Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003333

Physical Location & Seq

Genomic Coordinates Reverse (-)

21240091 .. 21240627

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0231800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTTTCTTTTGATTTGGAATCACGAAAGTGGGATGTCCTTGACGACAGCTTCCGTGGTAAATGGTCTACGGGAGTGGTGCTTTATGACGACGACCGATACTTGTTTTCCTTTGGCATTCAGAATCCCCTATGCCAAGATATAGCCGAAGCTCCGGGAATATATGTATTCGATATTAAGCTGCGTCAATGGCTCCTCGAACCCATTAAGGGTCTCCCCACTAATGGAAAAGTCCTTCCATACAGTTACACGCCAGACCCAGACCCAGAAGTGTTTGTTGACACAACATTCTCGGCATACTTGCTCCAAATCGGAAAGCAAGACGACCGCAAGTTGGCTTTGCTGTGGGACGGTCATGGCACACATCCAGAATCTCATGGTCCCCAATTGACACTTGTTTGGTCCAAGTTCGTAGTCAATGCCAGCACTAGTACTGCTGATCAAGCCCCCCACTTCTATGCCAATTCGTTGTCAAGTGGACTCTGTCCGCTTGATGACTACACCTACGAGCTGATCGATTGTGCAGCAGGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

178

Amino Acids

20.05

Weight (kDa)

4.48

Isoelectric Point (pI)

