Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000046.1

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

172375 .. 176812

Gene Structure 4438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgaaatatattagctcgcatattcacaatgatatttccaaaggattacagagagaatactttctttatttcgtccctcgccgttcggttgcttgtgagaagatcctcgaggaggaaaaagtccacaacttgttgactataggggagtaccagctatacactgttccgttggacgaggatgttctgtcatttgaacttgatcaatctagcaaggagtgcctagttgatggtgatacaagctcactttggcatattgcaaaagccattcacaagctcgagttttcttttggggtaataccaaatgtgagggcaaaaggaaaagcatcagtacgtgttgctgacattctaaaccgcatgcaagcagaggaaccggttaactcaccagatgtggttgttccagagataaatacactcatccttttagatcgtgaggtggacatggttactcccatgtgtactcagttaacatacgaggggcttctggatgagtttttgcatatcagtaatggttctgtagaggttgatgcatccatgatgggtggccaacaagagggaaagaagatgaaagttccacttaattcaagtgacaagctgtttaaagagacacgagatctcaactttgaagttgttgtccagattctacgtcaaaaagcaacatccatgaagcaggactacactgaggtgacttcaaatagccagacagtttctgaattgaaggattttgtcaaaaagctgaactcgttgccagaaatgaccaggcacataaatcttgctcagcatctgacgactatcacatcaaagtcatctttccttggacaacttgacatggaacacacaattattgagggtcagagttttgacatccccaatgacatcgcctatgccttttctggatatgcgcctcttagcattcgcctcgtccagcacgctgttagatctggatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

315

Amino Acids

35.66

Weight (kDa)

