Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003333

Physical Location & Seq

Genomic Coordinates Reverse (-)

51096122 .. 51099753

Gene Structure 3632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG376200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGCCTCCTCCTTTCTCTGTTCCTCTGTTCAGAACAGACTACTTCAATACAGAGCAGTGCCGAAGGCCTTGCTCTTGCTCTGTTTCACTCTTTGTTACATACTGTTGTTCTCTCTCTCTGTGATCTCAGTTTCCGGCCAGTCGTTTGCCTGCGGCGACGGTGCCAGCAGCTTCCCGTTCTGCGACAAGTCGTTGGCGGCCGATGCGCGGGTGGCGGACCTGGTGCAGAGGCTGACATTGCAGGAGAAGATTACATTTCTGGTGGACAGTGCAGGGAATGTGAGCAGGCTTGGAATACCCAACTACCAGTGGTGGTCGGAGGCTTTACACGGAGTGTCGTCCATCGGCCGCCCGGGGGCCAGATATTCGACTGACATTCCGGGAGCTACCAGCTTCCCTCAGCCCATTTTGACCGCCGCGTCGTTCAACAACTCACTCTACGAAGCCATTGGAAGGGTGGTGTCTACTGAGGCCAGAGCAATGTACAATATGGGATTGGCAGGATTGACATTCTGGGCCCCAAACATTAACATTTTCCGAGACCCGAGATGGGGAAGAGGCCAGGAGACTCCGGGAGAAGACCCTTTGCTCACGAGTAACTACAGTTCGGGATACGTTAGAGGTCTTCAACAAACCGATAGCGAAGACAAAAACAGGCTTAAAGTTGCAGCATGTTGTAAACATTATACAGCCTATGATTTGGACCATTGGAACGGATATGACAGAGATACCTTCAATGCAGTGGTAACAAAACAAGATATGGATGATACATTTCAACCACCATTCAGAAGTTGTGTTCTTGATGGGAATGCTGCTAGTGTCATGTGTTCATACCAACAGGTTAATGGAAAACCAACCTGCGCAGACCCAGACCTTCTTTCTGGGGTTATCCGAGGCGAATGGAAGTTGAATGGATACATAGTCACCGATTGTGATTCAATAGAGGTGTACTATGACAACCAACACTACACCAAAACACCAGAAGAAGCTGCAGCTACGGCTATATTGGCAGGAGTGGATCTAGACTGTGGATTTTTCCTAAGCAATTACACAGAAGGAGCAGTGAGAGGAGGACTTATAACTGAGGCAGCCATTGACAAGGCCATCACAAACAATTTTGGCACTTTGATGCGTCTAGGCTTCTTCGATGGTGATCCAAGCAAGCAACCATATGGAGATCTCGGTCCAAAGGATGTGTGCACTCCAGAGAACCAGGAGCTGGCACGTGAAACTGCGAGACAAGGGATAGTGTTGCTCAAGAACACTCCAGAATCACTGCCTCTGTCTCCAACAGCCATCAAATCCATGGCAGTTATAGGTCCCAATAGCAATGCCACAAACACTATGATTGGCAACTACGCAGGCACCCCTTGCAACTATACAACTCCTTTGCAAGGCCTAACAGCCGTAGTTTCCACAACTTTGGTGGCCGGGTGCGTTAATGTGGCTTGTGGCACTGCCCAGGTAGATGATGCTACCAAGTTAGCAGCCACAGCAGATGCAACTGTACTTATAGTGGGTGCAGATCTATCAATAGAGGCAGAGAGTCATGATAGAACCGACCTCTATCTTCCAGGACAGCAAACTCTTCTAATAACTGAAGTAGCGAAGGCTTCTAAAGGACCTGTAATCCTTGTCATAATGTCTGGAGGAGGGTTCGATATTACCTTTGCAAAAAATGATGATAAAATTACAAGCATTCTATGGGTTGGTTACCCCGGCGAAGCTGGTGGAGCTGCCATTGCTGATGTTATTTTTGGCTTTTATAATCCAAGTGGAAGACTACCCATGACGTGGTATCCACAAGCTTATTTAGACAAGGTCCCTATGACAAACATGAATATGAGACCTGATCCTGCCAGTGGATACCCGGGCAGGACATACCGGTTTTACACTGGTGACACAGTTTATGCATTTGGATACGGAATAAGCTATTCCACCTTCAATCACCGCCTAGTTCGAGCACCGAAGCAAGTTTCCATTCCCTTAGAGGAGGATCATGTATGCCACTCATCAAATTGCCAATCAGTTGATGTTGTAGAAGAAAGGTGTCAAAATCTAGCTTTCGATATCCATTTGGGGGTGAAAAACATGGGCAAAATGAGTGGAAGTCATACAGTCTTATTGTATTCGAGTCCTCCATCTGTGCACAATTCTCCTAAAAAGCACTTGTTGGGATTCGAGAAGGTGTTCCTTAGCTCACAGGGACAAGCATTGGTCAAGTTCAATGTGGATGTTTGCAAGCACTTGAGTGTGGTTGATGAGCGAGGAAATAGGAAAGTTGCTTTGGGAGATCATGTACTACATGTGGGAGACTTGAAACATACATTGAGTGTGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

781

Amino Acids

84.65

Weight (kDa)

5.63

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	128 - 369	2.5e-33	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	416 - 645	8.3e-50	Glycosyl hydrolase family 3 C-terminal domain
Fn3-like	PF14310	705 - 772	1.2e-10	Fibronectin type III-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09730 AT5G64570 AT5G64570 AT5G64570
fragaria_vesca	FvH4_5g30690 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710
malus_domestica	MD08G1221800.v1.1 MD15G1414100.v1.1
prunus_persica	Prupe.1G559400_v2.0.a1 Prupe.1G559400_v2.0.a1
pyrus_communis	pycom08g19240 pycom15g36840
rosa_chinensis	RchiOBHm_Chr7g0225551 RchiOBHm_Chr7g0225581
rosa_laevigata	RLG00000001804 RLG00000001806
rosa_multiflora	Rmu_co8377913.1_g000001 Rmu_sc0003876.1_g000021 Rmu_sc0006321.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233670 Rroxscaffold_3G00233690
rosa_rugosa	Rorug07G0231600 Rorug07G0231800
rosa_samantha	Rh7AG372300 Rh7AG372500 Rh7BG365400 Rh7BG365500 Rh7CG390600 Rh7CG390800 Rh7DG376200 Rh7DG376300
rosa_wichuraiana	Rw7G031750 Rw7G031760

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1079, 1767
AasI	GACNNNNNNGTC	1 cut(s)	418
Acc16I	TGCGCA	1 cut(s)	862
Acc36I	ACCTGC	1 cut(s)	866
AccB1I	GGYRCC	2 cut(s)	161, 1364
AccB7I	CCANNNNNTGG	2 cut(s)	1219, 1794
AccI	GTMKAC	1 cut(s)	464
AccII	CGCG	2 cut(s)	208, 419
AciI	CCGC	8 cut(s)	153, 197, 208, 215, 349, 414, 417, 1951
AclWI	GGATC	4 cut(s)	1026, 1148, 1847, 2004
AcoI	YGGCCR	4 cut(s)	136, 198, 346, 1428
AcuI	CTGAAG	1 cut(s)	1620
AcvI	CACGTG	1 cut(s)	1226
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	4 cut(s)	485, 950, 1509, 2301
AflIII	ACRYGT	1 cut(s)	2305
AgeI	ACCGGT	1 cut(s)	1884
AjiI	CACGTC	1 cut(s)	1794
AjnI	CCWGG	5 cut(s)	219, 561, 1212, 1461, 1573
AjuI	GAANNNNNNNTTGG	2 cut(s)	2270, 2302
AleI	CACNNNNGTG	1 cut(s)	2250
Alw21I	GWGCWC	3 cut(s)	1202, 1966, 2151
Alw26I	GTCTC	6 cut(s)	534, 560, 1231, 1290, 1840, 2307
