2 cut(s)	1010, 1488
MaeI	CTAG	5 cut(s)	1467, 1787, 2606, 2711, 2918
MaeII	ACGT	9 cut(s)	65, 99, 117, 908, 996, 1266, 1876, 2400, 2444
MfeI	CAATTG	2 cut(s)	1357, 2184
MflI	RGATCY	2 cut(s)	1669, 2503
MhlI	GDGCHC	3 cut(s)	1853, 2617, 2802
MluCI	AATT	8 cut(s)	1357, 1765, 2005, 2184, 2208, 2340, 2564, 2803
Mly113I	GGCGCC	2 cut(s)	276, 531
MlyI	GAGTC	2 cut(s)	1213, 2794
MmeI	TCCRAC	2 cut(s)	276, 951
MreI	CGCCGGCG	1 cut(s)	141
MroI	TCCGGA	2 cut(s)	334, 589
MroNI	GCCGGC	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	2840
MseI	TTAA	5 cut(s)	263, 1179, 1311, 1494, 2981
MslI	CAYNNNNRTG	4 cut(s)	1386, 1778, 2492, 2901
MunI	CAATTG	2 cut(s)	1357, 2184
Mva1269I	GAATGC	1 cut(s)	2349
MvaI	CCWGG	8 cut(s)	273, 1012, 1490, 1865, 1920, 2114, 2226, 2370
MvnI	CGCG	1 cut(s)	862
NaeI	GCCGGC	1 cut(s)	143
NarI	GGCGCC	2 cut(s)	276, 531
NciI	CCSGG	6 cut(s)	1005, 1032, 1224, 2083, 2522, 2523
NcoI	CCATGG	2 cut(s)	279, 534
NdeI	CATATG	2 cut(s)	1822, 2461
NgoMIV	GCCGGC	1 cut(s)	141
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	5 cut(s)	190, 1573, 1729, 1984, 2549
NsbI	TGCGCA	1 cut(s)	1513
NspI	RCATGY	3 cut(s)	112, 1326, 2960
NspV	TTCGAA	1 cut(s)	1019
OliI	CACNNNNGTG	1 cut(s)	2901
PagI	TCATGA	1 cut(s)	2200
PceI	AGGCCT	1 cut(s)	2049
PciI	ACATGT	2 cut(s)	108, 2956
PctI	GAATGC	1 cut(s)	2349
PdiI	GCCGGC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	2840
PfeI	GAWTC	1 cut(s)	1586
Pfl23II	CGTACG	1 cut(s)	993
PflFI	GACNNNGTC	1 cut(s)	2471
PflMI	CCANNNNNTGG	1 cut(s)	1870
PfoI	TCCNGGA	3 cut(s)	1222, 1918, 2224
PinAI	ACCGGT	1 cut(s)	2535
PleI	GAGTC	2 cut(s)	1213, 2793
PluTI	GGCGCC	2 cut(s)	279, 534
PmaCI	CACGTG	1 cut(s)	1877
PmlI	CACGTG	1 cut(s)	1877
PpsI	GAGTC	2 cut(s)	1213, 2793
Ppu21I	YACGTR	1 cut(s)	1877
PpuMI	RGGWCCY	3 cut(s)	1970, 2273, 2473
PscI	ACATGT	2 cut(s)	108, 2956
PsiI	TTATAA	1 cut(s)	2418
Psp5II	RGGWCCY	3 cut(s)	1970, 2273, 2473
Psp6I	CCWGG	8 cut(s)	271, 1010, 1488, 1863, 1918, 2112, 2224, 2368
PspCI	CACGTG	1 cut(s)	1877
PspEI	GGTNACC	2 cut(s)	2363, 2516
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	8 cut(s)	271, 1010, 1488, 1863, 1918, 2112, 2224, 2368
PspLI	CGTACG	1 cut(s)	993
PspPI	GGNCC	9 cut(s)	464, 719, 871, 1001, 1167, 1835, 1970, 2273, 2473
PspPPI	RGGWCCY	3 cut(s)	1970, 2273, 2473
