Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003333

Physical Location & Seq

Genomic Coordinates Forward (+)

19873316 .. 19877357

Gene Structure 4042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGGCCTCCTCCTTTCTCTGTTCCTCTGTTCAGAACAGACTACTTCAATACAGGGCAGTGCCGAAGGCCTTGCTCTGTTTCACTCTTTGTTACATACTGTTGTTCTCTCTCTCTGTGAGCTCAGTCTCCGGCCAGTCGTTTGCCTGCGGCGACGGTGCCAGCAGCTTCCCGTTCTGCGACAAGTCGTTGGCGGCCGATGCGAGGGTGGCGGACCTGGTGCAGAGGCTGACATTGCAGGAGAAGATTACATTTCTGGTGGACAGTGCAGGGAATGTGAGCAGGCTTGGAATACCCAACTACCAGTGGTGGTCGGAGGCTTTACACGGAGTGTCGTCCATCGGCCGCCCAGGGGCCAAATATTCGACTGACATTCCGGGAGCTACCAGCTTCCCTCAGCCCATTTTGACCGCCGCGTCGTTCAACAACTCACTCTACGAAGCCATTGGAAGGGTGGTGTCAACTGAGGCCAGAGCAATGTACAATATGGGATTGGCAGGATTGACATTCTGGGCCCCAAATATTAACATTTTCCGAGACCCGAGATGGGGAAGAGGCCAAGAGACTCCGGGAGAAGACCCATTGCTCACGAGTAACTACGGATCAGGATACGTTAGAGGTCTTCAACAAACCGACAGAGGAGACAAAAATAGGCTTAAAGTTGCAGCATGTTGTAAACATTATACAGCCTATGATTTGGACCATTGGAACGGATATGATAGATATACCTTCAATGCAGTGGTAACAAAACAAGATATGGATGATACATTTCAACCACCATTCAGAAGTTGTGTTCTTGATGGGAATGCTGCTAGTGTCATGTGTTCATACCAACAGGTGAATGGAAAACCAACCTGCGCAGACCCAGACCTTCTTTCTGGGGTTATCCGAGGCAAATGGAAGTTGAATGGATACATAGTCACCGATTGTGATTCAATAGAGGTGTACTACGACAACCAAAACTACACCAAGACACCAGAAGAAGCTGCAGCTACGGCTATATTGGCAGGAGTGGATCTAGACTGTGGATTTTTCCTAAGCAATTACACAGAAGGAGCAGTGAGAGGAGGACTTATAACTGAGGCAGCCATTGACAAGGCCATCACAAACAATTTTGGCACTTTGATGCGTCTAGGCTTCTTCGATGGTGATCCAAGCAAGCAACCATATGGAGATCTCGGTCCAAAGGATGTGTGCACTCCAGACAACCAGGAGCTGGCACGTGAAACCGCGAGACAAGGGATAGTGTTGCTCAAGAACACTCCAGGATCACTGCCTCTGTCTCCAACAGCCATCAAATCCTTGGCAGTTATAGGTCCCAATAGCAATGCCACAGGCACTATGATCGGTAACTACGCAGGCACCCCTTGCAACTATACAACTCCTTTGCAAGGCCTAACAGCCGTAGTTTCCACAACTTTGGTGGCCGGGTGTGTTGATGTGGCTTGTGGCACTGCCCAGGTAGATGATGCTACCAAGTTAGTAGCCACAGCAGATGCAACTGTACTTATAGTGGGTGCAGATCTATCAATAGAGGCAGAGAGTCATGATAGAACCGACCTCTATCTTCCAGGACAGCAAACTCTTCTAATAACTGAAGTAGCGAAGGCTTCTAAAGGACCTGTAATCCTTGTCATAATGTCTGGAGGAGGGTTCGATATTACCTTTGCAAAAAATGATGATAAAATTACAAGCATTCTATGGGTTGGTTACCCCGGCGAAGCTGGTGGAGCTGCCATTGCTGACGTTATTTTTGGCTTTTATAATCCAAGTGGAAAACTACCCATGACGTGGTATCCACAATCTTATGTAGACAAGGTCCCCATGACAAACATGAATATGAGACCTGATCCTGCCAGTGGATACCCGGGCAGGACATACCGGTTTTACACTGGTGACACGGTTTATGCATTTGGATACGGAGTAAGCTACTCCACCTTCAATCACCGCCTAGTTCGAGCTCCGAAACAAGTTTCCATTCCCTTGGAGGAGGATCATGTATGCCACTCATCAAGTTGCCAATCACTTGATGTTGTAGAAGAAAGGTGTCAAAATCTAGCTTTCGATATCCATTTGGGGGTGAAAAACTTGGGCAAAATGAGTGGAAGTCATACAGTCTTACTGTATTCGAGTCCTCCATCTGTGCACAACGCGCCTAAAAAGCACTTGTTGGGATTCGAGAAGGTTTTCCTTAGCTCTCAGGGAGAAGCATTGGTCAAGTTCAATGTGGATGTTTGCAAGCACTTGAGTGTCGTTGATGAGCGAGGAAACAGGAAAACTGCTTTGGGAGATCATGTACTACATGTGGGAGACTTGAAACAGACATTGAGTGTGAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0030312 