Alw44I	GTGCAC	2 cut(s)	1198, 2147
AlwI	GGATC	4 cut(s)	1026, 1148, 1847, 2004
AlwNI	CAGNNNCTG	2 cut(s)	232, 1219
Ama87I	CYCGRG	3 cut(s)	352, 544, 1870
ApaI	GGGCCC	1 cut(s)	520
ApaLI	GTGCAC	2 cut(s)	1198, 2147
ApeKI	GCWGC	8 cut(s)	168, 668, 812, 989, 992, 1088, 1487, 1736
AsiGI	ACCGGT	1 cut(s)	1884
Asp700I	GAANNNNTTC	1 cut(s)	2189
AspLEI	GCGC	2 cut(s)	208, 863
AspS9I	GGNCC	9 cut(s)	217, 357, 516, 517, 703, 1184, 1319, 1622, 1822
AsuC2I	CCSGG	8 cut(s)	353, 354, 381, 573, 1432, 1719, 1871, 1872
AsuHPI	GGTGA	5 cut(s)	916, 1163, 1910, 1940, 2095
AvaI	CYCGRG	3 cut(s)	352, 544, 1870
AvaII	GGWCC	6 cut(s)	217, 703, 1184, 1319, 1622, 1822
BaeGI	GKGCMC	3 cut(s)	520, 1202, 2151
BanI	GGYRCC	2 cut(s)	161, 1364
BanII	GRGCYC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	592
BbrPI	CACGTG	1 cut(s)	1226
BbsI	GAAGAC	4 cut(s)	585, 617, 651, 1786
Bbv12I	GWGCWC	3 cut(s)	1202, 1966, 2151
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	8 cut(s)	180, 680, 799, 976, 1004, 1100, 1499, 1723
BccI	CCATC	7 cut(s)	350, 543, 797, 1112, 1142, 1304, 2149
BceAI	ACGGC	2 cut(s)	1014, 1391
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	5 cut(s)	221, 563, 1214, 1463, 1575
BciVI	GTATCC	5 cut(s)	605, 908, 1809, 1859, 1913
BcnI	CCSGG	8 cut(s)	353, 354, 381, 573, 1432, 1719, 1871, 1872
BcoDI	GTCTC	6 cut(s)	534, 560, 1231, 1290, 1840, 2307
BfaI	CTAG	5 cut(s)	816, 1022, 1136, 1955, 2060
BfmI	CTRYAG	2 cut(s)	601, 990
BfuAI	ACCTGC	1 cut(s)	866
BfuI	GTATCC	5 cut(s)	605, 908, 1809, 1859, 1913
BglII	AGATCT	2 cut(s)	1177, 1525
Bme18I	GGWCC	6 cut(s)	217, 703, 1184, 1319, 1622, 1822
BmeT110I	CYCGRG	3 cut(s)	352, 544, 1870
BmgBI	CACGTC	1 cut(s)	1794
BmgT120I	GGNCC	9 cut(s)	217, 357, 516, 517, 703, 1184, 1319, 1622, 1822
BmiI	GGNNCC	7 cut(s)	163, 358, 518, 519, 1321, 1366, 1824
BmsI	GCATC	4 cut(s)	193, 1119, 1462, 1489
BpiI	GAAGAC	4 cut(s)	585, 617, 651, 1786
BpmI	CTGGAG	3 cut(s)	1188, 1251, 1668
Bpu10I	CCTNAGC	3 cut(s)	399, 1040, 2195
BpuEI	CTTGAG	2 cut(s)	1241, 2269
BpuMI	CCSGG	8 cut(s)	353, 354, 381, 573, 1432, 1719, 1871, 1872
BsaAI	YACGTR	1 cut(s)	1226
BsaBI	GATNNNNATC	1 cut(s)	1152
BsaI	GGTCTC	2 cut(s)	534, 1840
BsaJI	CCNNGG	7 cut(s)	352, 353, 892, 1305, 1461, 1717, 1870
BsaWI	WCCGGW	1 cut(s)	1884
BsaXI	ACNNNNNCTCC	2 cut(s)	2283, 2313
Bse118I	RCCGGY	1 cut(s)	1884
Bse1I	ACTGG	4 cut(s)	139, 307, 1860, 1900
