Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000472.1

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Forward (+)

12973 .. 14058

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000472.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atggagacatttgaagtagagtggatgagtaaggcatcggctgatcaacgtaaaggaagagctggaagaacagggcctggccactgtcaccgcctgtattcttctgcagtatatgataattttcctgagttttccgtacctgaaatatccaaagtccctgttgatggtcttgttcttctactaaagtccatggatatccacgagggatcaaattttccatttcctactcctccagagggtgtggttgaagcagagctttgcttaaatcaccttggagcacttgatgaaaacaaaagagtgacatcttcagggaaatccatggcttggtaccccataagtcctcgccagtcaaggatgctccttactattattcaaatcatgcataagaaaaaaattgatcccaggcctaatttagtgctagcatatgcaactgcagcagctgcagctttgagaattcaggatggaacttacgagcaagaaaatgtaaaagtttctggtgaagaacttttgaatactagcagtgatgctctgtccatagctaatgctttgcggtgctatgaactttccaagaggccatcagaattctgcaatgaaaatgctctacaactgaaaaccatggaagaaatgtccaagctgagaaagcagctgctcaaacctttctttgatcaaaggaggttttccggaggtgatgacgagctacgcaatttttcatggatgtatggaactctggaagatgtacaacatgcttggcattataagaaccttcttgataaaaatcctctttcaaggaatgaggaaatgctcttgaggcaagctaggctggcaagctatctgcgctggttgagcagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

283

Amino Acids

32.31

Weight (kDa)