GO:0031221 GO:0031222 GO:0043170 GO:0043207 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0044464 GO:0045087 GO:0045491 GO:0045493 GO:0046556 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071704 GO:0071944 GO:0097599 GO:0098542 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

779

Amino Acids

84.17

Weight (kDa)

5.82

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	126 - 367	7.2e-34	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	414 - 643	1.9e-49	Glycosyl hydrolase family 3 C-terminal domain
Fn3-like	PF14310	703 - 770	6.2e-10	Fibronectin type III-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09730 AT5G64570 AT5G64570 AT5G64570
fragaria_vesca	FvH4_5g30690 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710 FvH4_5g30710
malus_domestica	MD08G1221800.v1.1 MD15G1414100.v1.1
prunus_persica	Prupe.1G559400_v2.0.a1 Prupe.1G559400_v2.0.a1
pyrus_communis	pycom08g19240 pycom15g36840
rosa_chinensis	RchiOBHm_Chr7g0225551 RchiOBHm_Chr7g0225581
rosa_laevigata	RLG00000001804 RLG00000001806
rosa_multiflora	Rmu_co8377913.1_g000001 Rmu_sc0003876.1_g000021 Rmu_sc0006321.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233670 Rroxscaffold_3G00233690
rosa_rugosa	Rorug07G0231600 Rorug07G0231800
rosa_samantha	Rh7AG372300 Rh7AG372500 Rh7BG365400 Rh7BG365500 Rh7CG390600 Rh7CG390800 Rh7DG376200 Rh7DG376300
rosa_wichuraiana	Rw7G031750 Rw7G031760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1073, 1761
AasI	GACNNNNNNGTC	1 cut(s)	412
Acc16I	TGCGCA	1 cut(s)	856
Acc36I	ACCTGC	1 cut(s)	860
AccB1I	GGYRCC	2 cut(s)	155, 1358
AccB7I	CCANNNNNTGG	2 cut(s)	1213, 1788
AccI	GTMKAC	1 cut(s)	1809
AccII	CGCG	3 cut(s)	413, 1229, 2150
AciI	CCGC	8 cut(s)	147, 191, 209, 343, 408, 411, 1227, 1945
AclWI	GGATC	6 cut(s)	607, 1020, 1142, 1273, 1841, 1998
AcoI	YGGCCR	4 cut(s)	130, 192, 340, 1422
AcuI	CTGAAG	1 cut(s)	1614
AcvI	CACGTG	1 cut(s)	1220
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	4 cut(s)	479, 944, 1503, 2295
AflIII	ACRYGT	1 cut(s)	2299
