Rmu_sc0000276.1_g000002

Region found in RelA / SpoT proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000276.1
OG0003029
Physical Location & Seq
Forward (+)
1559 .. 14586
13028 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1500 bp
ctgagcgaaaccacgccagcggaacttctcccttgtcattttccaagagacgaaatctccgctgagcaaagccctgccagcgggacttctcccttgccattcggcaagcgcggtgcacgtctatcggacgctgcttcctgctgcatccagcgggaggatgtccgccaaacggaaaatcccgaggctacgcctcactctgacaacgaccgctacgcggcgttaccgtcagaccgtccctacgggacacggggactagtcaaacagtctacgacggccctgatcaggcacgttgacccccgtcatttgggtaacgggaactacaacattaacacaagtatcgatccgcccatcggatcagcgttaactaaggttatcgaagatgaaggcatgagtgatggtgataaggttgtcaaggatgaaggcatgaatgatggtgataaggttgtcgaggatgaaggcatgagtgatggtgataaggttgtcgaggatgaaggcatgagtgatggtgataaggccgtcgaagatgaaggcatgagtgatggtgataagcaattttgcaaggcaaaatgcataactttacatgttgtgtacagtttataccctagcatatattggcatattctgttgaatgaggagtttggtgctactgttcgccatattgtagaaggagagactaaggtttcaaagttggaaaagttgaaatgtaaggatgaacatgattctgtacaagatgtaaaagcagatgacctaaggcagatgcttctagccatgacagaggaggtccgggttatcattgtcaagttagctgacagattacataacatgcgcactctttcacacatgcctccacataagcagtccagcattgcaagggagacattgcaggtctttgctcctctagcaaagttgcttgggatgtaccaaatcaagtcatgcgacggtaaacctttgccgtcgctaatgatcttgcggcggcattttgccgtggctaaaagtattggcgacgccaccaattgcgtcagaagctttgccgtcgcagagccgtcgccaatgcttttttgcgactgcaaaatagcttttcgcaacgaagttgataagagtactgacggggttggtcataacacggcggtacacgccttagttgagtctgataagcacattccagggattgataaggtgactgccattcacactcaaagccttggccccagcttgcctgccaaagggtcaactagtgagtgggcgacccatatggacaacttcatggttcgatttgcttctaaagaggagtctgctctaagcatggctgatgttacaccagtgttgagcggagacatcgttgtttttgctggtatgaaaattccttcagagttgggagagttgcgcaaggctcaagatgatctaagttccagtctgcgtgacgtttctgtgcctgccatggagtgcgtactagaatcttcttggaaggatggcagtcgcttctcttattatttgtattag

Protein Analysis

499

Amino Acids

54.76

Weight (kDa)

5.23

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD_4 PF13328 208 - 306 5.9e-28 HD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 827, 1385
Acc36I ACCTGC 1 cut(s) 874
AccBSI CCGCTC 1 cut(s) 1329
AccI GTMKAC 1 cut(s) 266
AccII CGCG 2 cut(s) 111, 215
AclWI GGATC 2 cut(s) 335, 361
AcsI RAATTY 1 cut(s) 1359
AcuI CTGAAG 1 cut(s) 1350
AcyI GRCGYC 1 cut(s) 1005
AfaI GTAC 6 cut(s) 590, 726, 920, 1102, 1131, 1449
AfiI CCNNNNNNNGG 8 cut(s) 80, 154, 169, 214, 282, 304, 350, 1223
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 3 cut(s) 628, 684, 700
AhlI ACTAGT 2 cut(s) 253, 1232
AjiI CACGTC 1 cut(s) 119
AjnI CCWGG 1 cut(s) 1162
AluBI AGCT 4 cut(s) 806, 1026, 1076, 1212
AluI AGCT 4 cut(s) 806, 1026, 1076, 1212
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 4 cut(s) 42, 665, 869, 1326
