Rmu_sc0000446.1_g000024

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000446.1
OG0005505
Physical Location & Seq
Reverse (-)
117001 .. 131180
14180 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2922 bp
atgtcgcaggcagatatcagaaagtggtttatgaaatcgcatgacaaggccaatgcctccaagccggctccggctccggctccggctgcttctgctttgccgaaacagtctacagaccctcaacaacaacagaatgtgcatggaggtgaagaaaattcaggcagaaggaaaaccagcaagtattttcctccaaataaaccaaagcccaatgaggaaaaggaaaccgttgaagttccagcaaagcgaaagactcgacctgatcctgttgaatctagcagaccctcacctgcaaaaaaagttcagaaagttgccgatgatgacgacgacgacgacgattttgttttgcctcaatctaaaaagaaagaagccacgcctagcaagaaactgaagaatgcatctggcatgggaattccacagaacctgacgtctgcagatgaaagtgatgatgatgaagccaaggctcctcgcaaatctggtggtagaggtcgtggtggaagaggtagttcatcggccgcaccagctgctggaagaggcagaggcgctggacggggtgggtttatgaattttggcgaaaggaaagatcctccacacaaaggagaaaaggacgttcctgaaggtgatccaaactgtctagctggtttaactttcgtaataagtggtacacttgatagtttggaaagagaggaggcagaagatttgataaaacgacatggtggtcgtatcactggatctgtcagcaagaaaacgagctatcttttatgtgatgaagatattgagggcaggaaatcctcaaaagccaaagaacttgggacggctttccttactgaggatggattgtttgataagattcgggcatcaattcgtgctaaagcacctgtgaaagaagaaaagaaaccggtggatagtgcacgagaatcatctttgcctaataaaagccctaagaaagtagcattaaagagttcaccagattgcactagcagctccttggcatgtagggtatcccacaaacagtcgccatcagatgcttcccttgctaggcgcaaagagcaaactaccgagcattctgctttgacatggacagaaaaatatagaccaaaggttccaaatgacattattggtaaccagtcactggtaaagcagcttcatgattggttggtacattggcatgagcaattccgtgatactggagttaagaaaaaaggcaataaaccaaacaatacaggtgctaaaaaagctgtactattaagtggaacacccggaatagggaaaacaacgtcagcaaagttggtcagtcagatgcttggtttccaggcaattgaggtaaatgcaagtgacagtcgtgggaaagctgattccaagattgtcaagggaatcggtggaagcaatgcaaactctgttaaagagctcgtcagcaacgaggccctaagcatggatagatctaagcatcccaaaactgtgctgattatggatgaggttgatgggatgtctgctggtgatcggggtggagttgctgatcttattgctagcataaagagttctaaaattcccattatctgcatttgtaatgatcgttacagtcagaaactgaaaagtcttgtgaactactgtttgcttctcagcttccgcaaacccactaaacaacagatggcaaagaggttgaagcaagttgcaaatgctgaaggacttcaagtgaatgagattgctcttgaggaacttgcagaaagagttaacggagacatgcgaatggcacttaatcagttgcactatatgagtctctcaatgtctgtcataaaatatgaagatataaggcaacgcctactaagcagtgcaaaggatgaggatatttcaccattcacagctgttgacaagctgtttggtttcaatgctggaaagttgcggatggatgagcggtttgacctgagcatgagtgatccagatctagtccctcttcttattcaggaaaattatattaactacaggccaagtgcggctgttaaggatgatagtggggttgaacgtatgaacttgatcgcccgtgccgctgagtctattggaaatggggatattatcaatgtacaaattagaaaatatcgccaatggcaactttcccaaagttgttctctgtcatccagcataattccagctgctttgttgcgtgggcaaagggagacacttgagcagggagaaagaaattttaatagatttggaggttggctaggaaagaactcaacattaggcaaaaatctgaggctcttagaagatttgcatttccatcttcttgcatctcgtgaatctagttcagggagggagaccctgcgagttgaataccttcccctacttctgaaacgattgtctgtgccgctgcgtaaattgtcgaaggatgaagctgttcaggaagttgtggagttcatgaatacttactccattagtcaagatgactatgatactattgtagagttatcaaaatttcgggggcatccaaatccgctggatggtgttcagccagctgtaaaagcagctcttacaaaagcatacaaagaaggaagcaaatcaaggatggtacgagttgcagagtttgtcactttccctggaatgaaaaaggctcctaagaagaggatcgcagctattttagaaccatctgacgatgtaactggggagaacaataatgatactttggttctaagtgaagaagaaaattcatctgatacagaggacttggaaagctctgctgttggggagaagctgcaacaggaacttcaaagtttgaataaaaaaggagtgcaagttcaattggatttgaagggtgcaacaaatccaagtgccaagaggacaccagctggaagaggtaaaggtgcttcttctggtgcctctgagaaaaaaggtggccgaggttcagggtctggtgccaaaagaaagagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000280 GO:0000712 GO:0000723 GO:0000731 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006278 GO:0006281 GO:0006283 GO:0006289 GO:0006296 GO:0006297 GO:0006301 GO:0006310 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008047 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010833 GO:0016043 GO:0017076 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019985 GO:0022402 GO:0022414 GO:0030234 GO:0030554 GO:0031056 GO:0031060 GO:0031323 GO:0031326 GO:0031399 GO:0031935 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032268 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033043 GO:0033044 GO:0033260 GO:0033554 GO:0033683 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0035825 GO:0036094 GO:0042221 GO:0042276 GO:0042592 GO:0042769 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0045132 GO:0046483 GO:0048285 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051246 GO:0051252 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051570 GO:0051606 GO:0051716 GO:0060249 GO:0060255 GO:0060968 GO:0061982 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:0097367 GO:0098772 GO:0098813 GO:0140013 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1902275 GO:1903046 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
AAA BRCT RFC1

Protein Analysis

973

Amino Acids

106.31

Weight (kDa)

9.44

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 208 - 281 5.5e-17 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 223 - 271 4.7e-06 twin BRCT domain
AAA_22 PF13401 410 - 500 4.9e-06 AAA domain
AAA PF00004 413 - 526 3.4e-12 ATPase family associated with various cellular activities (AAA)
AAA_lid_RFC1 PF25361 547 - 602 4.3e-08 RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid PF21960 551 - 592 7e-07 RCF1/5-like, AAA+ ATPase lid domain