AgeI	ACCGGT	1 cut(s)	1878
AjiI	CACGTC	1 cut(s)	1788
AjnI	CCWGG	6 cut(s)	213, 346, 1206, 1261, 1455, 1567
AjuI	GAANNNNNNNTTGG	2 cut(s)	2264, 2296
AleI	CACNNNNGTG	1 cut(s)	2244
Alw21I	GWGCWC	4 cut(s)	122, 1196, 1960, 2145
Alw26I	GTCTC	8 cut(s)	130, 528, 554, 633, 1225, 1284, 1834, 2301
Alw44I	GTGCAC	2 cut(s)	1192, 2141
AlwI	GGATC	6 cut(s)	607, 1020, 1142, 1273, 1841, 1998
AlwNI	CAGNNNCTG	2 cut(s)	226, 1213
Ama87I	CYCGRG	2 cut(s)	538, 1864
ApaI	GGGCCC	1 cut(s)	514
ApaLI	GTGCAC	2 cut(s)	1192, 2141
ApeKI	GCWGC	7 cut(s)	162, 662, 806, 983, 986, 1082, 1730
ArsI	GACNNNNNNTTYG	2 cut(s)	1733, 1765
AsiGI	ACCGGT	1 cut(s)	1878
Asp700I	GAANNNNTTC	1 cut(s)	2183
AspLEI	GCGC	2 cut(s)	857, 2152
AspS9I	GGNCC	9 cut(s)	211, 351, 510, 511, 697, 1178, 1313, 1616, 1816
AsuC2I	CCSGG	6 cut(s)	375, 567, 1426, 1713, 1865, 1866
AsuHPI	GGTGA	6 cut(s)	847, 910, 1157, 1904, 1934, 2089
AvaI	CYCGRG	2 cut(s)	538, 1864
AvaII	GGWCC	6 cut(s)	211, 697, 1178, 1313, 1616, 1816
BaeGI	GKGCMC	3 cut(s)	514, 1196, 2145
BanI	GGYRCC	2 cut(s)	155, 1358
BanII	GRGCYC	3 cut(s)	122, 514, 1960
BauI	CACGAG	1 cut(s)	586
BbrPI	CACGTG	1 cut(s)	1220
BbsI	GAAGAC	2 cut(s)	579, 611
Bbv12I	GWGCWC	4 cut(s)	122, 1196, 1960, 2145
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	7 cut(s)	174, 674, 793, 970, 998, 1094, 1717
BccI	CCATC	7 cut(s)	344, 537, 791, 1106, 1136, 1298, 2143
BceAI	ACGGC	2 cut(s)	1008, 1385
BcgI	CGANNNNNNTGC	4 cut(s)	52, 86, 1324, 1358
BciT130I	CCWGG	6 cut(s)	215, 348, 1208, 1263, 1457, 1569
BciVI	GTATCC	5 cut(s)	599, 902, 1803, 1853, 1907
BcnI	CCSGG	6 cut(s)	375, 567, 1426, 1713, 1865, 1866
BcoDI	GTCTC	8 cut(s)	130, 528, 554, 633, 1225, 1284, 1834, 2301
BfaI	CTAG	5 cut(s)	810, 1016, 1130, 1949, 2054
BfmI	CTRYAG	1 cut(s)	984
BfuAI	ACCTGC	1 cut(s)	860
BfuI	GTATCC	5 cut(s)	599, 902, 1803, 1853, 1907
BglII	AGATCT	2 cut(s)	1171, 1519
Bme18I	GGWCC	6 cut(s)	211, 697, 1178, 1313, 1616, 1816
BmeT110I	CYCGRG	2 cut(s)	538, 1864
BmgBI	CACGTC	1 cut(s)	1788
BmgT120I	GGNCC	9 cut(s)	211, 351, 510, 511, 697, 1178, 1313, 1616, 1816
BmiI	GGNNCC	7 cut(s)	157, 352, 512, 513, 1315, 1360, 1818
BmsI	GCATC	4 cut(s)	187, 1113, 1456, 1483
BpiI	GAAGAC	2 cut(s)	579, 611
BpmI	CTGGAG	3 cut(s)	1182, 1245, 1662
Bpu10I	CCTNAGC	3 cut(s)	393, 1034, 2189
BpuEI	CTTGAG	2 cut(s)	1235, 2263
BpuMI	CCSGG	6 cut(s)	375, 567, 1426, 1713, 1865, 1866
