Rh7AG372500

Beta-xylosidase alpha-L-arabinofuranosidase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
48101090 .. 48103422
2333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG372500.1

Sequence Viewer

Length: 1245 bp
ATGGCCTCCTCCTTTCTCTGTTCCTCTGTTCAGAACAGACTACTTCAATACAGAGCAGTGCCGAAGGCCTTGCTCTGTTTCACTCTTTGTTACATACTGTTGTTCTCTCTCTCTGTGATCTCAGTTTCCGGCCAGTCGTTTGCCTGCGGCGACGGTGCCAGCAGCTTCCCGTTCTGCGACAAGTCGTTGGCGGCCGATGCGCGGGTGGCGGACCTGGTGCAGAGGCTGACATTGCAGGAGAAGATTACATTTCTGGTGGACAGTGCAGGGAATGTGAGCAGGCTTGGAATACCCAACTACCAGTGGTGGTCGGAGGCTTTACACGGAGTGTCGTCCATCGGCCGCCCGGGGGCCAAATATTCGACTGACATTCCGGGAGCTACCAGCTTCCCTCAGCCCATTTTGACCGCCGCGTCGTTCAACAACTCACTCTACGAAGCCATTGGAAGGGTGGTGTCAACTGAGGCCAGAGCAATGTACAATATGGGATTGGCAGGATTGACATTCTGGGCCCCAAACATTAACATTTTCCGAGACCCGAGATGGGGAAGAGGCCAGGAGACTCCGGGAGAAGACCCATTGCTCACGAGTAACTACAGTTCGGGATACGTTAGAGGTCTTCAGCAAACCGATAGCGAAGACAAAAACAGGCTTAAAGTTGCAGCATGTTGTAAACATTATACAGCCTATGATTTGGACCATTGGAACGGATATGACAGATATACCTTCAATGCAGTGGTAACAAAACAAGATATGGATGATACATTTCAACCACCATTCAGAAGTTGTGTTCTTGATGGGAATGCTGCTAGTGTCATGTGTTCATACCAACAGGTTAATGGAAAACCAACCTGCGCAGACCCAGACCTTCTTTCTGGGGTTATCCGAGGCGAATGGAAGTTGAATGGATACATAGTCACCGATTGTGATTCAATAGAGGTGTACTACGACAACCAACACTACACCAAAACACCAGAAGAAGCTGCAGCTACGGCTATATTGGCAGGAGTGGATCTAGACTGTGGATTTTTCCTAAGCAATTACACAGAAGGAGCAGTGAGAGGAGGACTTATAACTGAGGCAGCCATTGACAAGGCCATCACAAACAATTTTGGCACTTTGATGCGTCTAGGCTTCTTCGATGGTGATCCAAGCAAGCAACCATATGGAGATCTCGGTCCAAAGGATGTGTGCACTCCAGAGAGAACCAGGAGCTGGCACGTGAAACCGCGAGACAAGGGATAG

Protein Analysis

414

Amino Acids

45.44

Weight (kDa)