PsrI	GAACNNNNNNTAC	2 cut(s)	1601, 1633
PstI	CTGCAG	1 cut(s)	1645
PstNI	CAGNNNCTG	2 cut(s)	1870, 2507
PsuI	RGATCY	2 cut(s)	1669, 2503
PsyI	GACNNNGTC	1 cut(s)	2471
RseI	CAYNNNNRTG	4 cut(s)	1386, 1778, 2492, 2901
SaqAI	TTAA	5 cut(s)	263, 1179, 1311, 1494, 2981
Sau96I	GGNCC	9 cut(s)	464, 719, 871, 1001, 1167, 1835, 1970, 2273, 2473
ScaI	AGTACT	1 cut(s)	213
SchI	GAGTC	2 cut(s)	1213, 2794
SduI	GDGCHC	3 cut(s)	1853, 2617, 2802
SexAI	ACCWGGT	2 cut(s)	1010, 1488
SfaNI	GCATC	9 cut(s)	91, 328, 492, 583, 747, 847, 1770, 2113, 2140
SfcI	CTRYAG	3 cut(s)	207, 225, 1641
SfoI	GGCGCC	2 cut(s)	277, 532
SfuI	TTCGAA	1 cut(s)	1019
SgrAI	CRCCGGYG	1 cut(s)	141
SinI	GGWCC	8 cut(s)	464, 719, 871, 1167, 1835, 1970, 2273, 2473
SmaI	CCCGGG	1 cut(s)	2523
SmiMI	CAYNNNNRTG	4 cut(s)	1386, 1778, 2492, 2901
SmlI	CTYRAG	3 cut(s)	1907, 2454, 2899
SmoI	CTYRAG	3 cut(s)	1907, 2454, 2899
Sse9I	AATT	8 cut(s)	1357, 1765, 2005, 2184, 2208, 2340, 2564, 2803
SseBI	AGGCCT	1 cut(s)	2049
SspDI	GGCGCC	2 cut(s)	275, 530
SspMI	CTAG	5 cut(s)	1467, 1787, 2606, 2711, 2918
StuI	AGGCCT	1 cut(s)	2049
StyI	CCWWGG	5 cut(s)	279, 342, 534, 597, 1956
TaiI	ACGT	9 cut(s)	68, 102, 120, 911, 999, 1269, 1879, 2403, 2447
TaqI	TCGA	8 cut(s)	628, 757, 1019, 1797, 2310, 2611, 2718, 2783
TaqII	GACCGA	1 cut(s)	1823
TasI	AATT	8 cut(s)	1357, 1765, 2005, 2184, 2208, 2340, 2564, 2803
TatI	WGTACW	6 cut(s)	211, 1134, 1599, 1698, 2158, 2950
TauI	GCSGC	4 cut(s)	224, 854, 1322, 2144
TfiI	GAWTC	1 cut(s)	1586
Tru1I	TTAA	5 cut(s)	263, 1179, 1311, 1494, 2981
Tru9I	TTAA	5 cut(s)	263, 1179, 1311, 1494, 2981
TseFI	GTSAC	5 cut(s)	190, 1573, 1729, 1984, 2549
Tsp45I	GTSAC	5 cut(s)	190, 1573, 1729, 1984, 2549
TspDTI	ATGAA	2 cut(s)	2504, 2577
TspGWI	ACGGA	2 cut(s)	1269, 2589
TspMI	CCCGGG	1 cut(s)	2521
Tth111I	GACNNNGTC	1 cut(s)	2471
Van91I	CCANNNNNTGG	1 cut(s)	1870
VneI	GTGCAC	2 cut(s)	1849, 2798
VpaK11BI	GGWCC	8 cut(s)	464, 719, 871, 1167, 1835, 1970, 2273, 2473
XagI	CCTNNNNNAGG	1 cut(s)	2043
XapI	RAATTY	1 cut(s)	2564
XceI	RCATGY	3 cut(s)	112, 1326, 2960
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1105, 1954, 2074
XmaI	CCCGGG	1 cut(s)	2521
XmiI	GTMKAC	2 cut(s)	608, 2466
XmnI	GAANNNNTTC	1 cut(s)	2840
XspI	CTAG	5 cut(s)	1467, 1787, 2606, 2711, 2918
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.