Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000026.1

Orthogroup ID

OG0005912

Physical Location & Seq

Genomic Coordinates Reverse (-)

11201 .. 11860

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggcggcagcgatcccgttttcttccatggcggcggcgatccagaagaaaacagagtcgctccagtactggagggatttctttgccactgcatacaactccaccattttcgatattctcgatcacgccatcaccgtcgccgcctctgatttctcggaggagttcactcgccagaggactcgaattctcgatttgattcaacgtttgggtttgggctcaaatctagggttttgtgatggtgctgggtccgatcaaaaggctgagcagccttcaaagccgtcgctcaaaatacgcataaagatcgtgaagcgaaatgttgatggtaccctgatcgaacccagttcagatgaagcgaaattgatcgagccctgttctcatgatctgatcaagcccgcaccctgtgttggtgttggtgatcaagcaaaatcgatcaagccaaagcagccgtgtttggatgaagcggctattgaagcaaagcttcaggccacaaagagaaagctccgcgatcgatatcaagaaatcgagaaccataagaggcagaggaggattcaagtcttaaaccatcttcccaagcaagacttcaggattcgatgccctgctgccactgctaaacccaaacttggaaaccattggaaaccagtactaaaaatcagaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

219

Amino Acids

24.62

Weight (kDa)

9.61

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005912)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07530 FvH4_4g13680 FvH4_7g13310
rosa_multiflora	Rmu_sc0000026.1_g000002 Rmu_sc0013866.1_g000002 Rmu_sc0020815.1_g000008 Rmu_sc0021925.1_g000001 Rmu_sc0024961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063090 Rroxscaffold_4G00303350 Rroxscaffold_4G00317150
rosa_rugosa	Rorug01G0112100 Rorug01G0120100 Rorug01G0120400 Rorug01G0223600
rosa_samantha	Rh1AG051300 Rh1AG053600 Rh1AG136000 Rh1AG237600 Rh1AG237800 Rh1AG238100 Rh1BG111500 Rh1BG207800 Rh1BG208100 Rh1BG208200 Rh1BG208400 Rh1CG221900 Rh1CG222300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccII	CGCG	1 cut(s)	504
AciI	CCGC	7 cut(s)	5, 32, 35, 141, 393, 461, 502
AclI	AACGTT	1 cut(s)	202
AclWI	GGATC	2 cut(s)	7, 34
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	464, 565
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	3 cut(s)	68, 325, 642
AfiI	CCNNNNNNNGG	2 cut(s)	404, 620
AgsI	TTSAA	4 cut(s)	200, 273, 470, 551
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AluBI	AGCT	2 cut(s)	478, 499
AluI	AGCT	2 cut(s)	478, 499
AlwI	GGATC	2 cut(s)	7, 34
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	4 cut(s)	8, 265, 442, 599
ApoI	RAATTY	1 cut(s)	183
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	124, 425
AvaII	GGWCC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	2 cut(s)	218, 369
BbvI	GCAGC	4 cut(s)	20, 277, 454, 586
BccI	CCATC	4 cut(s)	137, 230, 314, 570
BceAI	ACGGC	2 cut(s)	262, 430
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BclI	TGATCA	2 cut(s)	384, 415
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	9 cut(s)	6, 9, 33, 36, 141, 266, 443, 462, 600
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	9 cut(s)	7, 10, 34, 37, 142, 267, 444, 463, 601
BmcAI	AGTACT	2 cut(s)	68, 642
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	247, 325
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	333
BpmI	CTGGAG	2 cut(s)	47, 91
Bpu1102I	GCTNAGC	1 cut(s)	261
Bsa29I	ATCGAT	2 cut(s)	428, 508
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 620
Bse1I	ACTGG	4 cut(s)	64, 74, 339, 638
Bse8I	GATNNNNATC	1 cut(s)	510
BseCI	ATCGAT	2 cut(s)	428, 508
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	404, 620
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	4 cut(s)	64, 74, 339, 638
BseRI	GAGGAG	2 cut(s)	173, 556
BseXI	GCAGC	4 cut(s)	20, 277, 454, 586
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	504
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	323
BshVI	ATCGAT	2 cut(s)	428, 508
BsiEI	CGRYCG	1 cut(s)	508
BslI	CCNNNNNNNGG	2 cut(s)	404, 620
BsnI	GGCC	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	218, 369
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	7 cut(s)	5, 32, 35, 141, 393, 461, 502
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	2 cut(s)	428, 508
BspFNI	CGCG	1 cut(s)	504
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	247, 325
BspPI	GGATC	2 cut(s)	7, 34
BspT107I	GGYRCC	1 cut(s)	323