5.35

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 126 - 367 7.7e-34 Glycosyl hydrolase family 3 N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1073
AasI GACNNNNNNGTC 1 cut(s) 412
Acc16I TGCGCA 1 cut(s) 856
Acc36I ACCTGC 1 cut(s) 860
AccB1I GGYRCC 1 cut(s) 155
AccB7I CCANNNNNTGG 1 cut(s) 1215
AccII CGCG 3 cut(s) 202, 413, 1231
AciI CCGC 8 cut(s) 147, 191, 202, 209, 343, 408, 411, 1229
AclWI GGATC 2 cut(s) 1020, 1142
AcoI YGGCCR 3 cut(s) 130, 192, 340
AcuI CTGAAG 1 cut(s) 605
AcvI CACGTG 1 cut(s) 1222
AdeI CACNNNGTG 1 cut(s) 328
AfaI GTAC 2 cut(s) 479, 944
AfiI CCNNNNNNNGG 6 cut(s) 201, 349, 447, 544, 545, 1215
AgsI TTSAA 6 cut(s) 47, 421, 730, 770, 904, 933
AjnI CCWGG 3 cut(s) 213, 555, 1208
AluBI AGCT 6 cut(s) 165, 380, 387, 983, 989, 1215
AluI AGCT 6 cut(s) 165, 380, 387, 983, 989, 1215
Alw21I GWGCWC 1 cut(s) 1196
Alw26I GTCTC 3 cut(s) 528, 554, 1227
Alw44I GTGCAC 1 cut(s) 1192
AlwI GGATC 2 cut(s) 1020, 1142
AlwNI CAGNNNCTG 2 cut(s) 226, 1215
Ama87I CYCGRG 2 cut(s) 346, 538
ApaI GGGCCC 1 cut(s) 514
ApaLI GTGCAC 1 cut(s) 1192
ApeKI GCWGC 6 cut(s) 162, 662, 806, 983, 986, 1082
AspLEI GCGC 2 cut(s) 202, 857
AspS9I GGNCC 6 cut(s) 211, 351, 510, 511, 697, 1178
AsuC2I CCSGG 4 cut(s) 347, 348, 375, 567
AsuHPI GGTGA 2 cut(s) 910, 1157
AvaI CYCGRG 2 cut(s) 346, 538
AvaII GGWCC 3 cut(s) 211, 697, 1178
BaeGI GKGCMC 2 cut(s) 514, 1196
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 514
BauI CACGAG 1 cut(s) 586
BbrPI CACGTG 1 cut(s) 1222
BbsI GAAGAC 3 cut(s) 579, 611, 645
Bbv12I GWGCWC 1 cut(s) 1196
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 6 cut(s) 174, 674, 793, 970, 998, 1094
BccI CCATC 5 cut(s) 344, 537, 791, 1106, 1136
BceAI ACGGC 1 cut(s) 1008
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 3 cut(s) 215, 557, 1210
BciVI GTATCC 2 cut(s) 599, 902
BcnI CCSGG 4 cut(s) 347, 348, 375, 567
BcoDI GTCTC 3 cut(s) 528, 554, 1227
BfaI CTAG 3 cut(s) 810, 1016, 1130
BfmI CTRYAG 2 cut(s) 595, 984
BfuAI ACCTGC 1 cut(s) 860
BfuI GTATCC 2 cut(s) 599, 902
BglII AGATCT 1 cut(s) 1171
Bme1390I CCNGG 7 cut(s) 215, 347, 348, 375, 557, 567, 1210
Bme18I GGWCC 3 cut(s) 211, 697, 1178
BmeT110I CYCGRG 2 cut(s) 346, 538
BmgT120I GGNCC 6 cut(s) 211, 351, 510, 511, 697, 1178
BmiI GGNNCC 4 cut(s) 157, 352, 512, 513
BmrFI CCNGG 7 cut(s) 215, 347, 348, 375, 557, 567, 1210
BmsI GCATC 2 cut(s) 187, 1113
BpiI GAAGAC 3 cut(s) 579, 611, 645
BpmI CTGGAG 1 cut(s) 1182
Bpu10I CCTNAGC 2 cut(s) 393, 1034
BpuMI CCSGG 4 cut(s) 347, 348, 375, 567
BsaAI YACGTR 1 cut(s) 1222
BsaBI GATNNNNATC 1 cut(s) 1146
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 346, 347, 886
Bsc4I CCNNNNNNNGG 6 cut(s) 201, 349, 447, 544, 545, 1215
Bse1I ACTGG 2 cut(s) 133, 301
Bse3DI GCAATG 3 cut(s) 230, 480, 578
Bse8I GATNNNNATC 1 cut(s) 1146
BseBI CCWGG 3 cut(s) 215, 557, 1210
BseDI CCNNGG 3 cut(s) 346, 347, 886