Bse3DI	GCAATG	4 cut(s)	236, 486, 1336, 1740
Bse8I	GATNNNNATC	1 cut(s)	1152
BseBI	CCWGG	5 cut(s)	221, 563, 1214, 1463, 1575
BseDI	CCNNGG	7 cut(s)	352, 353, 892, 1305, 1461, 1717, 1870
BseGI	GGATG	3 cut(s)	769, 1198, 2239
BseJI	GATNNNNATC	1 cut(s)	1152
BseMI	GCAATG	4 cut(s)	236, 486, 1336, 1740
BseMII	CTCAG	4 cut(s)	141, 413, 459, 1074
BseNI	ACTGG	4 cut(s)	139, 307, 1860, 1900
BseRI	GAGGAG	3 cut(s)	1083, 1665, 2006
BseSI	GKGCMC	3 cut(s)	520, 1202, 2151
BseX3I	CGGCCG	2 cut(s)	198, 346
BseXI	GCAGC	8 cut(s)	180, 680, 799, 976, 1004, 1100, 1499, 1723
BsgI	GTGCAG	3 cut(s)	245, 291, 1542
Bsh1236I	CGCG	2 cut(s)	208, 419
Bsh1285I	CGRYCG	2 cut(s)	201, 349
BshNI	GGYRCC	2 cut(s)	161, 1364
BshTI	ACCGGT	1 cut(s)	1884
BsiEI	CGRYCG	2 cut(s)	201, 349
BsiHKAI	GWGCWC	3 cut(s)	1202, 1966, 2151
BsiHKCI	CYCGRG	3 cut(s)	352, 544, 1870
BsiSI	CCGG	8 cut(s)	135, 353, 380, 572, 1431, 1719, 1871, 1885
BslFI	GGGAC	3 cut(s)	1305, 1808, 2220
BsmAI	GTCTC	6 cut(s)	534, 560, 1231, 1290, 1840, 2307
BsmFI	GGGAC	3 cut(s)	1305, 1808, 2220
BsmI	GAATGC	2 cut(s)	814, 1698
Bso31I	GGTCTC	2 cut(s)	534, 1840
BsoBI	CYCGRG	3 cut(s)	352, 544, 1870
Bsp120I	GGGCCC	1 cut(s)	516
Bsp1286I	GDGCHC	4 cut(s)	520, 1202, 1966, 2151
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	8 cut(s)	123, 1018, 1153, 1177, 1525, 1852, 1996, 2293
Bsp19I	CCATGG	1 cut(s)	1305
BspACI	CCGC	8 cut(s)	153, 197, 208, 215, 349, 414, 417, 1951
BspCNI	CTCAG	4 cut(s)	140, 412, 460, 1075
BspFNI	CGCG	2 cut(s)	208, 419
BspHI	TCATGA	1 cut(s)	1549
BspLI	GGNNCC	7 cut(s)	163, 358, 518, 519, 1321, 1366, 1824
BspMAI	CTGCAG	1 cut(s)	994
BspMI	ACCTGC	1 cut(s)	866
BspPI	GGATC	4 cut(s)	1026, 1148, 1847, 2004
BspT107I	GGYRCC	2 cut(s)	161, 1364
BspTNI	GGTCTC	2 cut(s)	534, 1840
BsrDI	GCAATG	4 cut(s)	236, 486, 1336, 1740
BsrFI	RCCGGY	1 cut(s)	1884
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	4 cut(s)	139, 307, 1860, 1900
BssAI	RCCGGY	1 cut(s)	1884
BssECI	CCNNGG	7 cut(s)	352, 353, 892, 1305, 1461, 1717, 1870
BssMI	GATC	8 cut(s)	123, 1018, 1153, 1177, 1525, 1852, 1996, 2293
BssSI	CACGAG	1 cut(s)	592
BssT1I	CCWWGG	1 cut(s)	1305
Bst2BI	CACGAG	1 cut(s)	592
Bst2UI	CCWGG	5 cut(s)	221, 563, 1214, 1463, 1575
Bst4CI	ACNGT	8 cut(s)	105, 161, 269, 605, 1028, 1507, 1906, 2119
Bst6I	CTCTTC	2 cut(s)	550, 1593
BstAPI	GCANNNNNTGC	1 cut(s)	1371