BsaAI	YACGTR	1 cut(s)	1220
BsaBI	GATNNNNATC	1 cut(s)	1146
BsaI	GGTCTC	2 cut(s)	528, 1834
BsaJI	CCNNGG	8 cut(s)	346, 347, 886, 1299, 1455, 1711, 1864, 1980
BsaWI	WCCGGW	1 cut(s)	1878
BsaXI	ACNNNNNCTCC	2 cut(s)	2277, 2307
Bse118I	RCCGGY	1 cut(s)	1878
Bse1I	ACTGG	4 cut(s)	133, 301, 1854, 1894
Bse3DI	GCAATG	5 cut(s)	230, 480, 578, 1330, 1734
Bse8I	GATNNNNATC	1 cut(s)	1146
BseBI	CCWGG	6 cut(s)	215, 348, 1208, 1263, 1457, 1569
BseDI	CCNNGG	8 cut(s)	346, 347, 886, 1299, 1455, 1711, 1864, 1980
BseGI	GGATG	3 cut(s)	763, 1192, 2233
BseJI	GATNNNNATC	1 cut(s)	1146
BseMI	GCAATG	5 cut(s)	230, 480, 578, 1330, 1734
BseMII	CTCAG	5 cut(s)	135, 407, 453, 1068, 2210
BseNI	ACTGG	4 cut(s)	133, 301, 1854, 1894
BseRI	GAGGAG	4 cut(s)	651, 1077, 1659, 2000
BseSI	GKGCMC	3 cut(s)	514, 1196, 2145
BseX3I	CGGCCG	2 cut(s)	192, 340
BseXI	GCAGC	7 cut(s)	174, 674, 793, 970, 998, 1094, 1717
BsgI	GTGCAG	3 cut(s)	239, 285, 1536
Bsh1236I	CGCG	3 cut(s)	413, 1229, 2150
Bsh1285I	CGRYCG	2 cut(s)	195, 343
BshNI	GGYRCC	2 cut(s)	155, 1358
BshTI	ACCGGT	1 cut(s)	1878
BsiEI	CGRYCG	2 cut(s)	195, 343
BsiHKAI	GWGCWC	4 cut(s)	122, 1196, 1960, 2145
BsiHKCI	CYCGRG	2 cut(s)	538, 1864
BsiSI	CCGG	7 cut(s)	129, 374, 566, 1425, 1713, 1865, 1879
BslFI	GGGAC	2 cut(s)	1299, 1802
BsmAI	GTCTC	8 cut(s)	130, 528, 554, 633, 1225, 1284, 1834, 2301
BsmFI	GGGAC	2 cut(s)	1299, 1802
BsmI	GAATGC	2 cut(s)	808, 1692
Bso31I	GGTCTC	2 cut(s)	528, 1834
BsoBI	CYCGRG	2 cut(s)	538, 1864
Bsp120I	GGGCCC	1 cut(s)	510
Bsp1286I	GDGCHC	5 cut(s)	122, 514, 1196, 1960, 2145
Bsp1407I	TGTACA	1 cut(s)	477
BspACI	CCGC	8 cut(s)	147, 191, 209, 343, 408, 411, 1227, 1945
BspCNI	CTCAG	5 cut(s)	134, 406, 454, 1069, 2209
BspFNI	CGCG	3 cut(s)	413, 1229, 2150
BspHI	TCATGA	1 cut(s)	1543
BspLI	GGNNCC	7 cut(s)	157, 352, 512, 513, 1315, 1360, 1818
BspMAI	CTGCAG	1 cut(s)	988
BspMI	ACCTGC	1 cut(s)	860
BspPI	GGATC	6 cut(s)	607, 1020, 1142, 1273, 1841, 1998
BspT107I	GGYRCC	2 cut(s)	155, 1358
BspTNI	GGTCTC	2 cut(s)	528, 1834
BsrDI	GCAATG	5 cut(s)	230, 480, 578, 1330, 1734
BsrFI	RCCGGY	1 cut(s)	1878
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	4 cut(s)	133, 301, 1854, 1894
BssAI	RCCGGY	1 cut(s)	1878
BssECI	CCNNGG	8 cut(s)	346, 347, 886, 1299, 1455, 1711, 1864, 1980
BssSI	CACGAG	1 cut(s)	586
BssT1I	CCWWGG	2 cut(s)	1299, 1980
Bst2BI	CACGAG	1 cut(s)	586