7.69

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
Acc65I	GGTACC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	327
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccIII	TCCGGA	1 cut(s)	680
AciI	CCGC	2 cut(s)	91, 550
AclWI	GGATC	2 cut(s)	214, 392
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	3 cut(s)	211, 453, 581
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	3 cut(s)	138, 329, 738
AfiI	CCNNNNNNNGG	3 cut(s)	164, 236, 324
AgsI	TTSAA	5 cut(s)	14, 248, 374, 511, 786
AjnI	CCWGG	2 cut(s)	76, 401
Alw21I	GWGCWC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	214, 392
AlwNI	CAGNNNCTG	2 cut(s)	77, 440
Aor13HI	TCCGGA	1 cut(s)	680
AoxI	GGCC	4 cut(s)	74, 79, 404, 572
ApeKI	GCWGC	6 cut(s)	434, 437, 440, 443, 643, 646
ApoI	RAATTY	3 cut(s)	211, 453, 581
Asp718I	GGTACC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	837
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	4 cut(s)	80, 260, 509, 698
AsuNHI	GCTAGC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	6 cut(s)	427, 446, 449, 455, 633, 655
BccI	CCATC	3 cut(s)	158, 455, 583
BciT130I	CCWGG	2 cut(s)	78, 403
BclI	TGATCA	2 cut(s)	43, 664
BfaI	CTAG	3 cut(s)	419, 516, 816
BfmI	CTRYAG	3 cut(s)	105, 432, 441
BisI	GCNGC	6 cut(s)	435, 438, 441, 444, 644, 647
BlsI	GCNGC	6 cut(s)	436, 439, 442, 445, 645, 648
Bme1390I	CCNGG	2 cut(s)	78, 403
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	2 cut(s)	78, 403
BmsI	GCATC	3 cut(s)	44, 345, 514
BmtI	GCTAGC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	826
BsaBI	GATNNNNATC	1 cut(s)	774
BsaJI	CCNNGG	5 cut(s)	189, 271, 318, 401, 615
BsaWI	WCCGGW	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 236, 324
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	595
Bse8I	GATNNNNATC	1 cut(s)	774
BseAI	TCCGGA	1 cut(s)	680
BseBI	CCWGG	2 cut(s)	78, 403
BseDI	CCNNGG	5 cut(s)	189, 271, 318, 401, 615
BseGI	GGATG	4 cut(s)	30, 360, 466, 720
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	3 cut(s)	164, 236, 324
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	117, 626
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	6 cut(s)	427, 446, 449, 455, 633, 655
BshFI	GGCC	4 cut(s)	76, 81, 406, 574
BshNI	GGYRCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	164, 236, 324
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	4 cut(s)	76, 81, 406, 574
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp13I	TCCGGA	1 cut(s)	680
Bsp1407I	TGTACA	1 cut(s)	736
Bsp143I	GATC	4 cut(s)	43, 206, 397, 664
Bsp19I	CCATGG	3 cut(s)	189, 318, 615
BspACI	CCGC	2 cut(s)	91, 550
BspANI	GGCC	4 cut(s)	76, 81, 406, 574
BspCNI	CTCAG	2 cut(s)	118, 627
BspEI	TCCGGA	1 cut(s)	680
BspLI	GGNNCC	1 cut(s)	329
BspMAI	CTGCAG	3 cut(s)	109, 436, 445
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	214, 392
BspQI	GCTCTTC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	595
BsrGI	TGTACA	1 cut(s)	736
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	5 cut(s)	189, 271, 318, 401, 615
BssMI	GATC	4 cut(s)	43, 206, 397, 664
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	4 cut(s)	189, 271, 318, 615
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	2 cut(s)	78, 403
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	736
BstC8I	GCNNGC	4 cut(s)	420, 813, 822, 826
BstDEI	CTNAG	2 cut(s)	126, 635
BstDSI	CCRYGG	3 cut(s)	189, 318, 615
BstF5I	GGATG	4 cut(s)	30, 360, 466, 720
BstHHI	GCGC	1 cut(s)	837
BstKTI	GATC	4 cut(s)	46, 209, 400, 667
BstMBI	GATC	4 cut(s)	43, 206, 397, 664
BstMWI	GCNNNNNNNGC	9 cut(s)	434, 440, 443, 640, 808, 817, 821, 834, 843
BstNI	CCWGG	2 cut(s)	78, 403
BstNSI	RCATGY	1 cut(s)	746
BstSCI	CCNGG	2 cut(s)	76, 401
BstSFI	CTRYAG	3 cut(s)	105, 432, 441
BstV1I	GCAGC	6 cut(s)	427, 446, 449, 455, 633, 655
BsuRI	GGCC	4 cut(s)	76, 81, 406, 574
BtgI	CCRYGG	3 cut(s)	189, 318, 615
BtsCI	GGATG	4 cut(s)	30, 360, 466, 720
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	82, 526
Cac8I	GCNNGC	4 cut(s)	420, 813, 822, 826
CaiI	CAGNNNCTG	2 cut(s)	77, 440
CfoI	GCGC	1 cut(s)	837
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	137, 328, 737
CviAII	CATG	6 cut(s)	190, 319, 379, 616, 711, 743
CviQI	GTAC	3 cut(s)	137, 328, 737
DdeI	CTNAG	2 cut(s)	126, 635
DpnI	GATC	4 cut(s)	45, 208, 399, 666
DpnII	GATC	4 cut(s)	43, 206, 397, 664
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	4 cut(s)	189, 271, 318, 615
Eco147I	AGGCCT	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	2 cut(s)	453, 581