RFC1 PF08519 684 - 846 9.1e-41 Replication factor RFC1 C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
AasI GACNNNNNNGTC 1 cut(s) 714
AatII GACGTC 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 2 cut(s) 2864, 2903
AccB7I CCANNNNNTGG 2 cut(s) 524, 1129
AccBSI CCGCTC 1 cut(s) 1909
AccI GTMKAC 1 cut(s) 110
AciI CCGC 8 cut(s) 513, 1624, 1897, 1909, 1988, 2040, 2360, 2486
AclWI GGATC 6 cut(s) 254, 575, 614, 736, 1925, 2624
AcoI YGGCCR 2 cut(s) 510, 2884
AcsI RAATTY 7 cut(s) 154, 408, 562, 1542, 2191, 2465, 2695
AcuI CTGAAG 3 cut(s) 407, 633, 1698
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 5 cut(s) 661, 1158, 1239, 2076, 2562
AfiI CCNNNNNNNGG 9 cut(s) 524, 593, 826, 1035, 1129, 1262, 1263, 1429, 2492
AgeI ACCGGT 1 cut(s) 895
AjnI CCWGG 2 cut(s) 1308, 2587
AloI GAACNNNNNNTCC 2 cut(s) 2769, 2801
Alw21I GWGCWC 2 cut(s) 910, 1407
Alw26I GTCTC 4 cut(s) 1728, 1778, 2162, 2303
Alw44I GTGCAC 1 cut(s) 906
AlwI GGATC 6 cut(s) 254, 575, 614, 736, 1925, 2624
AlwNI CAGNNNCTG 5 cut(s) 421, 524, 1129, 1585, 2900
AoxI GGCC 5 cut(s) 48, 510, 1419, 1979, 2884
ApaLI GTGCAC 1 cut(s) 906
ApeKI GCWGC 9 cut(s) 86, 521, 978, 1138, 2144, 2362, 2516, 2621, 2743
ApoI RAATTY 7 cut(s) 154, 408, 562, 1542, 2191, 2465, 2695
ArsI GACNNNNNNTTYG 4 cut(s) 320, 352, 1856, 1888
AsiGI ACCGGT 1 cut(s) 895
Asp700I GAANNNNTTC 3 cut(s) 1683, 2328, 2388
AspLEI GCGC 2 cut(s) 542, 1041
AspS9I GGNCC 1 cut(s) 1420
AsuC2I CCSGG 1 cut(s) 1257
AsuHPI GGTGA 6 cut(s) 158, 276, 629, 954, 1505, 1839
AsuNHI GCTAGC 1 cut(s) 1523
BaeGI GKGCMC 1 cut(s) 910
BaeI ACNNNNGTAYC 6 cut(s) 1173, 1206, 2436, 2469, 2661, 2694
BanI GGYRCC 2 cut(s) 2864, 2903
BanII GRGCYC 1 cut(s) 1407
BarI GAAGNNNNNNTAC 4 cut(s) 1125, 1157, 2839, 2871
BauI CACGAG 2 cut(s) 909, 2286
Bbv12I GWGCWC 2 cut(s) 910, 1407
BbvI GCAGC 9 cut(s) 73, 508, 990, 1150, 2131, 2349, 2528, 2633, 2730
BccI CCATC 9 cut(s) 824, 1024, 1472, 1639, 1894, 2280, 2486, 2551, 2644
BceAI ACGGC 1 cut(s) 828
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciT130I CCWGG 2 cut(s) 1310, 2589
BciVI GTATCC 1 cut(s) 1009
BcnI CCSGG 1 cut(s) 1257
BcoDI GTCTC 4 cut(s) 1728, 1778, 2162, 2303
BfaI CTAG 9 cut(s) 273, 375, 632, 975, 1035, 1524, 1940, 2216, 2295
BfmI CTRYAG 3 cut(s) 111, 429, 1975
BfoI RGCGCY 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 295
BfuI GTATCC 1 cut(s) 1009
BglII AGATCT 2 cut(s) 1436, 1936
Bme1390I CCNGG 3 cut(s) 1257, 1310, 2589
BmgT120I GGNCC 1 cut(s) 1420
BmiI GGNNCC 8 cut(s) 69, 75, 81, 462, 1101, 2604, 2866, 2905