5.33

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	4 - 283	2.7e-58	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	107
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	541
AfaI	GTAC	3 cut(s)	149, 330, 457
AfiI	CCNNNNNNNGG	2 cut(s)	112, 550
AflIII	ACRYGT	1 cut(s)	331
AgeI	ACCGGT	1 cut(s)	370
AgsI	TTSAA	5 cut(s)	194, 582, 623, 690, 715
AjnI	CCWGG	1 cut(s)	755
AleI	CACNNNNGTG	1 cut(s)	680
AluBI	AGCT	6 cut(s)	15, 154, 240, 274, 592, 733
AluI	AGCT	6 cut(s)	15, 154, 240, 274, 592, 733
Alw26I	GTCTC	1 cut(s)	596
AlwI	GGATC	1 cut(s)	97
AlwNI	CAGNNNCTG	2 cut(s)	707, 781
Ama87I	CYCGRG	2 cut(s)	107, 275
AoxI	GGCC	1 cut(s)	541
AsiGI	ACCGGT	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	901
AsuHPI	GGTGA	3 cut(s)	242, 372, 694
AvaI	CYCGRG	2 cut(s)	107, 275
BalI	TGGCCA	1 cut(s)	543
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BauI	CACGAG	1 cut(s)	606
BccI	CCATC	3 cut(s)	221, 529, 936
BceAI	ACGGC	1 cut(s)	66
BcgI	CGANNNNNNTGC	2 cut(s)	898, 932
BciT130I	CCWGG	1 cut(s)	757
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	596
BfaI	CTAG	2 cut(s)	207, 221
BfmI	CTRYAG	2 cut(s)	138, 513
BglII	AGATCT	2 cut(s)	610, 935
BlpI	GCTNAGC	1 cut(s)	774
Bme1390I	CCNGG	1 cut(s)	757
BmeT110I	CYCGRG	2 cut(s)	107, 275
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	757
BmsI	GCATC	4 cut(s)	332, 514, 536, 787
Bpu1102I	GCTNAGC	1 cut(s)	774
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	811
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 550
Bse118I	RCCGGY	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	757
BseDI	CCNNGG	1 cut(s)	811
BseGI	GGATG	7 cut(s)	184, 414, 490, 527, 656, 861, 947
BseLI	CCNNNNNNNGG	2 cut(s)	112, 550
BseMII	CTCAG	3 cut(s)	473, 669, 788
BseRI	GAGGAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	543
BshTI	ACCGGT	1 cut(s)	370
BsiHKCI	CYCGRG	2 cut(s)	107, 275
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	112, 550
BsmAI	GTCTC	1 cut(s)	596
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	1 cut(s)	543
BsoBI	CYCGRG	2 cut(s)	107, 275
Bsp143I	GATC	5 cut(s)	102, 199, 424, 610, 935
Bsp1720I	GCTNAGC	1 cut(s)	774
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	3 cut(s)	472, 670, 787
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	811
BssMI	GATC	5 cut(s)	102, 199, 424, 610, 935
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	811
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	2 cut(s)	163, 703
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	4 cut(s)	17, 356, 360, 927
BstDEI	CTNAG	4 cut(s)	459, 678, 774, 905
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	7 cut(s)	184, 414, 490, 527, 656, 861, 947
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	5 cut(s)	105, 202, 427, 613, 938
BstMAI	GTCTC	1 cut(s)	596
BstMBI	GATC	5 cut(s)	102, 199, 424, 610, 935
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	1 cut(s)	757
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	755
BstSFI	CTRYAG	2 cut(s)	138, 513
BstX2I	RGATCY	3 cut(s)	102, 610, 935
BstYI	RGATCY	3 cut(s)	102, 610, 935
BsuRI	GGCC	1 cut(s)	543
BtgZI	GCGATG	1 cut(s)	859
BtsCI	GGATG	7 cut(s)	184, 414, 490, 527, 656, 861, 947
BtsIMutI	CAGTG	2 cut(s)	159, 675
Cac8I	GCNNGC	4 cut(s)	17, 356, 360, 927
CaiI	CAGNNNCTG	2 cut(s)	707, 781
CfoI	GCGC	1 cut(s)	901
Cfr10I	RCCGGY	1 cut(s)	370
Csp6I	GTAC	3 cut(s)	148, 329, 456
CspAI	ACCGGT	1 cut(s)	370
CviAII	CATG	6 cut(s)	355, 439, 451, 532, 661, 826
CviQI	GTAC	3 cut(s)	148, 329, 456
DdeI	CTNAG	4 cut(s)	459, 678, 774, 905
DpnI	GATC	5 cut(s)	104, 201, 426, 612, 937
DpnII	GATC	5 cut(s)	102, 199, 424, 610, 935
DraI	TTTAAA	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	811
Eco88I	CYCGRG	2 cut(s)	107, 275
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	755
EcoT14I	CCWWGG	1 cut(s)	811
EcoT22I	ATGCAT	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	811
FaeI	CATG	6 cut(s)	358, 442, 454, 535, 664, 829