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 2 cut(s) 335, 361
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 3 cut(s) 273, 513, 1204
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 131, 141
ApoI RAATTY 1 cut(s) 1359
AspLEI GCGC 3 cut(s) 111, 828, 1386
AspS9I GGNCC 3 cut(s) 274, 781, 1205
AsuC2I CCSGG 1 cut(s) 785
AsuHPI GGTGA 6 cut(s) 410, 446, 482, 518, 554, 1189
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 781
AxyI CCTNAGG 1 cut(s) 749
BaeGI GKGCMC 1 cut(s) 118
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 2 cut(s) 118, 128
BccI CCATC 7 cut(s) 356, 389, 425, 461, 497, 533, 1463
BceAI ACGGC 7 cut(s) 288, 500, 937, 968, 1016, 1027, 1140
BcgI CGANNNNNNTGC 4 cut(s) 105, 139, 1026, 1060
BciT130I CCWGG 1 cut(s) 1164
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 1 cut(s) 785
BcoDI GTCTC 4 cut(s) 42, 665, 869, 1326
BcuI ACTAGT 2 cut(s) 253, 1232
BfaI CTAG 6 cut(s) 254, 603, 764, 899, 1233, 1451
BfuAI ACCTGC 1 cut(s) 874
BisI GCNGC 5 cut(s) 132, 142, 216, 971, 974
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 5 cut(s) 133, 143, 217, 972, 975
BmcAI AGTACT 1 cut(s) 1102
Bme1390I CCNGG 2 cut(s) 785, 1164
Bme18I GGWCC 1 cut(s) 781
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 3 cut(s) 274, 781, 1205
BmiI GGNNCC 1 cut(s) 1207
BmrFI CCNGG 2 cut(s) 785, 1164
BmsI GCATC 2 cut(s) 153, 747
BoxI GACNNNNGTC 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 1377
BpuMI CCSGG 1 cut(s) 785
Bsa29I ATCGAT 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 1005
BsaJI CCNNGG 5 cut(s) 180, 984, 1163, 1201, 1437
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 1323, 1353
Bsc4I CCNNNNNNNGG 8 cut(s) 80, 154, 169, 214, 282, 304, 350, 1223
Bse1I ACTGG 2 cut(s) 1319, 1410
Bse21I CCTNAGG 1 cut(s) 749
Bse3DI GCAATG 2 cut(s) 864, 878
BseBI CCWGG 1 cut(s) 1164
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 5 cut(s) 180, 984, 1163, 1201, 1437
BseGI GGATG 8 cut(s) 144, 163, 421, 457, 493, 715, 921, 1474
BseLI CCNNNNNNNGG 8 cut(s) 80, 154, 169, 214, 282, 304, 350, 1223
BseMI GCAATG 2 cut(s) 864, 878
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 1319, 1410
BseRI GAGGAG 4 cut(s) 647, 791, 885, 1301
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 2 cut(s) 118, 128
BseYI CCCAGC 1 cut(s) 1208
Bsh1236I CGCG 2 cut(s) 111, 215
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 3 cut(s) 275, 515, 1206
BshVI ATCGAT 1 cut(s) 339
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 784
BslFI GGGAC 4 cut(s) 97, 219, 256, 264
BslI CCNNNNNNNGG 8 cut(s) 80, 154, 169, 214, 282, 304, 350, 1223