BmrFI CCNGG 3 cut(s) 1257, 1310, 2589
BmrI ACTGGG 1 cut(s) 2661
BmsI GCATC 7 cut(s) 404, 863, 1012, 1287, 1453, 2291, 2485
BmtI GCTAGC 1 cut(s) 1527
BmuI ACTGGG 1 cut(s) 2661
BpmI CTGGAG 1 cut(s) 1206
Bpu10I CCTNAGC 2 cut(s) 1424, 1919
BpuEI CTTGAG 2 cut(s) 1727, 2195
BpuMI CCSGG 1 cut(s) 1257
BsaBI GATNNNNATC 1 cut(s) 1935
BsaHI GRCGYC 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 2303
BsaJI CCNNGG 4 cut(s) 456, 984, 2587, 2887
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 2769, 2799
Bsc4I CCNNNNNNNGG 9 cut(s) 524, 593, 826, 1035, 1129, 1262, 1263, 1429, 2492
Bse118I RCCGGY 2 cut(s) 64, 895
Bse1I ACTGG 5 cut(s) 730, 1123, 1134, 1189, 2656
Bse3DI GCAATG 1 cut(s) 1390
Bse8I GATNNNNATC 1 cut(s) 1935
BseBI CCWGG 2 cut(s) 1310, 2589
BseDI CCNNGG 4 cut(s) 456, 984, 2587, 2887
BseJI GATNNNNATC 1 cut(s) 1935
BseLI CCNNNNNNNGG 9 cut(s) 524, 593, 826, 1035, 1129, 1262, 1263, 1429, 2492
BseMI GCAATG 1 cut(s) 1390
BseMII CTCAG 6 cut(s) 816, 1630, 1910, 2034, 2237, 2862
BseNI ACTGG 5 cut(s) 730, 1123, 1134, 1189, 2656
BseRI GAGGAG 2 cut(s) 453, 698
BseSI GKGCMC 1 cut(s) 910
BseX3I CGGCCG 1 cut(s) 510
BseXI GCAGC 9 cut(s) 73, 508, 990, 1150, 2131, 2349, 2528, 2633, 2730
Bsh1285I CGRYCG 1 cut(s) 513
BshFI GGCC 5 cut(s) 50, 512, 1421, 1981, 2886
BshNI GGYRCC 2 cut(s) 2864, 2903
BshTI ACCGGT 1 cut(s) 895
BsiEI CGRYCG 1 cut(s) 513
BsiHKAI GWGCWC 2 cut(s) 910, 1407
BsiSI CCGG 6 cut(s) 65, 71, 77, 83, 896, 1257
BslFI GGGAC 2 cut(s) 823, 1928
BslI CCNNNNNNNGG 9 cut(s) 524, 593, 826, 1035, 1129, 1262, 1263, 1429, 2492
BsmAI GTCTC 4 cut(s) 1728, 1778, 2162, 2303
BsmFI GGGAC 2 cut(s) 823, 1928
BsmI GAATGC 2 cut(s) 397, 1060
BsnI GGCC 5 cut(s) 50, 512, 1421, 1981, 2886
Bso31I GGTCTC 1 cut(s) 2303
Bsp1286I GDGCHC 2 cut(s) 910, 1407
Bsp1407I TGTACA 1 cut(s) 2074
BspACI CCGC 8 cut(s) 513, 1624, 1897, 1909, 1988, 2040, 2360, 2486
BspANI GGCC 5 cut(s) 50, 512, 1421, 1981, 2886
BspCNI CTCAG 6 cut(s) 817, 1629, 1911, 2035, 2238, 2863
BspHI TCATGA 2 cut(s) 1144, 2409
BspLI GGNNCC 8 cut(s) 69, 75, 81, 462, 1101, 2604, 2866, 2905
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 295
BspOI GCTAGC 1 cut(s) 1527
BspPI GGATC 6 cut(s) 254, 575, 614, 736, 1925, 2624
BspT107I GGYRCC 2 cut(s) 2864, 2903
BspTNI GGTCTC 1 cut(s) 2303
BsrBI CCGCTC 1 cut(s) 1909
BsrDI GCAATG 1 cut(s) 1390
BsrFI RCCGGY 2 cut(s) 64, 895
BsrGI TGTACA 1 cut(s) 2074
BsrI ACTGG 5 cut(s) 730, 1123, 1134, 1189, 2656
BssAI RCCGGY 2 cut(s) 64, 895
BssECI CCNNGG 4 cut(s) 456, 984, 2587, 2887