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	6 cut(s)	354, 438, 450, 531, 660, 825
FbaI	TGATCA	1 cut(s)	199
FokI	GGATG	6 cut(s)	191, 401, 497, 514, 643, 848
FspBI	CTAG	2 cut(s)	207, 221
GlaI	GCGC	1 cut(s)	900
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	1 cut(s)	901
Hin1II	CATG	6 cut(s)	358, 442, 454, 535, 664, 829
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	3 cut(s)	135, 376, 465
HindII	GTYRAC	3 cut(s)	135, 376, 465
HinfI	GANTC	1 cut(s)	637
HpaI	GTTAAC	2 cut(s)	376, 465
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	3 cut(s)	242, 372, 694
Hpy166II	GTNNAC	6 cut(s)	124, 135, 376, 436, 456, 465
Hpy188I	TCNGA	3 cut(s)	709, 783, 852
Hpy188III	TCNNGA	6 cut(s)	398, 428, 482, 634, 891, 939
Hpy8I	GTNNAC	6 cut(s)	124, 135, 376, 436, 456, 465
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	2 cut(s)	163, 703
HpyCH4IV	ACGT	2 cut(s)	331, 643
HpyCH4V	TGCA	4 cut(s)	257, 358, 496, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	4 cut(s)	459, 678, 774, 905
HpySE526I	ACGT	2 cut(s)	331, 643
Hsp92II	CATG	6 cut(s)	358, 442, 454, 535, 664, 829
HspAI	GCGC	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	2 cut(s)	376, 465
Kzo9I	GATC	5 cut(s)	102, 199, 424, 610, 935
LweI	GCATC	4 cut(s)	332, 514, 536, 787
MaeI	CTAG	2 cut(s)	207, 221
MaeII	ACGT	2 cut(s)	331, 643
MaeIII	GTNAC	3 cut(s)	442, 584, 682
MalI	GATC	5 cut(s)	104, 201, 426, 612, 937
MboI	GATC	5 cut(s)	102, 199, 424, 610, 935
MboII	GAAGA	2 cut(s)	112, 571
MflI	RGATCY	3 cut(s)	102, 610, 935
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	3 cut(s)	577, 710, 837
MluNI	TGGCCA	1 cut(s)	543
MmeI	TCCRAC	1 cut(s)	150
Mox20I	TGGCCA	1 cut(s)	543
Mph1103I	ATGCAT	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	4 cut(s)	375, 464, 576, 597
MslI	CAYNNNNRTG	1 cut(s)	680
Msp20I	TGGCCA	1 cut(s)	543
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	757
Mva1269I	GAATGC	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	757
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeII	GATC	5 cut(s)	102, 199, 424, 610, 935
NlaIII	CATG	6 cut(s)	358, 442, 454, 535, 664, 829
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	2 cut(s)	584, 682
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	1 cut(s)	358
OliI	CACNNNNGTG	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	358
PaeR7I	CTCGAG	2 cut(s)	107, 275
PctI	GAATGC	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	637
PinAI	ACCGGT	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	369
PspXI	VCTCGAGB	2 cut(s)	107, 275
PstNI	CAGNNNCTG	2 cut(s)	707, 781
PsuI	RGATCY	3 cut(s)	102, 610, 935
RsaI	GTAC	3 cut(s)	149, 330, 457
RsaNI	GTAC	3 cut(s)	148, 329, 456
RseI	CAYNNNNRTG	1 cut(s)	680
SaqAI	TTAA	4 cut(s)	375, 464, 576, 597
Sau3AI	GATC	5 cut(s)	102, 199, 424, 610, 935
ScrFI	CCNGG	1 cut(s)	757
SfaNI	GCATC	4 cut(s)	332, 514, 536, 787
SfcI	CTRYAG	2 cut(s)	138, 513
Sfr274I	CTCGAG	2 cut(s)	107, 275
SlaI	CTCGAG	2 cut(s)	107, 275
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	2 cut(s)	107, 275
SmoI	CTYRAG	2 cut(s)	107, 275
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	3 cut(s)	577, 710, 837
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	2 cut(s)	207, 221
StyD4I	CCNGG	1 cut(s)	755
StyI	CCWWGG	1 cut(s)	811
TaaI	ACNGT	2 cut(s)	163, 703
TaiI	ACGT	2 cut(s)	334, 646
TaqI	TCGA	2 cut(s)	108, 276
TasI	AATT	3 cut(s)	577, 710, 837
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	4 cut(s)	375, 464, 576, 597
Tru9I	TTAA	4 cut(s)	375, 464, 576, 597
TscAI	CASTG	2 cut(s)	166, 682
TseFI	GTSAC	2 cut(s)	584, 682
Tsp45I	GTSAC	2 cut(s)	584, 682
TspDTI	ATGAA	3 cut(s)	17, 578, 677
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	166, 682
XagI	CCTNNNNNAGG	1 cut(s)	110
XceI	RCATGY	1 cut(s)	358
XhoI	CTCGAG	2 cut(s)	107, 275
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	2 cut(s)	207, 221
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.