BstAUI	TGTACA	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	1226
BstC8I	GCNNGC	7 cut(s)	151, 166, 287, 1163, 1221, 1363, 2243
BstDEI	CTNAG	7 cut(s)	127, 399, 468, 1040, 1083, 1987, 2195
BstDSI	CCRYGG	1 cut(s)	1305
BstEII	GGTNACC	1 cut(s)	1712
BstENI	CCTNNNNNAGG	1 cut(s)	1392
BstF5I	GGATG	3 cut(s)	769, 1198, 2239
BstFNI	CGCG	2 cut(s)	208, 419
BstHHI	GCGC	2 cut(s)	208, 863
BstKTI	GATC	8 cut(s)	126, 1021, 1156, 1180, 1528, 1855, 1999, 2296
BstMAI	GTCTC	6 cut(s)	534, 560, 1231, 1290, 1840, 2307
BstMBI	GATC	8 cut(s)	123, 1018, 1153, 1177, 1525, 1852, 1996, 2293
BstMCI	CGRYCG	2 cut(s)	201, 349
BstMWI	GCNNNNNNNGC	9 cut(s)	203, 212, 238, 998, 1007, 1371, 1493, 1733, 1742
BstNI	CCWGG	5 cut(s)	221, 563, 1214, 1463, 1575
BstNSI	RCATGY	2 cut(s)	675, 2309
BstPI	GGTNACC	1 cut(s)	1712
BstSFI	CTRYAG	2 cut(s)	601, 990
BstSLI	GKGCMC	3 cut(s)	520, 1202, 2151
BstUI	CGCG	2 cut(s)	208, 419
BstV1I	GCAGC	8 cut(s)	180, 680, 799, 976, 1004, 1100, 1499, 1723
BstV2I	GAAGAC	4 cut(s)	585, 617, 651, 1786
BstX2I	RGATCY	3 cut(s)	1018, 1177, 1525
BstXI	CCANNNNNNTGG	1 cut(s)	1423
BstYI	RGATCY	3 cut(s)	1018, 1177, 1525
BstZI	CGGCCG	2 cut(s)	198, 346
BsuI	GTATCC	5 cut(s)	605, 908, 1809, 1859, 1913
BtgI	CCRYGG	1 cut(s)	1305
BtrI	CACGTC	1 cut(s)	1794
BtsCI	GGATG	3 cut(s)	769, 1198, 2239
BtsI	GCAGTG	5 cut(s)	63, 747, 1068, 1274, 1455
BtsIMutI	CAGTG	9 cut(s)	63, 274, 314, 747, 1068, 1274, 1455, 1867, 1893
BveI	ACCTGC	1 cut(s)	866
Cac8I	GCNNGC	7 cut(s)	151, 166, 287, 1163, 1221, 1363, 2243
CaiI	CAGNNNCTG	2 cut(s)	232, 1219
CciI	TCATGA	1 cut(s)	1549
CfoI	GCGC	2 cut(s)	208, 863
Cfr10I	RCCGGY	1 cut(s)	1884
Cfr13I	GGNCC	9 cut(s)	217, 357, 516, 517, 703, 1184, 1319, 1622, 1822
Cfr9I	CCCGGG	2 cut(s)	352, 1870
CseI	GACGC	2 cut(s)	408, 1121
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	4 cut(s)	484, 949, 1508, 2300
CspAI	ACCGGT	1 cut(s)	1884
CspCI	CAANNNNNGTGG	4 cut(s)	1407, 1442, 2086, 2121
CviQI	GTAC	4 cut(s)	484, 949, 1508, 2300
DdeI	CTNAG	7 cut(s)	127, 399, 468, 1040, 1083, 1987, 2195
DpnI	GATC	8 cut(s)	125, 1020, 1155, 1179, 1527, 1854, 1998, 2295
DpnII	GATC	8 cut(s)	123, 1018, 1153, 1177, 1525, 1852, 1996, 2293
DraIII	CACNNNGTG	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	4 cut(s)	136, 198, 346, 1428
EagI	CGGCCG	2 cut(s)	198, 346
Eam1104I	CTCTTC	2 cut(s)	550, 1593