Bst2UI	CCWGG	6 cut(s)	215, 348, 1208, 1263, 1457, 1569
Bst4CI	ACNGT	8 cut(s)	99, 155, 263, 1022, 1501, 1900, 2113, 2121
Bst6I	CTCTTC	2 cut(s)	544, 1587
BstAPI	GCANNNNNTGC	1 cut(s)	1365
BstAUI	TGTACA	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	1220
BstC8I	GCNNGC	7 cut(s)	145, 160, 281, 1157, 1215, 1357, 2237
BstDEI	CTNAG	7 cut(s)	121, 393, 462, 1034, 1077, 2189, 2196
BstEII	GGTNACC	1 cut(s)	1706
BstENI	CCTNNNNNAGG	1 cut(s)	1386
BstF5I	GGATG	3 cut(s)	763, 1192, 2233
BstFNI	CGCG	3 cut(s)	413, 1229, 2150
BstHHI	GCGC	2 cut(s)	857, 2152
BstMAI	GTCTC	8 cut(s)	130, 528, 554, 633, 1225, 1284, 1834, 2301
BstMCI	CGRYCG	2 cut(s)	195, 343
BstNI	CCWGG	6 cut(s)	215, 348, 1208, 1263, 1457, 1569
BstNSI	RCATGY	2 cut(s)	669, 2303
BstPI	GGTNACC	1 cut(s)	1706
BstSFI	CTRYAG	1 cut(s)	984
BstSLI	GKGCMC	3 cut(s)	514, 1196, 2145
BstUI	CGCG	3 cut(s)	413, 1229, 2150
BstV1I	GCAGC	7 cut(s)	174, 674, 793, 970, 998, 1094, 1717
BstV2I	GAAGAC	2 cut(s)	579, 611
BstX2I	RGATCY	3 cut(s)	1012, 1171, 1519
BstXI	CCANNNNNNTGG	2 cut(s)	1417, 1981
BstYI	RGATCY	3 cut(s)	1012, 1171, 1519
BstZI	CGGCCG	2 cut(s)	192, 340
BsuI	GTATCC	5 cut(s)	599, 902, 1803, 1853, 1907
BtrI	CACGTC	1 cut(s)	1788
BtsCI	GGATG	3 cut(s)	763, 1192, 2233
BtsI	GCAGTG	5 cut(s)	63, 741, 1062, 1268, 1449
BtsIMutI	CAGTG	9 cut(s)	63, 268, 308, 741, 1062, 1268, 1449, 1861, 1887
BveI	ACCTGC	1 cut(s)	860
Cac8I	GCNNGC	7 cut(s)	145, 160, 281, 1157, 1215, 1357, 2237
CaiI	CAGNNNCTG	2 cut(s)	226, 1213
CciI	TCATGA	1 cut(s)	1543
CfoI	GCGC	2 cut(s)	857, 2152
Cfr10I	RCCGGY	1 cut(s)	1878
Cfr13I	GGNCC	9 cut(s)	211, 351, 510, 511, 697, 1178, 1313, 1616, 1816
Cfr9I	CCCGGG	1 cut(s)	1864
CseI	GACGC	2 cut(s)	402, 1115
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	4 cut(s)	478, 943, 1502, 2294
CspAI	ACCGGT	1 cut(s)	1878
CspCI	CAANNNNNGTGG	4 cut(s)	1401, 1436, 2080, 2115
CviAII	CATG	9 cut(s)	666, 817, 1544, 1783, 1822, 1831, 1994, 2291, 2300
CviQI	GTAC	4 cut(s)	478, 943, 1502, 2294
DdeI	CTNAG	7 cut(s)	121, 393, 462, 1034, 1077, 2189, 2196
DraIII	CACNNNGTG	1 cut(s)	328
DrdI	GACNNNNNNGTC	1 cut(s)	412
DseDI	GACNNNNNNGTC	1 cut(s)	412
EaeI	YGGCCR	4 cut(s)	130, 192, 340, 1422
EagI	CGGCCG	2 cut(s)	192, 340
Eam1104I	CTCTTC	2 cut(s)	544, 1587
EarI	CTCTTC	2 cut(s)	544, 1587
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	120, 1958
EclXI	CGGCCG	2 cut(s)	192, 340