BseGI GGATG 2 cut(s) 763, 1192
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 6 cut(s) 201, 349, 447, 544, 545, 1215
BseMI GCAATG 3 cut(s) 230, 480, 578
BseMII CTCAG 4 cut(s) 135, 407, 453, 1068
BseNI ACTGG 2 cut(s) 133, 301
BseRI GAGGAG 1 cut(s) 1077
BseSI GKGCMC 2 cut(s) 514, 1196
BseX3I CGGCCG 2 cut(s) 192, 340
BseXI GCAGC 6 cut(s) 174, 674, 793, 970, 998, 1094
BsgI GTGCAG 2 cut(s) 239, 285
Bsh1236I CGCG 3 cut(s) 202, 413, 1231
Bsh1285I CGRYCG 2 cut(s) 195, 343
BshNI GGYRCC 1 cut(s) 155
BsiEI CGRYCG 2 cut(s) 195, 343
BsiHKAI GWGCWC 1 cut(s) 1196
BsiHKCI CYCGRG 2 cut(s) 346, 538
BsiSI CCGG 4 cut(s) 129, 347, 374, 566
BslI CCNNNNNNNGG 6 cut(s) 201, 349, 447, 544, 545, 1215
BsmAI GTCTC 3 cut(s) 528, 554, 1227
BsmI GAATGC 1 cut(s) 808
Bso31I GGTCTC 1 cut(s) 528
BsoBI CYCGRG 2 cut(s) 346, 538
Bsp120I GGGCCC 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 514, 1196
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 4 cut(s) 117, 1012, 1147, 1171
BspACI CCGC 8 cut(s) 147, 191, 202, 209, 343, 408, 411, 1229
BspCNI CTCAG 4 cut(s) 134, 406, 454, 1069
BspFNI CGCG 3 cut(s) 202, 413, 1231
BspLI GGNNCC 4 cut(s) 157, 352, 512, 513
BspMAI CTGCAG 1 cut(s) 988
BspMI ACCTGC 1 cut(s) 860
BspPI GGATC 2 cut(s) 1020, 1142
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 528
BsrDI GCAATG 3 cut(s) 230, 480, 578
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 2 cut(s) 133, 301
BssECI CCNNGG 3 cut(s) 346, 347, 886
BssMI GATC 4 cut(s) 117, 1012, 1147, 1171
BssSI CACGAG 1 cut(s) 586
Bst2BI CACGAG 1 cut(s) 586
Bst2UI CCWGG 3 cut(s) 215, 557, 1210
Bst4CI ACNGT 5 cut(s) 99, 155, 263, 599, 1022
Bst6I CTCTTC 1 cut(s) 544
BstAUI TGTACA 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 1222
BstC8I GCNNGC 5 cut(s) 145, 160, 281, 1157, 1217
BstDEI CTNAG 5 cut(s) 121, 393, 462, 1034, 1077
BstF5I GGATG 2 cut(s) 763, 1192
BstFNI CGCG 3 cut(s) 202, 413, 1231
BstHHI GCGC 2 cut(s) 202, 857
BstKTI GATC 4 cut(s) 120, 1015, 1150, 1174
BstMAI GTCTC 3 cut(s) 528, 554, 1227
BstMBI GATC 4 cut(s) 117, 1012, 1147, 1171
BstMCI CGRYCG 2 cut(s) 195, 343
BstMWI GCNNNNNNNGC 5 cut(s) 197, 206, 232, 992, 1001
BstNI CCWGG 3 cut(s) 215, 557, 1210
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 7 cut(s) 213, 345, 346, 373, 555, 565, 1208
BstSFI CTRYAG 2 cut(s) 595, 984
BstSLI GKGCMC 2 cut(s) 514, 1196
BstUI CGCG 3 cut(s) 202, 413, 1231
BstV1I GCAGC 6 cut(s) 174, 674, 793, 970, 998, 1094
BstV2I GAAGAC 3 cut(s) 579, 611, 645
BstX2I RGATCY 2 cut(s) 1012, 1171
BstYI RGATCY 2 cut(s) 1012, 1171
BstZI CGGCCG 2 cut(s) 192, 340
BsuI GTATCC 2 cut(s) 599, 902
BtsCI GGATG 2 cut(s) 763, 1192
BtsI GCAGTG 3 cut(s) 63, 741, 1062
BtsIMutI CAGTG 5 cut(s) 63, 268, 308, 741, 1062
BveI ACCTGC 1 cut(s) 860
Cac8I GCNNGC 5 cut(s) 145, 160, 281, 1157, 1217
CaiI CAGNNNCTG 2 cut(s) 226, 1215
CfoI GCGC 2 cut(s) 202, 857