EarI	CTCTTC	2 cut(s)	550, 1593
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	2 cut(s)	198, 346
Eco130I	CCWWGG	1 cut(s)	1305
Eco147I	AGGCCT	2 cut(s)	68, 1398
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	2 cut(s)	534, 1840
Eco32I	GATATC	1 cut(s)	2071
Eco47I	GGWCC	6 cut(s)	217, 703, 1184, 1319, 1622, 1822
Eco52I	CGGCCG	2 cut(s)	198, 346
Eco57I	CTGAAG	1 cut(s)	1620
Eco72I	CACGTG	1 cut(s)	1226
Eco88I	CYCGRG	3 cut(s)	352, 544, 1870
Eco91I	GGTNACC	1 cut(s)	1712
EcoNI	CCTNNNNNAGG	1 cut(s)	1392
EcoO109I	RGGNCCY	4 cut(s)	517, 1319, 1622, 1822
EcoO65I	GGTNACC	1 cut(s)	1712
EcoRII	CCWGG	5 cut(s)	219, 561, 1212, 1461, 1573
EcoRV	GATATC	1 cut(s)	2071
EcoT14I	CCWWGG	1 cut(s)	1305
EcoT22I	ATGCAT	1 cut(s)	1915
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	1305
FaqI	GGGAC	3 cut(s)	1305, 1808, 2220
FauI	CCCGC	1 cut(s)	201
FauNDI	CATATG	1 cut(s)	1171
FblI	GTMKAC	1 cut(s)	464
FokI	GGATG	3 cut(s)	776, 1205, 2246
FriOI	GRGCYC	1 cut(s)	520
FspBI	CTAG	5 cut(s)	816, 1022, 1136, 1955, 2060
FspI	TGCGCA	1 cut(s)	862
GlaI	GCGC	2 cut(s)	207, 862
GsuI	CTGGAG	3 cut(s)	1188, 1251, 1668
HapII	CCGG	8 cut(s)	135, 353, 380, 572, 1431, 1719, 1871, 1885
HgaI	GACGC	2 cut(s)	408, 1121
HhaI	GCGC	2 cut(s)	208, 863
Hin6I	GCGC	2 cut(s)	206, 861
HinP1I	GCGC	2 cut(s)	206, 861
HindIII	AAGCTT	1 cut(s)	1806
HinfI	GANTC	6 cut(s)	568, 935, 1271, 1546, 2134, 2178
HpaII	CCGG	8 cut(s)	135, 353, 380, 572, 1431, 1719, 1871, 1885
HphI	GGTGA	5 cut(s)	916, 1163, 1910, 1940, 2095
Hpy166II	GTNNAC	6 cut(s)	265, 465, 680, 949, 1200, 2149
Hpy188I	TCNGA	5 cut(s)	33, 319, 539, 788, 893
Hpy8I	GTNNAC	6 cut(s)	265, 465, 680, 949, 1200, 2149
Hpy99I	CGWCG	2 cut(s)	161, 424
HpyAV	CCTTC	8 cut(s)	58, 447, 742, 884, 1049, 1603, 1951, 2179
HpyCH4III	ACNGT	8 cut(s)	105, 161, 269, 605, 1028, 1507, 1906, 2119
HpyCH4IV	ACGT	3 cut(s)	615, 1225, 1793
HpyF10VI	GCNNNNNNNGC	9 cut(s)	203, 212, 238, 998, 1007, 1371, 1493, 1733, 1742
HpyF3I	CTNAG	7 cut(s)	127, 399, 468, 1040, 1083, 1987, 2195
HpySE526I	ACGT	3 cut(s)	615, 1225, 1793
HspAI	GCGC	2 cut(s)	206, 861
Kzo9I	GATC	8 cut(s)	123, 1018, 1153, 1177, 1525, 1852, 1996, 2293
LmnI	GCTCC	4 cut(s)	383, 1058, 1216, 1733
Lsp1109I	GCAGC	8 cut(s)	180, 680, 799, 976, 1004, 1100, 1499, 1723
LweI	GCATC	4 cut(s)	193, 1119, 1462, 1489
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	5 cut(s)	816, 1022, 1136, 1955, 2060