BssNI GRCGYC 1 cut(s) 425
BssSI CACGAG 2 cut(s) 909, 2286
BssT1I CCWWGG 2 cut(s) 456, 984
Bst2BI CACGAG 2 cut(s) 909, 2286
Bst2UI CCWGG 2 cut(s) 1310, 2589
Bst4CI ACNGT 8 cut(s) 108, 226, 629, 1011, 1337, 1456, 1577, 1607
Bst6I CTCTTC 5 cut(s) 490, 523, 1953, 2606, 2836
BstACI GRCGYC 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 2074
BstC8I GCNNGC 4 cut(s) 9, 66, 1525, 2505
BstEII GGTNACC 1 cut(s) 1118
BstENI CCTNNNNNAGG 1 cut(s) 824
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 2 cut(s) 542, 1041
BstMAI GTCTC 4 cut(s) 1728, 1778, 2162, 2303
BstMCI CGRYCG 1 cut(s) 513
BstNI CCWGG 2 cut(s) 1310, 2589
BstNSI RCATGY 2 cut(s) 993, 1741
BstPI GGTNACC 1 cut(s) 1118
BstSCI CCNGG 3 cut(s) 1255, 1308, 2587
BstSFI CTRYAG 3 cut(s) 111, 429, 1975
BstSLI GKGCMC 1 cut(s) 910
BstV1I GCAGC 9 cut(s) 73, 508, 990, 1150, 2131, 2349, 2528, 2633, 2730
BstX2I RGATCY 4 cut(s) 580, 728, 1436, 1936
BstYI RGATCY 4 cut(s) 580, 728, 1436, 1936
BstZI CGGCCG 1 cut(s) 510
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 5 cut(s) 50, 512, 1421, 1981, 2886
BtsI GCAGTG 1 cut(s) 1831
BtsIMutI CAGTG 3 cut(s) 723, 1127, 1831
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 4 cut(s) 9, 66, 1525, 2505
CaiI CAGNNNCTG 5 cut(s) 421, 524, 1129, 1585, 2900
CciI TCATGA 2 cut(s) 1144, 2409
CfoI GCGC 2 cut(s) 542, 1041
Cfr10I RCCGGY 2 cut(s) 64, 895
Cfr13I GGNCC 1 cut(s) 1420
Csp6I GTAC 5 cut(s) 660, 1157, 1238, 2075, 2561
CspAI ACCGGT 1 cut(s) 895
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviQI GTAC 5 cut(s) 660, 1157, 1238, 2075, 2561
DrdI GACNNNNNNGTC 1 cut(s) 714
DseDI GACNNNNNNGTC 1 cut(s) 714
EaeI YGGCCR 2 cut(s) 510, 2884
EagI CGGCCG 1 cut(s) 510
Eam1104I CTCTTC 5 cut(s) 490, 523, 1953, 2606, 2836
EarI CTCTTC 5 cut(s) 490, 523, 1953, 2606, 2836
Ecl136II GAGCTC 1 cut(s) 1405
EclXI CGGCCG 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 456, 984
Eco24I GRGCYC 1 cut(s) 1407
Eco31I GGTCTC 1 cut(s) 2303
Eco32I GATATC 1 cut(s) 16
Eco52I CGGCCG 1 cut(s) 510
Eco53kI GAGCTC 1 cut(s) 1405
Eco57I CTGAAG 3 cut(s) 407, 633, 1698
Eco91I GGTNACC 1 cut(s) 1118
EcoICRI GAGCTC 1 cut(s) 1405
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoO109I RGGNCCY 1 cut(s) 1420
EcoO65I GGTNACC 1 cut(s) 1118
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 1308, 2587
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 456, 984
EcoT22I ATGCAT 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 1407
ErhI CCWWGG 2 cut(s) 456, 984
FalI AAGNNNNNCTT 2 cut(s) 2505, 2537