Eco130I	CCWWGG	2 cut(s)	1299, 1980
Eco147I	AGGCCT	2 cut(s)	68, 1392
Eco24I	GRGCYC	3 cut(s)	122, 514, 1960
Eco31I	GGTCTC	2 cut(s)	528, 1834
Eco32I	GATATC	1 cut(s)	2065
Eco47I	GGWCC	6 cut(s)	211, 697, 1178, 1313, 1616, 1816
Eco52I	CGGCCG	2 cut(s)	192, 340
Eco53kI	GAGCTC	2 cut(s)	120, 1958
Eco57I	CTGAAG	1 cut(s)	1614
Eco72I	CACGTG	1 cut(s)	1220
Eco88I	CYCGRG	2 cut(s)	538, 1864
Eco91I	GGTNACC	1 cut(s)	1706
EcoICRI	GAGCTC	2 cut(s)	120, 1958
EcoNI	CCTNNNNNAGG	1 cut(s)	1386
EcoO109I	RGGNCCY	4 cut(s)	511, 1313, 1616, 1816
EcoO65I	GGTNACC	1 cut(s)	1706
EcoRII	CCWGG	6 cut(s)	213, 346, 1206, 1261, 1455, 1567
EcoRV	GATATC	1 cut(s)	2065
EcoT14I	CCWWGG	2 cut(s)	1299, 1980
EcoT22I	ATGCAT	1 cut(s)	1909
EcoT38I	GRGCYC	3 cut(s)	122, 514, 1960
ErhI	CCWWGG	2 cut(s)	1299, 1980
FaeI	CATG	9 cut(s)	669, 820, 1547, 1786, 1825, 1834, 1997, 2294, 2303
FaqI	GGGAC	2 cut(s)	1299, 1802
FatI	CATG	9 cut(s)	665, 816, 1543, 1782, 1821, 1830, 1993, 2290, 2299
FauNDI	CATATG	1 cut(s)	1165
FblI	GTMKAC	1 cut(s)	1809
FokI	GGATG	3 cut(s)	770, 1199, 2240
FriOI	GRGCYC	3 cut(s)	122, 514, 1960
FspBI	CTAG	5 cut(s)	810, 1016, 1130, 1949, 2054
FspI	TGCGCA	1 cut(s)	856
GlaI	GCGC	2 cut(s)	856, 2151
GsuI	CTGGAG	3 cut(s)	1182, 1245, 1662
HapII	CCGG	7 cut(s)	129, 374, 566, 1425, 1713, 1865, 1879
HgaI	GACGC	2 cut(s)	402, 1115
HhaI	GCGC	2 cut(s)	857, 2152
Hin1II	CATG	9 cut(s)	669, 820, 1547, 1786, 1825, 1834, 1997, 2294, 2303
Hin6I	GCGC	2 cut(s)	855, 2150
HinP1I	GCGC	2 cut(s)	855, 2150
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	5 cut(s)	562, 929, 1540, 2128, 2172
HpaII	CCGG	7 cut(s)	129, 374, 566, 1425, 1713, 1865, 1879
HphI	GGTGA	6 cut(s)	847, 910, 1157, 1904, 1934, 2089
Hpy166II	GTNNAC	7 cut(s)	259, 459, 674, 943, 1194, 1810, 2143
Hpy188I	TCNGA	6 cut(s)	33, 313, 533, 782, 887, 1962
Hpy188III	TCNNGA	9 cut(s)	586, 603, 794, 1016, 1199, 1252, 1544, 1641, 2176
Hpy8I	GTNNAC	7 cut(s)	259, 459, 674, 943, 1194, 1810, 2143
Hpy99I	CGWCG	2 cut(s)	155, 418
HpyAV	CCTTC	8 cut(s)	58, 441, 736, 878, 1043, 1597, 1945, 2173
HpyCH4III	ACNGT	8 cut(s)	99, 155, 263, 1022, 1501, 1900, 2113, 2121
HpyCH4IV	ACGT	4 cut(s)	609, 1219, 1743, 1787
HpyF3I	CTNAG	7 cut(s)	121, 393, 462, 1034, 1077, 2189, 2196
HpySE526I	ACGT	4 cut(s)	609, 1219, 1743, 1787
Hsp92II	CATG	9 cut(s)	669, 820, 1547, 1786, 1825, 1834, 1997, 2294, 2303
HspAI	GCGC	2 cut(s)	855, 2150