EcoRII	CCWGG	2 cut(s)	76, 401
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	4 cut(s)	189, 271, 318, 615
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	4 cut(s)	189, 271, 318, 615
FaeI	CATG	6 cut(s)	193, 322, 382, 619, 714, 746
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	6 cut(s)	189, 318, 378, 615, 710, 742
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	2 cut(s)	43, 664
Fnu4HI	GCNGC	6 cut(s)	435, 438, 441, 444, 644, 647
FokI	GGATG	4 cut(s)	37, 367, 473, 727
Fsp4HI	GCNGC	6 cut(s)	435, 438, 441, 444, 644, 647
FspBI	CTAG	3 cut(s)	419, 516, 816
GlaI	GCGC	1 cut(s)	836
GluI	GCNGC	6 cut(s)	435, 438, 441, 444, 644, 647
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	76, 81, 406, 574
HapII	CCGG	1 cut(s)	681
HhaI	GCGC	1 cut(s)	837
Hin1II	CATG	6 cut(s)	193, 322, 382, 619, 714, 746
Hin6I	GCGC	1 cut(s)	835
HinP1I	GCGC	1 cut(s)	835
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	4 cut(s)	80, 260, 509, 698
Hpy188I	TCNGA	1 cut(s)	580
Hpy188III	TCNNGA	7 cut(s)	125, 233, 458, 681, 728, 767, 805
HpyAV	CCTTC	1 cut(s)	773
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	107, 382, 428, 434, 443, 588
HpyF10VI	GCNNNNNNNGC	9 cut(s)	434, 440, 443, 640, 808, 817, 821, 834, 843
HpyF3I	CTNAG	2 cut(s)	126, 635
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	6 cut(s)	193, 322, 382, 619, 714, 746
HspAI	GCGC	1 cut(s)	835
Kpn2I	TCCGGA	1 cut(s)	680
KpnI	GGTACC	1 cut(s)	331
Ksp22I	TGATCA	2 cut(s)	43, 664
Kzo9I	GATC	4 cut(s)	43, 206, 397, 664
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	275, 363
Lsp1109I	GCAGC	6 cut(s)	427, 446, 449, 455, 633, 655
LweI	GCATC	3 cut(s)	44, 345, 514
MaeI	CTAG	3 cut(s)	419, 516, 816
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	86, 298
MalI	GATC	4 cut(s)	45, 208, 399, 666
MboI	GATC	4 cut(s)	43, 206, 397, 664
MboII	GAAGA	8 cut(s)	69, 78, 93, 167, 297, 512, 632, 743
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	7 cut(s)	118, 211, 393, 409, 453, 581, 703
MluNI	TGGCCA	1 cut(s)	81
Mox20I	TGGCCA	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	384
MroI	TCCGGA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	440, 646
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	2 cut(s)	78, 403
MvaI	CCWGG	2 cut(s)	78, 403
MwoI	GCNNNNNNNGC	9 cut(s)	434, 440, 443, 640, 808, 817, 821, 834, 843
NcoI	CCATGG	3 cut(s)	189, 318, 615
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	4 cut(s)	43, 206, 397, 664
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	6 cut(s)	193, 322, 382, 619, 714, 746
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	2 cut(s)	86, 298
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	1 cut(s)	746
PceI	AGGCCT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	324
PkrI	GCNGC	6 cut(s)	436, 439, 442, 445, 645, 648
PsiI	TTATAA	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	76, 401
PspGI	CCWGG	2 cut(s)	76, 401
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	3 cut(s)	109, 436, 445
PstNI	CAGNNNCTG	2 cut(s)	77, 440
PvuII	CAGCTG	2 cut(s)	440, 646
RsaI	GTAC	3 cut(s)	138, 329, 738
RsaNI	GTAC	3 cut(s)	137, 328, 737
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	6 cut(s)	435, 438, 441, 444, 644, 647
Sau3AI	GATC	4 cut(s)	43, 206, 397, 664
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	78, 403
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	3 cut(s)	44, 345, 514
SfcI	CTRYAG	3 cut(s)	105, 432, 441
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
Sse9I	AATT	7 cut(s)	118, 211, 393, 409, 453, 581, 703
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	2 cut(s)	91, 550
SspMI	CTAG	3 cut(s)	419, 516, 816
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	76, 401
StyI	CCWWGG	4 cut(s)	189, 271, 318, 615
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	52
TasI	AATT	7 cut(s)	118, 211, 393, 409, 453, 581, 703
TatI	WGTACW	1 cut(s)	736
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	2 cut(s)	89, 526
TseFI	GTSAC	2 cut(s)	86, 298
TseI	GCWGC	6 cut(s)	434, 437, 440, 443, 643, 646
Tsp45I	GTSAC	2 cut(s)	86, 298
TspDTI	ATGAA	4 cut(s)	300, 573, 606, 699
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	2 cut(s)	89, 526
Van91I	CCANNNNNTGG	1 cut(s)	324
XapI	RAATTY	3 cut(s)	211, 453, 581
XceI	RCATGY	1 cut(s)	746
XspI	CTAG	3 cut(s)	419, 516, 816
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.