BsmAI GTCTC 4 cut(s) 42, 665, 869, 1326
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 4 cut(s) 97, 219, 256, 264
BsnI GGCC 3 cut(s) 275, 515, 1206
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 118
Bsp1407I TGTACA 2 cut(s) 588, 724
Bsp143I GATC 5 cut(s) 279, 340, 353, 963, 1399
Bsp1720I GCTNAGC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 1437
BspANI GGCC 3 cut(s) 275, 515, 1206
BspCNI CTCAG 1 cut(s) 55
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 2 cut(s) 111, 215
BspLI GGNNCC 1 cut(s) 1207
BspMI ACCTGC 1 cut(s) 874
BspPI GGATC 2 cut(s) 335, 361
BsrBI CCGCTC 1 cut(s) 1329
BsrDI GCAATG 2 cut(s) 864, 878
BsrGI TGTACA 2 cut(s) 588, 724
BsrI ACTGG 2 cut(s) 1319, 1410
BssECI CCNNGG 5 cut(s) 180, 984, 1163, 1201, 1437
BssMI GATC 5 cut(s) 279, 340, 353, 963, 1399
BssNI GRCGYC 1 cut(s) 1005
BssT1I CCWWGG 2 cut(s) 1201, 1437
Bst2UI CCWGG 1 cut(s) 1164
Bst4CI ACNGT 6 cut(s) 225, 233, 264, 593, 649, 941
BstACI GRCGYC 1 cut(s) 1005
BstAUI TGTACA 2 cut(s) 588, 724
BstC8I GCNNGC 6 cut(s) 18, 79, 107, 1214, 1218, 1434
BstDEI CTNAG 8 cut(s) 2, 63, 366, 675, 749, 1138, 1298, 1403
BstDSI CCRYGG 2 cut(s) 984, 1437
BstENI CCTNNNNNAGG 1 cut(s) 1221
BstF5I GGATG 8 cut(s) 144, 163, 421, 457, 493, 715, 921, 1474
BstFNI CGCG 2 cut(s) 111, 215
BstHHI GCGC 3 cut(s) 111, 828, 1386
BstKTI GATC 5 cut(s) 282, 343, 356, 966, 1402
BstMAI GTCTC 4 cut(s) 42, 665, 869, 1326
BstMBI GATC 5 cut(s) 279, 340, 353, 963, 1399
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 4 cut(s) 78, 899, 1023, 1133
BstNI CCWGG 1 cut(s) 1164
BstNSI RCATGY 3 cut(s) 584, 826, 844
BstPAI GACNNNNGTC 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 783, 1162
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 2 cut(s) 111, 215
BstV1I GCAGC 2 cut(s) 118, 128
Bsu15I ATCGAT 1 cut(s) 339
Bsu36I CCTNAGG 1 cut(s) 749
BsuRI GGCC 3 cut(s) 275, 515, 1206
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 2 cut(s) 984, 1437
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 8 cut(s) 144, 163, 421, 457, 493, 715, 921, 1474
BtsIMutI CAGTG 1 cut(s) 1326
BveI ACCTGC 1 cut(s) 874
Cac8I GCNNGC 6 cut(s) 18, 79, 107, 1214, 1218, 1434
CfoI GCGC 3 cut(s) 111, 828, 1386
Cfr13I GGNCC 3 cut(s) 274, 781, 1205
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 3 cut(s) 137, 1006, 1013
Csp6I GTAC 6 cut(s) 589, 725, 919, 1101, 1130, 1448
CviQI GTAC 6 cut(s) 589, 725, 919, 1101, 1130, 1448
DdeI CTNAG 8 cut(s) 2, 63, 366, 675, 749, 1138, 1298, 1403
DpnI GATC 5 cut(s) 281, 342, 355, 965, 1401
DpnII GATC 5 cut(s) 279, 340, 353, 963, 1399
EciI GGCGGA 2 cut(s) 152, 333