LmnI	GCTCC	5 cut(s)	377, 1052, 1210, 1727, 1963
Lsp1109I	GCAGC	7 cut(s)	174, 674, 793, 970, 998, 1094, 1717
LweI	GCATC	4 cut(s)	187, 1113, 1456, 1483
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	5 cut(s)	810, 1016, 1130, 1949, 2054
MaeII	ACGT	4 cut(s)	609, 1219, 1743, 1787
MaeIII	GTNAC	7 cut(s)	89, 590, 739, 916, 1346, 1706, 1892
MboII	GAAGA	9 cut(s)	253, 561, 584, 611, 989, 1129, 1556, 1574, 2048
MflI	RGATCY	3 cut(s)	1012, 1171, 1519
MhlI	GDGCHC	5 cut(s)	122, 514, 1196, 1960, 2145
MluCI	AATT	3 cut(s)	1039, 1108, 1683
MlyI	GAGTC	3 cut(s)	556, 1549, 2137
MmeI	TCCRAC	2 cut(s)	291, 1307
Mph1103I	ATGCAT	1 cut(s)	1909
MroXI	GAANNNNTTC	1 cut(s)	2183
MseI	TTAA	2 cut(s)	522, 654
MslI	CAYNNNNRTG	3 cut(s)	1121, 1835, 2244
MspI	CCGG	7 cut(s)	129, 374, 566, 1425, 1713, 1865, 1879
Mva1269I	GAATGC	2 cut(s)	808, 1692
MvaI	CCWGG	6 cut(s)	215, 348, 1208, 1263, 1457, 1569
MvnI	CGCG	3 cut(s)	413, 1229, 2150
NciI	CCSGG	6 cut(s)	375, 567, 1426, 1713, 1865, 1866
NdeI	CATATG	1 cut(s)	1165
NlaIII	CATG	9 cut(s)	669, 820, 1547, 1786, 1825, 1834, 1997, 2294, 2303
NlaIV	GGNNCC	7 cut(s)	157, 352, 512, 513, 1315, 1360, 1818
NmuCI	GTSAC	2 cut(s)	916, 1892
NsbI	TGCGCA	1 cut(s)	856
NsiI	ATGCAT	1 cut(s)	1909
NspI	RCATGY	2 cut(s)	669, 2303
OliI	CACNNNNGTG	1 cut(s)	2244
PagI	TCATGA	1 cut(s)	1543
PasI	CCCWGGG	1 cut(s)	347
PceI	AGGCCT	2 cut(s)	68, 1392
PciI	ACATGT	1 cut(s)	2299
PctI	GAATGC	2 cut(s)	808, 1692
PdmI	GAANNNNTTC	1 cut(s)	2183
PfeI	GAWTC	2 cut(s)	929, 2172
PflFI	GACNNNGTC	1 cut(s)	1814
PflMI	CCANNNNNTGG	2 cut(s)	1213, 1788
PfoI	TCCNGGA	4 cut(s)	373, 565, 1261, 1567
PinAI	ACCGGT	1 cut(s)	1878
PleI	GAGTC	3 cut(s)	556, 1548, 2136
PmaCI	CACGTG	1 cut(s)	1220
PmlI	CACGTG	1 cut(s)	1220
PpsI	GAGTC	3 cut(s)	556, 1548, 2136
Ppu21I	YACGTR	1 cut(s)	1220
PpuMI	RGGWCCY	3 cut(s)	1313, 1616, 1816
PscI	ACATGT	1 cut(s)	2299
PsiI	TTATAA	2 cut(s)	1073, 1761
Psp124BI	GAGCTC	2 cut(s)	122, 1960
Psp5II	RGGWCCY	3 cut(s)	1313, 1616, 1816
Psp6I	CCWGG	6 cut(s)	213, 346, 1206, 1261, 1455, 1567
PspCI	CACGTG	1 cut(s)	1220
PspEI	GGTNACC	1 cut(s)	1706
PspGI	CCWGG	6 cut(s)	213, 346, 1206, 1261, 1455, 1567
PspN4I	GGNNCC	7 cut(s)	157, 352, 512, 513, 1315, 1360, 1818
PspOMI	GGGCCC	1 cut(s)	510
PspPI	GGNCC	9 cut(s)	211, 351, 510, 511, 697, 1178, 1313, 1616, 1816
PspPPI	RGGWCCY	3 cut(s)	1313, 1616, 1816