FaqI GGGAC 2 cut(s) 823, 1928
FblI GTMKAC 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 1407
FspBI CTAG 9 cut(s) 273, 375, 632, 975, 1035, 1524, 1940, 2216, 2295
GlaI GCGC 2 cut(s) 541, 1040
GsuI CTGGAG 1 cut(s) 1206
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 5 cut(s) 50, 512, 1421, 1981, 2886
HapII CCGG 6 cut(s) 65, 71, 77, 83, 896, 1257
HhaI GCGC 2 cut(s) 542, 1041
Hin1I GRCGYC 1 cut(s) 425
Hin6I GCGC 2 cut(s) 540, 1039
HinP1I GCGC 2 cut(s) 540, 1039
HincII GTYRAC 2 cut(s) 1729, 1864
HindII GTYRAC 2 cut(s) 1729, 1864
HinfI GANTC 9 cut(s) 250, 269, 847, 914, 1352, 1371, 1771, 2045, 2291
HpaI GTTAAC 1 cut(s) 1729
HpaII CCGG 6 cut(s) 65, 71, 77, 83, 896, 1257
HphI GGTGA 6 cut(s) 158, 276, 629, 954, 1505, 1839
Hpy166II GTNNAC 7 cut(s) 111, 662, 908, 962, 1600, 1729, 1864
Hpy188III TCNNGA 9 cut(s) 611, 1145, 1706, 1934, 1958, 2288, 2393, 2410, 2432
Hpy8I GTNNAC 7 cut(s) 111, 662, 908, 962, 1600, 1729, 1864
Hpy99I CGWCG 4 cut(s) 326, 329, 332, 335
HpyAV CCTTC 7 cut(s) 159, 608, 1673, 2339, 2371, 2534, 2794
HpyCH4III ACNGT 8 cut(s) 108, 226, 629, 1011, 1337, 1456, 1577, 1607
HpyCH4IV ACGT 4 cut(s) 425, 606, 1274, 2017
HpySE526I ACGT 4 cut(s) 425, 606, 1274, 2017
Hsp92I GRCGYC 1 cut(s) 425
HspAI GCGC 2 cut(s) 540, 1039
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
KspAI GTTAAC 1 cut(s) 1729
LmnI GCTCC 6 cut(s) 73, 79, 85, 466, 986, 2608
Lsp1109I GCAGC 9 cut(s) 73, 508, 990, 1150, 2131, 2349, 2528, 2633, 2730
LweI GCATC 7 cut(s) 404, 863, 1012, 1287, 1453, 2291, 2485
MaeI CTAG 9 cut(s) 273, 375, 632, 975, 1035, 1524, 1940, 2216, 2295
MaeII ACGT 4 cut(s) 425, 606, 1274, 2017
MaeIII GTNAC 6 cut(s) 1118, 1125, 1331, 1571, 2578, 2647
MbiI CCGCTC 1 cut(s) 1909
MfeI CAATTG 2 cut(s) 1314, 2789
MflI RGATCY 4 cut(s) 580, 728, 1436, 1936
MhlI GDGCHC 2 cut(s) 910, 1407
MlyI GAGTC 3 cut(s) 244, 1780, 2054
Mph1103I ATGCAT 1 cut(s) 397
MroNI GCCGGC 1 cut(s) 64
MroXI GAANNNNTTC 3 cut(s) 1683, 2328, 2388
MslI CAYNNNNRTG 3 cut(s) 144, 1164, 1742
MspA1I CMGCKG 8 cut(s) 521, 1859, 2042, 2144, 2362, 2488, 2507, 2837
MspI CCGG 6 cut(s) 65, 71, 77, 83, 896, 1257
MspR9I CCNGG 3 cut(s) 1257, 1310, 2589
MunI CAATTG 2 cut(s) 1314, 2789
Mva1269I GAATGC 2 cut(s) 397, 1060
MvaI CCWGG 2 cut(s) 1310, 2589
NaeI GCCGGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 1257
NgoMIV GCCGGC 1 cut(s) 64
NheI GCTAGC 1 cut(s) 1523
NlaIV GGNNCC 8 cut(s) 69, 75, 81, 462, 1101, 2604, 2866, 2905
NmeAIII GCCGAG 1 cut(s) 2912
NmuCI GTSAC 3 cut(s) 1125, 1331, 2578