Eco130I CCWWGG 2 cut(s) 1201, 1437
Eco47I GGWCC 1 cut(s) 781
Eco57I CTGAAG 1 cut(s) 1350
Eco81I CCTNAGG 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 1221
EcoRII CCWGG 1 cut(s) 1162
EcoT14I CCWWGG 2 cut(s) 1201, 1437
EcoT22I ATGCAT 1 cut(s) 572
ErhI CCWWGG 2 cut(s) 1201, 1437
Esp3I CGTCTC 1 cut(s) 42
FaqI GGGAC 4 cut(s) 97, 219, 256, 264
FauI CCCGC 2 cut(s) 74, 144
FauNDI CATATG 1 cut(s) 1251
FbaI TGATCA 1 cut(s) 279
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 5 cut(s) 132, 142, 216, 971, 974
FokI GGATG 8 cut(s) 131, 170, 428, 464, 500, 722, 928, 1481
Fsp4HI GCNGC 5 cut(s) 132, 142, 216, 971, 974
FspAI RTGCGCAY 1 cut(s) 827
FspBI CTAG 6 cut(s) 254, 603, 764, 899, 1233, 1451
FspI TGCGCA 2 cut(s) 827, 1385
GlaI GCGC 3 cut(s) 110, 827, 1385
GluI GCNGC 5 cut(s) 132, 142, 216, 971, 974
GsaI CCCAGC 1 cut(s) 1212
HaeIII GGCC 3 cut(s) 275, 515, 1206
HapII CCGG 1 cut(s) 784
HgaI GACGC 3 cut(s) 137, 1006, 1013
HhaI GCGC 3 cut(s) 111, 828, 1386
Hin1I GRCGYC 1 cut(s) 1005
Hin6I GCGC 3 cut(s) 109, 826, 1384
HinP1I GCGC 3 cut(s) 109, 826, 1384
HincII GTYRAC 3 cut(s) 292, 363, 1230
HindII GTYRAC 3 cut(s) 292, 363, 1230
HindIII AAGCTT 1 cut(s) 1024
HinfI GANTC 4 cut(s) 719, 1145, 1289, 1454
HpaI GTTAAC 1 cut(s) 363
HpaII CCGG 1 cut(s) 784
HphI GGTGA 6 cut(s) 410, 446, 482, 518, 554, 1189
Hpy166II GTNNAC 8 cut(s) 116, 267, 292, 363, 589, 944, 1132, 1230
Hpy188I TCNGA 7 cut(s) 127, 199, 229, 353, 1022, 1150, 1369
Hpy188III TCNNGA 2 cut(s) 179, 1394
Hpy8I GTNNAC 8 cut(s) 116, 267, 292, 363, 589, 944, 1132, 1230
Hpy99I CGWCG 7 cut(s) 274, 521, 941, 958, 1007, 1037, 1048
HpyAV CCTTC 8 cut(s) 377, 413, 449, 485, 521, 659, 1374, 1459
HpyCH4III ACNGT 6 cut(s) 225, 233, 264, 593, 649, 941
HpyCH4IV ACGT 3 cut(s) 118, 288, 1422
HpyCH4V TGCA 7 cut(s) 116, 144, 558, 570, 869, 883, 1068
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 899, 1023, 1133
HpyF3I CTNAG 8 cut(s) 2, 63, 366, 675, 749, 1138, 1298, 1403
HpySE526I ACGT 3 cut(s) 118, 288, 1422
Hsp92I GRCGYC 1 cut(s) 1005
HspAI GCGC 3 cut(s) 109, 826, 1384
Ksp22I TGATCA 1 cut(s) 279
KspAI GTTAAC 1 cut(s) 363
Kzo9I GATC 5 cut(s) 279, 340, 353, 963, 1399
LmnI GCTCC 1 cut(s) 898
Lsp1109I GCAGC 2 cut(s) 118, 128
LweI GCATC 2 cut(s) 153, 747
MaeI CTAG 6 cut(s) 254, 603, 764, 899, 1233, 1451
MaeII ACGT 3 cut(s) 118, 288, 1422
MaeIII GTNAC 5 cut(s) 219, 308, 1177, 1312, 1418
MalI GATC 5 cut(s) 281, 342, 355, 965, 1401
MbiI CCGCTC 1 cut(s) 1329
MboI GATC 5 cut(s) 279, 340, 353, 963, 1399
MboII GAAGA 3 cut(s) 389, 533, 1449
MfeI CAATTG 1 cut(s) 1012
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 3 cut(s) 551, 1012, 1359