PstI	CTGCAG	1 cut(s)	988
PstNI	CAGNNNCTG	2 cut(s)	226, 1213
PsuI	RGATCY	3 cut(s)	1012, 1171, 1519
PsyI	GACNNNGTC	1 cut(s)	1814
RsaI	GTAC	4 cut(s)	479, 944, 1503, 2295
RsaNI	GTAC	4 cut(s)	478, 943, 1502, 2294
RseI	CAYNNNNRTG	3 cut(s)	1121, 1835, 2244
SacI	GAGCTC	2 cut(s)	122, 1960
SaqAI	TTAA	2 cut(s)	522, 654
Sau96I	GGNCC	9 cut(s)	211, 351, 510, 511, 697, 1178, 1313, 1616, 1816
SchI	GAGTC	3 cut(s)	556, 1549, 2137
SduI	GDGCHC	5 cut(s)	122, 514, 1196, 1960, 2145
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	187, 1113, 1456, 1483
SfcI	CTRYAG	1 cut(s)	984
SinI	GGWCC	6 cut(s)	211, 697, 1178, 1313, 1616, 1816
SmaI	CCCGGG	1 cut(s)	1866
SmiMI	CAYNNNNRTG	3 cut(s)	1121, 1835, 2244
SmlI	CTYRAG	2 cut(s)	1250, 2242
SmoI	CTYRAG	2 cut(s)	1250, 2242
Sse9I	AATT	3 cut(s)	1039, 1108, 1683
SseBI	AGGCCT	2 cut(s)	68, 1392
SsiI	CCGC	8 cut(s)	147, 191, 209, 343, 408, 411, 1227, 1945
SspI	AATATT	2 cut(s)	359, 520
SspMI	CTAG	5 cut(s)	810, 1016, 1130, 1949, 2054
SstI	GAGCTC	2 cut(s)	122, 1960
StuI	AGGCCT	2 cut(s)	68, 1392
StyI	CCWWGG	2 cut(s)	1299, 1980
TaaI	ACNGT	8 cut(s)	99, 155, 263, 1022, 1501, 1900, 2113, 2121
TaiI	ACGT	4 cut(s)	612, 1222, 1746, 1790
TaqI	TCGA	7 cut(s)	362, 1140, 1653, 1954, 2061, 2126, 2175
TaqII	GACCGA	1 cut(s)	1166
TasI	AATT	3 cut(s)	1039, 1108, 1683
TatI	WGTACW	4 cut(s)	477, 942, 1501, 2293
TauI	GCSGC	4 cut(s)	150, 194, 345, 413
TfiI	GAWTC	2 cut(s)	929, 2172
Tru1I	TTAA	2 cut(s)	522, 654
Tru9I	TTAA	2 cut(s)	522, 654
TscAI	CASTG	9 cut(s)	63, 268, 308, 741, 1062, 1275, 1456, 1861, 1894
TseFI	GTSAC	2 cut(s)	916, 1892
TseI	GCWGC	7 cut(s)	162, 662, 806, 983, 986, 1082, 1730
Tsp45I	GTSAC	2 cut(s)	916, 1892
TspDTI	ATGAA	2 cut(s)	813, 1847
TspGWI	ACGGA	4 cut(s)	339, 612, 723, 1932
TspMI	CCCGGG	1 cut(s)	1864
TspRI	CASTG	9 cut(s)	63, 268, 308, 741, 1062, 1275, 1456, 1861, 1894
Tth111I	GACNNNGTC	1 cut(s)	1814
Van91I	CCANNNNNTGG	2 cut(s)	1213, 1788
VneI	GTGCAC	2 cut(s)	1192, 2141
VpaK11BI	GGWCC	6 cut(s)	211, 697, 1178, 1313, 1616, 1816
XagI	CCTNNNNNAGG	1 cut(s)	1386
XbaI	TCTAGA	1 cut(s)	1015
XceI	RCATGY	2 cut(s)	669, 2303
XcmI	CCANNNNNNNNNTGG	4 cut(s)	448, 836, 1297, 1417
XmaI	CCCGGG	1 cut(s)	1864
XmiI	GTMKAC	1 cut(s)	1809
XmnI	GAANNNNTTC	1 cut(s)	2183
XspI	CTAG	5 cut(s)	810, 1016, 1130, 1949, 2054
Zsp2I	ATGCAT	1 cut(s)	1909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.