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 2 cut(s) 993, 1741
PagI TCATGA 2 cut(s) 1144, 2409
PaqCI CACCTGC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 3 cut(s) 327, 330, 1413
PctI GAATGC 2 cut(s) 397, 1060
PdiI GCCGGC 1 cut(s) 66
PdmI GAANNNNTTC 3 cut(s) 1683, 2328, 2388
PfeI GAWTC 6 cut(s) 269, 847, 914, 1352, 1371, 2291
PflMI CCANNNNNTGG 2 cut(s) 524, 1129
PinAI ACCGGT 1 cut(s) 895
PleI GAGTC 3 cut(s) 244, 1779, 2053
PpsI GAGTC 3 cut(s) 244, 1779, 2053
Psp124BI GAGCTC 1 cut(s) 1407
Psp6I CCWGG 2 cut(s) 1308, 2587
PspEI GGTNACC 1 cut(s) 1118
PspGI CCWGG 2 cut(s) 1308, 2587
PspN4I GGNNCC 8 cut(s) 69, 75, 81, 462, 1101, 2604, 2866, 2905
PspPI GGNCC 1 cut(s) 1420
PstI CTGCAG 1 cut(s) 433
PstNI CAGNNNCTG 5 cut(s) 421, 524, 1129, 1585, 2900
PsuI RGATCY 4 cut(s) 580, 728, 1436, 1936
PvuII CAGCTG 5 cut(s) 521, 1859, 2144, 2507, 2837
RsaI GTAC 5 cut(s) 661, 1158, 1239, 2076, 2562
RsaNI GTAC 5 cut(s) 660, 1157, 1238, 2075, 2561
RseI CAYNNNNRTG 3 cut(s) 144, 1164, 1742
SacI GAGCTC 1 cut(s) 1407
Sau96I GGNCC 1 cut(s) 1420
SchI GAGTC 3 cut(s) 244, 1780, 2054
ScrFI CCNGG 3 cut(s) 1257, 1310, 2589
SduI GDGCHC 2 cut(s) 910, 1407
SfaNI GCATC 7 cut(s) 404, 863, 1012, 1287, 1453, 2291, 2485
SfcI CTRYAG 3 cut(s) 111, 429, 1975
SmiMI CAYNNNNRTG 3 cut(s) 144, 1164, 1742
SmlI CTYRAG 2 cut(s) 1706, 2174
SmoI CTYRAG 2 cut(s) 1706, 2174
SsiI CCGC 8 cut(s) 513, 1624, 1897, 1909, 1988, 2040, 2360, 2486
SspMI CTAG 9 cut(s) 273, 375, 632, 975, 1035, 1524, 1940, 2216, 2295
SstI GAGCTC 1 cut(s) 1407
StyD4I CCNGG 3 cut(s) 1255, 1308, 2587
StyI CCWWGG 2 cut(s) 456, 984
TaaI ACNGT 8 cut(s) 108, 226, 629, 1011, 1337, 1456, 1577, 1607
TaiI ACGT 4 cut(s) 428, 609, 1277, 2020
TaqI TCGA 2 cut(s) 253, 2375
TatI WGTACW 2 cut(s) 1237, 2074
TauI GCSGC 4 cut(s) 515, 1991, 2042, 2362
TfiI GAWTC 6 cut(s) 269, 847, 914, 1352, 1371, 2291
TscAI CASTG 3 cut(s) 730, 1134, 1831
TseFI GTSAC 3 cut(s) 1125, 1331, 2578
TseI GCWGC 9 cut(s) 86, 521, 978, 1138, 2144, 2362, 2516, 2621, 2743
Tsp45I GTSAC 3 cut(s) 1125, 1331, 2578
TspGWI ACGGA 2 cut(s) 1166, 1746
TspRI CASTG 3 cut(s) 730, 1134, 1831
Van91I CCANNNNNTGG 2 cut(s) 524, 1129
VneI GTGCAC 1 cut(s) 906
XagI CCTNNNNNAGG 1 cut(s) 824
XapI RAATTY 7 cut(s) 154, 408, 562, 1542, 2191, 2465, 2695
XceI RCATGY 2 cut(s) 993, 1741
XmiI GTMKAC 1 cut(s) 110
XmnI GAANNNNTTC 3 cut(s) 1683, 2328, 2388
XspI CTAG 9 cut(s) 273, 375, 632, 975, 1035, 1524, 1940, 2216, 2295
ZraI GACGTC 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.