MlyI GAGTC 2 cut(s) 1154, 1298
MmeI TCCRAC 1 cut(s) 669
Mph1103I ATGCAT 1 cut(s) 572
MseI TTAA 2 cut(s) 327, 362
MspA1I CMGCKG 4 cut(s) 20, 62, 81, 151
MspI CCGG 1 cut(s) 784
MspR9I CCNGG 2 cut(s) 785, 1164
MunI CAATTG 1 cut(s) 1012
MvaI CCWGG 1 cut(s) 1164
MvnI CGCG 2 cut(s) 111, 215
MwoI GCNNNNNNNGC 4 cut(s) 78, 899, 1023, 1133
NciI CCSGG 1 cut(s) 785
NcoI CCATGG 1 cut(s) 1437
NdeI CATATG 1 cut(s) 1251
NdeII GATC 5 cut(s) 279, 340, 353, 963, 1399
NlaIV GGNNCC 1 cut(s) 1207
NmuCI GTSAC 2 cut(s) 1177, 1418
NsbI TGCGCA 2 cut(s) 827, 1385
NsiI ATGCAT 1 cut(s) 572
NspI RCATGY 3 cut(s) 584, 826, 844
PciI ACATGT 1 cut(s) 580
PfeI GAWTC 2 cut(s) 719, 1454
PkrI GCNGC 5 cut(s) 133, 143, 217, 972, 975
PleI GAGTC 2 cut(s) 1153, 1297
PpsI GAGTC 2 cut(s) 1153, 1297
PscI ACATGT 1 cut(s) 580
PshAI GACNNNNGTC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 1162
PspFI CCCAGC 1 cut(s) 1208
PspGI CCWGG 1 cut(s) 1162
PspN4I GGNNCC 1 cut(s) 1207
PspPI GGNCC 3 cut(s) 274, 781, 1205
RsaI GTAC 6 cut(s) 590, 726, 920, 1102, 1131, 1449
RsaNI GTAC 6 cut(s) 589, 725, 919, 1101, 1130, 1448
SaqAI TTAA 2 cut(s) 327, 362
SatI GCNGC 5 cut(s) 132, 142, 216, 971, 974
Sau3AI GATC 5 cut(s) 279, 340, 353, 963, 1399
Sau96I GGNCC 3 cut(s) 274, 781, 1205
ScaI AGTACT 1 cut(s) 1102
SchI GAGTC 2 cut(s) 1154, 1298
ScrFI CCNGG 2 cut(s) 785, 1164
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 2 cut(s) 153, 747
SinI GGWCC 1 cut(s) 781
SmlI CTYRAG 1 cut(s) 1392
SmoI CTYRAG 1 cut(s) 1392
SpeI ACTAGT 2 cut(s) 253, 1232
Sse9I AATT 3 cut(s) 551, 1012, 1359
SspMI CTAG 6 cut(s) 254, 603, 764, 899, 1233, 1451
StyD4I CCNGG 2 cut(s) 783, 1162
StyI CCWWGG 2 cut(s) 1201, 1437
TaaI ACNGT 6 cut(s) 225, 233, 264, 593, 649, 941
TaiI ACGT 3 cut(s) 121, 291, 1425
TaqI TCGA 6 cut(s) 339, 375, 447, 483, 519, 1270
TasI AATT 3 cut(s) 551, 1012, 1359
TatI WGTACW 3 cut(s) 588, 724, 1100
TauI GCSGC 3 cut(s) 218, 973, 976
TfiI GAWTC 2 cut(s) 719, 1454
Tru1I TTAA 2 cut(s) 327, 362
Tru9I TTAA 2 cut(s) 327, 362
TscAI CASTG 1 cut(s) 1326
TseFI GTSAC 2 cut(s) 1177, 1418
TseI GCWGC 2 cut(s) 131, 141
Tsp45I GTSAC 2 cut(s) 1177, 1418
TspDTI ATGAA 9 cut(s) 396, 432, 440, 468, 504, 540, 726, 1252, 1370
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 1326
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 781
XagI CCTNNNNNAGG 1 cut(s) 1221
XapI RAATTY 1 cut(s) 1359
XceI RCATGY 3 cut(s) 584, 826, 844
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 6 cut(s) 254, 603, 764, 899, 1233, 1451
ZrmI AGTACT 1 cut(s) 1102
Zsp2I ATGCAT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.