MaeII	ACGT	3 cut(s)	615, 1225, 1793
MaeIII	GTNAC	6 cut(s)	95, 596, 745, 922, 1712, 1898
MalI	GATC	8 cut(s)	125, 1020, 1155, 1179, 1527, 1854, 1998, 2295
MboI	GATC	8 cut(s)	123, 1018, 1153, 1177, 1525, 1852, 1996, 2293
MflI	RGATCY	3 cut(s)	1018, 1177, 1525
MhlI	GDGCHC	4 cut(s)	520, 1202, 1966, 2151
MluCI	AATT	5 cut(s)	1045, 1114, 1689, 2017, 2152
MlyI	GAGTC	3 cut(s)	562, 1555, 2143
MmeI	TCCRAC	2 cut(s)	297, 1313
Mph1103I	ATGCAT	1 cut(s)	1915
MroXI	GAANNNNTTC	1 cut(s)	2189
MseI	TTAA	4 cut(s)	528, 660, 843, 1440
MslI	CAYNNNNRTG	3 cut(s)	1127, 1841, 2250
MspI	CCGG	8 cut(s)	135, 353, 380, 572, 1431, 1719, 1871, 1885
Mva1269I	GAATGC	2 cut(s)	814, 1698
MvaI	CCWGG	5 cut(s)	221, 563, 1214, 1463, 1575
MvnI	CGCG	2 cut(s)	208, 419
MwoI	GCNNNNNNNGC	9 cut(s)	203, 212, 238, 998, 1007, 1371, 1493, 1733, 1742
NciI	CCSGG	8 cut(s)	353, 354, 381, 573, 1432, 1719, 1871, 1872
NcoI	CCATGG	1 cut(s)	1305
NdeI	CATATG	1 cut(s)	1171
NdeII	GATC	8 cut(s)	123, 1018, 1153, 1177, 1525, 1852, 1996, 2293
NlaIV	GGNNCC	7 cut(s)	163, 358, 518, 519, 1321, 1366, 1824
NmuCI	GTSAC	2 cut(s)	922, 1898
NsbI	TGCGCA	1 cut(s)	862
NsiI	ATGCAT	1 cut(s)	1915
NspI	RCATGY	2 cut(s)	675, 2309
OliI	CACNNNNGTG	1 cut(s)	2250
PagI	TCATGA	1 cut(s)	1549
PceI	AGGCCT	2 cut(s)	68, 1398
PciI	ACATGT	1 cut(s)	2305
PctI	GAATGC	2 cut(s)	814, 1698
PdmI	GAANNNNTTC	1 cut(s)	2189
PfeI	GAWTC	3 cut(s)	935, 1271, 2178
PflFI	GACNNNGTC	1 cut(s)	1820
PflMI	CCANNNNNTGG	2 cut(s)	1219, 1794
PfoI	TCCNGGA	3 cut(s)	379, 571, 1573
PinAI	ACCGGT	1 cut(s)	1884
PleI	GAGTC	3 cut(s)	562, 1554, 2142
PmaCI	CACGTG	1 cut(s)	1226
PmlI	CACGTG	1 cut(s)	1226
PpsI	GAGTC	3 cut(s)	562, 1554, 2142
Ppu21I	YACGTR	1 cut(s)	1226
PpuMI	RGGWCCY	3 cut(s)	1319, 1622, 1822
PscI	ACATGT	1 cut(s)	2305
PsiI	TTATAA	2 cut(s)	1079, 1767
Psp5II	RGGWCCY	3 cut(s)	1319, 1622, 1822
Psp6I	CCWGG	5 cut(s)	219, 561, 1212, 1461, 1573
PspCI	CACGTG	1 cut(s)	1226
PspEI	GGTNACC	1 cut(s)	1712
PspGI	CCWGG	5 cut(s)	219, 561, 1212, 1461, 1573
PspN4I	GGNNCC	7 cut(s)	163, 358, 518, 519, 1321, 1366, 1824
PspOMI	GGGCCC	1 cut(s)	516
PspPI	GGNCC	9 cut(s)	217, 357, 516, 517, 703, 1184, 1319, 1622, 1822
PspPPI	RGGWCCY	3 cut(s)	1319, 1622, 1822
PsrI	GAACNNNNNNTAC	2 cut(s)	589, 621
PstI	CTGCAG	1 cut(s)	994
PstNI	CAGNNNCTG	2 cut(s)	232, 1219
PsuI	RGATCY	3 cut(s)	1018, 1177, 1525