24.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09730 AT5G64570 AT5G64570 AT5G64570
fragaria_vesca	FvH4_5g30690 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710
malus_domestica	MD08G1221800.v1.1 MD15G1414100.v1.1
prunus_persica	Prupe.1G559400_v2.0.a1 Prupe.1G559400_v2.0.a1
pyrus_communis	pycom08g19240 pycom15g36840
rosa_chinensis	RchiOBHm_Chr7g0225551 RchiOBHm_Chr7g0225581
rosa_laevigata	RLG00000001804 RLG00000001806
rosa_multiflora	Rmu_co8377913.1_g000001 Rmu_sc0003876.1_g000021 Rmu_sc0006321.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233670 Rroxscaffold_3G00233690
rosa_rugosa	Rorug07G0231600 Rorug07G0231800
rosa_samantha	Rh7AG372300 Rh7AG372500 Rh7BG365400 Rh7BG365500 Rh7CG390600 Rh7CG390800 Rh7DG376200 Rh7DG376300
rosa_wichuraiana	Rw7G031750 Rw7G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	2 cut(s)	328, 488
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	3 cut(s)	209, 224, 334
AhlI	ACTAGT	1 cut(s)	428
AleI	CACNNNNGTG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	51, 152, 181, 511
AluI	AGCT	4 cut(s)	51, 152, 181, 511
Alw26I	GTCTC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	181, 524
AspS9I	GGNCC	2 cut(s)	380, 402
AsuC2I	CCSGG	1 cut(s)	156
AvaII	GGWCC	2 cut(s)	380, 402
BbvI	GCAGC	1 cut(s)	168
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	218
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	182, 525
BlsI	GCNGC	2 cut(s)	183, 526
BmcAI	AGTACT	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	2 cut(s)	380, 402
BmgT120I	GGNCC	2 cut(s)	380, 402
BmiI	GGNNCC	2 cut(s)	194, 382
BmrFI	CCNGG	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 224, 334
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	40, 364
BseLI	CCNNNNNNNGG	3 cut(s)	209, 224, 334
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	168
Bsh1285I	CGRYCG	2 cut(s)	97, 328
BshVI	ATCGAT	1 cut(s)	516
BsiEI	CGRYCG	2 cut(s)	97, 328
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	362, 366
BslI	CCNNNNNNNGG	3 cut(s)	209, 224, 334
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	2 cut(s)	362, 366
BsmI	GAATGC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	218
Bsp143I	GATC	2 cut(s)	439, 513
BspACI	CCGC	2 cut(s)	328, 488
BspDI	ATCGAT	1 cut(s)	516
BspLI	GGNNCC	2 cut(s)	194, 382
BspTNI	GGTCTC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	439, 513
Bst4CI	ACNGT	2 cut(s)	245, 353
BstC8I	GCNNGC	1 cut(s)	424
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	40, 364
BstKTI	GATC	2 cut(s)	442, 516
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	439, 513
BstMCI	CGRYCG	2 cut(s)	97, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 443
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	516
BsuTUI	ATCGAT	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	40, 364
Cac8I	GCNNGC	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	380, 402
ClaI	ATCGAT	1 cut(s)	516
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	2 cut(s)	356, 377
CviJI	RGCY	8 cut(s)	51, 146, 152, 181, 193, 338, 446, 511
CviKI_1	RGCY	8 cut(s)	51, 146, 152, 181, 193, 338, 446, 511
CviQI	GTAC	1 cut(s)	432
DpnI	GATC	2 cut(s)	441, 515
DpnII	GATC	2 cut(s)	439, 513
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	380, 402
FaeI	CATG	2 cut(s)	359, 380
FaqI	GGGAC	2 cut(s)	362, 366
FatI	CATG	2 cut(s)	355, 376
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	182, 525
FokI	GGATG	2 cut(s)	47, 351
Fsp4HI	GCNGC	2 cut(s)	182, 525
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	2 cut(s)	182, 525
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	359, 380
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	20, 124, 371, 480
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	3 cut(s)	69, 280, 479
Hpy188I	TCNGA	2 cut(s)	123, 314
Hpy188III	TCNNGA	2 cut(s)	24, 368
Hpy8I	GTNNAC	3 cut(s)	69, 280, 479
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	245, 353
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 443
Hsp92II	CATG	2 cut(s)	359, 380
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	439, 513
LmnI	GCTCC	3 cut(s)	157, 198, 309
LpnPI	CCDG	7 cut(s)	168, 267, 273, 279, 381, 436, 513
Lsp1109I	GCAGC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	441, 515
MboI	GATC	2 cut(s)	439, 513
MfeI	CAATTG	1 cut(s)	386
MluCI	AATT	2 cut(s)	386, 463
MlyI	GAGTC	1 cut(s)	474
MnlI	CCTC	1 cut(s)	206
MseI	TTAA	2 cut(s)	177, 207
MslI	CAYNNNNRTG	2 cut(s)	28, 456
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	190, 443
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	439, 513
NlaIII	CATG	2 cut(s)	359, 380
NlaIV	GGNNCC	2 cut(s)	194, 382
NmeAIII	GCCGAG	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PctI	GAATGC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	20, 124, 371
PflFI	GACNNNGTC	1 cut(s)	483
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	183, 526
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	194, 382
PspPI	GGNCC	2 cut(s)	380, 402
PsyI	GACNNNGTC	1 cut(s)	483
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	2 cut(s)	28, 456
SaqAI	TTAA	2 cut(s)	177, 207
SatI	GCNGC	2 cut(s)	182, 525
Sau3AI	GATC	2 cut(s)	439, 513
Sau96I	GGNCC	2 cut(s)	380, 402
ScaI	AGTACT	1 cut(s)	433
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	53, 154, 183, 506, 513
SinI	GGWCC	2 cut(s)	380, 402
SmiMI	CAYNNNNRTG	2 cut(s)	28, 456
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	2 cut(s)	386, 463
SsiI	CCGC	2 cut(s)	328, 488
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	245, 353
TaqI	TCGA	3 cut(s)	171, 198, 516
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	386, 463
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	20, 124, 371
Tru1I	TTAA	2 cut(s)	177, 207
Tru9I	TTAA	2 cut(s)	177, 207
TseI	GCWGC	2 cut(s)	181, 524
TspGWI	ACGGA	1 cut(s)	44
Tth111I	GACNNNGTC	1 cut(s)	483
VpaK11BI	GGWCC	2 cut(s)	380, 402
XmiI	GTMKAC	1 cut(s)	68
XspI	CTAG	1 cut(s)	429
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.