Cfr13I GGNCC 6 cut(s) 211, 351, 510, 511, 697, 1178
Cfr9I CCCGGG 1 cut(s) 346
CseI GACGC 2 cut(s) 402, 1115
CsiI ACCWGGT 1 cut(s) 213
Csp6I GTAC 2 cut(s) 478, 943
CviAII CATG 2 cut(s) 666, 817
CviQI GTAC 2 cut(s) 478, 943
DdeI CTNAG 5 cut(s) 121, 393, 462, 1034, 1077
DpnI GATC 4 cut(s) 119, 1014, 1149, 1173
DpnII GATC 4 cut(s) 117, 1012, 1147, 1171
DraIII CACNNNGTG 1 cut(s) 328
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 3 cut(s) 130, 192, 340
EagI CGGCCG 2 cut(s) 192, 340
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
EciI GGCGGA 1 cut(s) 224
EclXI CGGCCG 2 cut(s) 192, 340
Eco147I AGGCCT 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 514
Eco31I GGTCTC 1 cut(s) 528
Eco47I GGWCC 3 cut(s) 211, 697, 1178
Eco52I CGGCCG 2 cut(s) 192, 340
Eco57I CTGAAG 1 cut(s) 605
Eco72I CACGTG 1 cut(s) 1222
Eco88I CYCGRG 2 cut(s) 346, 538
EcoO109I RGGNCCY 1 cut(s) 511
EcoRII CCWGG 3 cut(s) 213, 555, 1208
EcoT38I GRGCYC 1 cut(s) 514
FaeI CATG 2 cut(s) 669, 820
FatI CATG 2 cut(s) 665, 816
FauI CCCGC 1 cut(s) 195
FauNDI CATATG 1 cut(s) 1165
FokI GGATG 2 cut(s) 770, 1199
FriOI GRGCYC 1 cut(s) 514
FspBI CTAG 3 cut(s) 810, 1016, 1130
FspI TGCGCA 1 cut(s) 856
GlaI GCGC 2 cut(s) 201, 856
GsuI CTGGAG 1 cut(s) 1182
HapII CCGG 4 cut(s) 129, 347, 374, 566
HgaI GACGC 2 cut(s) 402, 1115
HhaI GCGC 2 cut(s) 202, 857
Hin1II CATG 2 cut(s) 669, 820
Hin6I GCGC 2 cut(s) 200, 855
HinP1I GCGC 2 cut(s) 200, 855
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 2 cut(s) 562, 929
HpaII CCGG 4 cut(s) 129, 347, 374, 566
HphI GGTGA 2 cut(s) 910, 1157
Hpy166II GTNNAC 5 cut(s) 259, 459, 674, 943, 1194
Hpy188I TCNGA 5 cut(s) 33, 313, 533, 782, 887
Hpy188III TCNNGA 5 cut(s) 586, 603, 794, 1016, 1199
Hpy8I GTNNAC 5 cut(s) 259, 459, 674, 943, 1194
Hpy99I CGWCG 2 cut(s) 155, 418
HpyAV CCTTC 5 cut(s) 58, 441, 736, 878, 1043
HpyCH4III ACNGT 5 cut(s) 99, 155, 263, 599, 1022
HpyCH4IV ACGT 2 cut(s) 609, 1221
HpyCH4V TGCA 7 cut(s) 220, 235, 266, 662, 734, 986, 1194
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 206, 232, 992, 1001
HpyF3I CTNAG 5 cut(s) 121, 393, 462, 1034, 1077
HpySE526I ACGT 2 cut(s) 609, 1221
Hsp92II CATG 2 cut(s) 669, 820
HspAI GCGC 2 cut(s) 200, 855
Kzo9I GATC 4 cut(s) 117, 1012, 1147, 1171
LmnI GCTCC 3 cut(s) 377, 1052, 1212
Lsp1109I GCAGC 6 cut(s) 174, 674, 793, 970, 998, 1094
LweI GCATC 2 cut(s) 187, 1113
MabI ACCWGGT 1 cut(s) 213
MaeI CTAG 3 cut(s) 810, 1016, 1130
MaeII ACGT 2 cut(s) 609, 1221
MaeIII GTNAC 4 cut(s) 89, 590, 739, 916
MalI GATC 4 cut(s) 119, 1014, 1149, 1173
MboI GATC 4 cut(s) 117, 1012, 1147, 1171
MboII GAAGA 7 cut(s) 253, 561, 584, 611, 650, 989, 1129
MflI RGATCY 2 cut(s) 1012, 1171
MhlI GDGCHC 2 cut(s) 514, 1196
MluCI AATT 2 cut(s) 1039, 1108
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 291
MseI TTAA 3 cut(s) 522, 654, 837
MslI CAYNNNNRTG 1 cut(s) 1121
MspI CCGG 4 cut(s) 129, 347, 374, 566