BsrI	ACTGG	4 cut(s)	64, 74, 339, 638
BssECI	CCNNGG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	504
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 442, 470, 605
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	4 cut(s)	20, 277, 454, 586
Bsu15I	ATCGAT	2 cut(s)	428, 508
BsuRI	GGCC	1 cut(s)	485
BsuTUI	ATCGAT	2 cut(s)	428, 508
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	2 cut(s)	87, 603
BtsIMutI	CAGTG	2 cut(s)	87, 603
Cac8I	GCNNGC	1 cut(s)	393
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	246
ClaI	ATCGAT	2 cut(s)	428, 508
Csp6I	GTAC	3 cut(s)	67, 324, 641
CviAII	CATG	2 cut(s)	28, 377
CviQI	GTAC	3 cut(s)	67, 324, 641
DdeI	CTNAG	1 cut(s)	261
DraIII	CACNNNGTG	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	218, 369
Eco32I	GATATC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	464, 565
EcoRI	GAATTC	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	218, 369
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	31, 380
FaiI	YATR	6 cut(s)	29, 94, 296, 378, 531, 658
FalI	AAGNNNNNCTT	4 cut(s)	462, 494, 563, 595
FatI	CATG	2 cut(s)	27, 376
FauI	CCCGC	1 cut(s)	400
FbaI	TGATCA	2 cut(s)	384, 415
Fnu4HI	GCNGC	9 cut(s)	6, 9, 33, 36, 141, 266, 443, 462, 600
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	2 cut(s)	218, 369
Fsp4HI	GCNGC	9 cut(s)	6, 9, 33, 36, 141, 266, 443, 462, 600
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	9 cut(s)	6, 9, 33, 36, 141, 266, 443, 462, 600
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	2 cut(s)	47, 91
HaeIII	GGCC	1 cut(s)	485
Hin1II	CATG	2 cut(s)	31, 380
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	5 cut(s)	56, 178, 196, 547, 586
HphI	GGTGA	2 cut(s)	124, 425
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	6 cut(s)	148, 157, 250, 346, 384, 653
Hpy188III	TCNNGA	8 cut(s)	43, 119, 188, 304, 377, 515, 523, 583
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	2 cut(s)	140, 283
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 442, 470, 605
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	2 cut(s)	31, 380
KpnI	GGTACC	1 cut(s)	327
Ksp22I	TGATCA	2 cut(s)	384, 415
LmnI	GCTCC	2 cut(s)	66, 504
Lsp1109I	GCAGC	4 cut(s)	20, 277, 454, 586
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	202
MboII	GAAGA	3 cut(s)	15, 58, 557
MhlI	GDGCHC	2 cut(s)	218, 369
MluCI	AATT	2 cut(s)	183, 356
MlyI	GAGTC	2 cut(s)	65, 172
MnlI	CCTC	7 cut(s)	66, 151, 154, 168, 528, 534, 537
MseI	TTAA	1 cut(s)	557
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	4 cut(s)	274, 442, 470, 605
NcoI	CCATGG	1 cut(s)	27
NlaIII	CATG	2 cut(s)	31, 380
NlaIV	GGNNCC	2 cut(s)	247, 325
PagI	TCATGA	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 132
PfeI	GAWTC	3 cut(s)	196, 547, 586
PkrI	GCNGC	9 cut(s)	7, 10, 34, 37, 142, 267, 444, 463, 601
Ple19I	CGATCG	1 cut(s)	508
PleI	GAGTC	2 cut(s)	64, 172
PpsI	GAGTC	2 cut(s)	64, 172
Psp1406I	AACGTT	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	247, 325
PspPI	GGNCC	1 cut(s)	246
PvuI	CGATCG	1 cut(s)	508
RsaI	GTAC	3 cut(s)	68, 325, 642
RsaNI	GTAC	3 cut(s)	67, 324, 641
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	9 cut(s)	6, 9, 33, 36, 141, 266, 443, 462, 600
Sau96I	GGNCC	1 cut(s)	246
ScaI	AGTACT	2 cut(s)	68, 642
SchI	GAGTC	2 cut(s)	65, 172
SduI	GDGCHC	2 cut(s)	218, 369
SetI	ASST	3 cut(s)	205, 480, 501
SfaNI	GCATC	1 cut(s)	581
SinI	GGWCC	1 cut(s)	246
Sse9I	AATT	2 cut(s)	183, 356
SsiI	CCGC	7 cut(s)	5, 32, 35, 141, 393, 461, 502
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	205
TasI	AATT	2 cut(s)	183, 356
TatI	WGTACW	2 cut(s)	66, 640
TauI	GCSGC	5 cut(s)	8, 35, 38, 143, 464
TfiI	GAWTC	3 cut(s)	196, 547, 586
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	2 cut(s)	94, 610
TseI	GCWGC	4 cut(s)	8, 265, 442, 599
TspDTI	ATGAA	2 cut(s)	363, 471
TspRI	CASTG	2 cut(s)	94, 610
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	183
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	2 cut(s)	68, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.