PsyI	GACNNNGTC	1 cut(s)	1820
RsaI	GTAC	4 cut(s)	485, 950, 1509, 2301
RsaNI	GTAC	4 cut(s)	484, 949, 1508, 2300
RseI	CAYNNNNRTG	3 cut(s)	1127, 1841, 2250
SaqAI	TTAA	4 cut(s)	528, 660, 843, 1440
Sau3AI	GATC	8 cut(s)	123, 1018, 1153, 1177, 1525, 1852, 1996, 2293
Sau96I	GGNCC	9 cut(s)	217, 357, 516, 517, 703, 1184, 1319, 1622, 1822
SchI	GAGTC	3 cut(s)	562, 1555, 2143
SduI	GDGCHC	4 cut(s)	520, 1202, 1966, 2151
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	4 cut(s)	193, 1119, 1462, 1489
SfcI	CTRYAG	2 cut(s)	601, 990
SinI	GGWCC	6 cut(s)	217, 703, 1184, 1319, 1622, 1822
SmaI	CCCGGG	2 cut(s)	354, 1872
SmiMI	CAYNNNNRTG	3 cut(s)	1127, 1841, 2250
SmlI	CTYRAG	2 cut(s)	1256, 2248
SmoI	CTYRAG	2 cut(s)	1256, 2248
Sse9I	AATT	5 cut(s)	1045, 1114, 1689, 2017, 2152
SseBI	AGGCCT	2 cut(s)	68, 1398
SsiI	CCGC	8 cut(s)	153, 197, 208, 215, 349, 414, 417, 1951
SspMI	CTAG	5 cut(s)	816, 1022, 1136, 1955, 2060
StuI	AGGCCT	2 cut(s)	68, 1398
StyI	CCWWGG	1 cut(s)	1305
TaaI	ACNGT	8 cut(s)	105, 161, 269, 605, 1028, 1507, 1906, 2119
TaiI	ACGT	3 cut(s)	618, 1228, 1796
TaqI	TCGA	7 cut(s)	368, 1146, 1659, 1960, 2067, 2132, 2181
TaqII	GACCGA	1 cut(s)	1172
TasI	AATT	5 cut(s)	1045, 1114, 1689, 2017, 2152
TatI	WGTACW	4 cut(s)	483, 948, 1507, 2299
TauI	GCSGC	4 cut(s)	156, 200, 351, 419
TfiI	GAWTC	3 cut(s)	935, 1271, 2178
Tru1I	TTAA	4 cut(s)	528, 660, 843, 1440
Tru9I	TTAA	4 cut(s)	528, 660, 843, 1440
TscAI	CASTG	9 cut(s)	63, 274, 314, 747, 1068, 1281, 1462, 1867, 1900
TseFI	GTSAC	2 cut(s)	922, 1898
TseI	GCWGC	8 cut(s)	168, 668, 812, 989, 992, 1088, 1487, 1736
Tsp45I	GTSAC	2 cut(s)	922, 1898
TspDTI	ATGAA	2 cut(s)	819, 1853
TspGWI	ACGGA	3 cut(s)	345, 729, 1938
TspMI	CCCGGG	2 cut(s)	352, 1870
TspRI	CASTG	9 cut(s)	63, 274, 314, 747, 1068, 1281, 1462, 1867, 1900
Tth111I	GACNNNGTC	1 cut(s)	1820
Van91I	CCANNNNNTGG	2 cut(s)	1219, 1794
VneI	GTGCAC	2 cut(s)	1198, 2147
VpaK11BI	GGWCC	6 cut(s)	217, 703, 1184, 1319, 1622, 1822
XagI	CCTNNNNNAGG	1 cut(s)	1392
XbaI	TCTAGA	1 cut(s)	1021
XceI	RCATGY	2 cut(s)	675, 2309
XcmI	CCANNNNNNNNNTGG	4 cut(s)	454, 842, 1303, 1423
XmaI	CCCGGG	2 cut(s)	352, 1870
XmiI	GTMKAC	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	2189
XspI	CTAG	5 cut(s)	816, 1022, 1136, 1955, 2060
Zsp2I	ATGCAT	1 cut(s)	1915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.