MspR9I CCNGG 7 cut(s) 215, 347, 348, 375, 557, 567, 1210
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 3 cut(s) 215, 557, 1210
MvnI CGCG 3 cut(s) 202, 413, 1231
MwoI GCNNNNNNNGC 5 cut(s) 197, 206, 232, 992, 1001
NciI CCSGG 4 cut(s) 347, 348, 375, 567
NdeI CATATG 1 cut(s) 1165
NdeII GATC 4 cut(s) 117, 1012, 1147, 1171
NlaIII CATG 2 cut(s) 669, 820
NlaIV GGNNCC 4 cut(s) 157, 352, 512, 513
NmuCI GTSAC 1 cut(s) 916
NsbI TGCGCA 1 cut(s) 856
NspI RCATGY 1 cut(s) 669
PceI AGGCCT 1 cut(s) 68
PctI GAATGC 1 cut(s) 808
PfeI GAWTC 1 cut(s) 929
PflMI CCANNNNNTGG 1 cut(s) 1215
PfoI TCCNGGA 2 cut(s) 373, 565
PleI GAGTC 1 cut(s) 556
PmaCI CACGTG 1 cut(s) 1222
PmlI CACGTG 1 cut(s) 1222
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 1222
PsiI TTATAA 1 cut(s) 1073
Psp6I CCWGG 3 cut(s) 213, 555, 1208
PspCI CACGTG 1 cut(s) 1222
PspGI CCWGG 3 cut(s) 213, 555, 1208
PspN4I GGNNCC 4 cut(s) 157, 352, 512, 513
PspOMI GGGCCC 1 cut(s) 510
PspPI GGNCC 6 cut(s) 211, 351, 510, 511, 697, 1178
PsrI GAACNNNNNNTAC 2 cut(s) 583, 615
PstI CTGCAG 1 cut(s) 988
PstNI CAGNNNCTG 2 cut(s) 226, 1215
PsuI RGATCY 2 cut(s) 1012, 1171
RsaI GTAC 2 cut(s) 479, 944
RsaNI GTAC 2 cut(s) 478, 943
RseI CAYNNNNRTG 1 cut(s) 1121
SaqAI TTAA 3 cut(s) 522, 654, 837
Sau3AI GATC 4 cut(s) 117, 1012, 1147, 1171
Sau96I GGNCC 6 cut(s) 211, 351, 510, 511, 697, 1178
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 7 cut(s) 215, 347, 348, 375, 557, 567, 1210
SduI GDGCHC 2 cut(s) 514, 1196
SexAI ACCWGGT 1 cut(s) 213
SfaNI GCATC 2 cut(s) 187, 1113
SfcI CTRYAG 2 cut(s) 595, 984
SinI GGWCC 3 cut(s) 211, 697, 1178
SmaI CCCGGG 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 1121
Sse9I AATT 2 cut(s) 1039, 1108
SseBI AGGCCT 1 cut(s) 68
SsiI CCGC 8 cut(s) 147, 191, 202, 209, 343, 408, 411, 1229
SspI AATATT 1 cut(s) 359
SspMI CTAG 3 cut(s) 810, 1016, 1130
StuI AGGCCT 1 cut(s) 68
StyD4I CCNGG 7 cut(s) 213, 345, 346, 373, 555, 565, 1208
TaaI ACNGT 5 cut(s) 99, 155, 263, 599, 1022
TaiI ACGT 2 cut(s) 612, 1224
TaqI TCGA 2 cut(s) 362, 1140
TaqII GACCGA 1 cut(s) 1166
TasI AATT 2 cut(s) 1039, 1108
TatI WGTACW 2 cut(s) 477, 942
TauI GCSGC 4 cut(s) 150, 194, 345, 413
TfiI GAWTC 1 cut(s) 929
Tru1I TTAA 3 cut(s) 522, 654, 837
Tru9I TTAA 3 cut(s) 522, 654, 837
TscAI CASTG 5 cut(s) 63, 268, 308, 741, 1062
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 6 cut(s) 162, 662, 806, 983, 986, 1082
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 1 cut(s) 813
TspGWI ACGGA 2 cut(s) 339, 723
TspMI CCCGGG 1 cut(s) 346
TspRI CASTG 5 cut(s) 63, 268, 308, 741, 1062
Van91I CCANNNNNTGG 1 cut(s) 1215
VneI GTGCAC 1 cut(s) 1192
VpaK11BI GGWCC 3 cut(s) 211, 697, 1178
XbaI TCTAGA 1 cut(s) 1015
XceI RCATGY 1 cut(s) 669
XcmI CCANNNNNNNNNTGG 2 cut(s) 448, 836
XmaI CCCGGG 1 cut(s) 346
XspI CTAG 3 cut(s) 810, 1016, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.