Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003333

Physical Location & Seq

Genomic Coordinates Reverse (-)

21194507 .. 21197244

Gene Structure 2738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0231600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGAGCTCAACCTCCGGTGGAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGAGAGAATACGGCAAAAAACATGGTCTCCGATCAGATTTCTCAGGCCGTACTATCCACTTCCAACCTCCTCCACCTCATGCAGCAGTCCTCGCCTTCCCAGGCCCAACTGATAAAGCTTCCAAAGAACCTTTTGCTCAAATCATCTACAATCAAGAATACTGGACATTTATTGGAGCAGATGCCTCGAGTCATTTCATCTCTGGATGCACATATGGAAACTGGGTTGCAAAGTCTGCCTCATCTGCAAACTGTAATCCAACTACTTGCAAATATGGAAAGCTGCCAACTCAGTTCTCTCTCACAAGCTCATGTCCTTCAAGAGGAACATGAGGGAGAAAACCAACCTTCAAATGTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

137

Amino Acids

14.78

Weight (kDa)

6.04

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09730 AT5G64570 AT5G64570 AT5G64570
fragaria_vesca	FvH4_5g30690 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710
malus_domestica	MD08G1221800.v1.1 MD15G1414100.v1.1
prunus_persica	Prupe.1G559400_v2.0.a1 Prupe.1G559400_v2.0.a1
pyrus_communis	pycom08g19240 pycom15g36840
rosa_chinensis	RchiOBHm_Chr7g0225551 RchiOBHm_Chr7g0225581
rosa_laevigata	RLG00000001804 RLG00000001806
rosa_multiflora	Rmu_co8377913.1_g000001 Rmu_sc0003876.1_g000021 Rmu_sc0006321.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233670 Rroxscaffold_3G00233690
rosa_rugosa	Rorug07G0231600 Rorug07G0231800
rosa_samantha	Rh7AG372300 Rh7AG372500 Rh7BG365400 Rh7BG365500 Rh7CG390600 Rh7CG390800 Rh7DG376200 Rh7DG376300
rosa_wichuraiana	Rw7G031750 Rw7G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	371, 402
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	4 cut(s)	9, 169, 333, 359
AluI	AGCT	4 cut(s)	9, 169, 333, 359
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	2 cut(s)	96, 153
ApeKI	GCWGC	9 cut(s)	30, 33, 36, 39, 42, 45, 48, 133, 333
AspS9I	GGNCC	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	9 cut(s)	42, 45, 48, 51, 54, 57, 60, 145, 320
BceAI	ACGGC	2 cut(s)	78, 83
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	9 cut(s)	31, 34, 37, 40, 43, 46, 49, 134, 334
BlsI	GCNGC	9 cut(s)	32, 35, 38, 41, 44, 47, 50, 135, 335
Bme1390I	CCNGG	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	222, 247
BmuI	ACTGGG	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	217, 277
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	107, 355
BseNI	ACTGG	2 cut(s)	217, 277
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	9 cut(s)	42, 45, 48, 51, 54, 57, 60, 145, 320
BshFI	GGCC	2 cut(s)	98, 155
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	98, 155
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	98, 155
BspCNI	CTCAG	2 cut(s)	106, 354
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	217, 277
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	304
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	93, 341
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	8 cut(s)	36, 39, 42, 45, 48, 142, 286, 295
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	9 cut(s)	42, 45, 48, 51, 54, 57, 60, 145, 320
BsuRI	GGCC	2 cut(s)	98, 155
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	4 cut(s)	73, 130, 362, 380
CviJI	RGCY	6 cut(s)	9, 98, 155, 169, 333, 359
CviKI_1	RGCY	6 cut(s)	9, 98, 155, 169, 333, 359
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	2 cut(s)	93, 341
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	4 cut(s)	76, 133, 365, 383
FaiI	YATR	7 cut(s)	74, 131, 264, 266, 326, 363, 381
FatI	CATG	4 cut(s)	72, 129, 361, 379
FauNDI	CATATG	1 cut(s)	264
Fnu4HI	GCNGC	9 cut(s)	31, 34, 37, 40, 43, 46, 49, 134, 334
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	9 cut(s)	31, 34, 37, 40, 43, 46, 49, 134, 334
GluI	GCNGC	9 cut(s)	31, 34, 37, 40, 43, 46, 49, 134, 334
HaeIII	GGCC	2 cut(s)	98, 155
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	4 cut(s)	76, 133, 365, 383
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	82, 87
Hpy188III	TCNNGA	3 cut(s)	205, 254, 371
HpyAV	CCTTC	3 cut(s)	156, 377, 408
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	5 cut(s)	133, 260, 280, 298, 320
HpyF10VI	GCNNNNNNNGC	8 cut(s)	36, 39, 42, 45, 48, 142, 286, 295
HpyF3I	CTNAG	2 cut(s)	93, 341
Hsp92II	CATG	4 cut(s)	76, 133, 365, 383
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	31, 80, 137, 164, 198, 239, 258
Lsp1109I	GCAGC	9 cut(s)	42, 45, 48, 51, 54, 57, 60, 145, 320
LweI	GCATC	2 cut(s)	222, 247
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	138, 334
MnlI	CCTC	9 cut(s)	25, 128, 131, 137, 151, 246, 300, 367, 376
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	8 cut(s)	36, 39, 42, 45, 48, 142, 286, 295
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	4 cut(s)	76, 133, 365, 383
PaeR7I	CTCGAG	1 cut(s)	237
PkrI	GCNGC	9 cut(s)	32, 35, 38, 41, 44, 47, 50, 135, 335
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	154
PspXI	VCTCGAGB	1 cut(s)	237
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	11
SatI	GCNGC	9 cut(s)	31, 34, 37, 40, 43, 46, 49, 134, 334
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	9 cut(s)	11, 17, 120, 129, 171, 183, 335, 361, 400
SfaNI	GCATC	2 cut(s)	222, 247
Sfr274I	CTCGAG	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	238
TseI	GCWGC	9 cut(s)	30, 33, 36, 39, 42, 45, 48, 133, 333
TspDTI	ATGAA	1 cut(s)	237
XagI	CCTNNNNNAGG	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.