Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1452996 .. 1453683

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAATGGTGAGTTCACAGCTGCCTCACCATCTGGAAATGCTAATATTGGTGACGAATGTGACTTGTCTTTACACGAAGATGTAAATGTTTCGCCAACTTCAAGCATGAATGATGACAGTGAAAGCACAGAGTCAATGGATAAAGTAAAGGGGAGTCCAAAAGTAAATTCCAGCAGGCCAAGTGAACTCCAGCAGCGCAAGAATGTTGTACATGTATCAAGGCCTAATGAAGTTGAAAATGCAAGGGGTTATCTTCCAATAATAGATATGGAGATGGATATAATGGAGGCTATTAAAGAAAATTCTGTTGTAATTATACGTGGAGAGACCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

4.48

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	166, 301
AfaI	GTAC	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	102, 236
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	176, 221
ApeKI	GCWGC	2 cut(s)	20, 193
ApoI	RAATTY	2 cut(s)	166, 301
AspLEI	GCGC	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	18, 20, 62
BbvI	GCAGC	2 cut(s)	7, 205
BccI	CCATC	2 cut(s)	37, 268
BcoDI	GTCTC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	21, 194
BlsI	GCNGC	2 cut(s)	22, 195
BpmI	CTGGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	7, 205
BshFI	GGCC	2 cut(s)	178, 223
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	178, 223
Bso31I	GGTCTC	1 cut(s)	320
Bsp1407I	TGTACA	1 cut(s)	208
BspANI	GGCC	2 cut(s)	178, 223
BspTNI	GGTCTC	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	7, 205
BsuRI	GGCC	2 cut(s)	178, 223
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	106, 212
CviJI	RGCY	4 cut(s)	20, 178, 223, 290
CviKI_1	RGCY	4 cut(s)	20, 178, 223, 290
CviQI	GTAC	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	320
FaeI	CATG	2 cut(s)	109, 215
FaiI	YATR	5 cut(s)	107, 213, 269, 281, 317
FatI	CATG	2 cut(s)	105, 211
Fnu4HI	GCNGC	2 cut(s)	21, 194
Fsp4HI	GCNGC	2 cut(s)	21, 194
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	2 cut(s)	21, 194
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	178, 223
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	109, 215
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	131, 154
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	3 cut(s)	18, 20, 62
Hpy166II	GTNNAC	2 cut(s)	15, 185
Hpy188III	TCNNGA	1 cut(s)	33
Hpy8I	GTNNAC	2 cut(s)	15, 185
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	2 cut(s)	109, 215
HspAI	GCGC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	18, 160, 184, 203
Lsp1109I	GCAGC	2 cut(s)	7, 205
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	2 cut(s)	50, 59
MboII	GAAGA	2 cut(s)	89, 245
MluCI	AATT	3 cut(s)	166, 301, 312
MlyI	GAGTC	2 cut(s)	140, 163
MnlI	CCTC	2 cut(s)	34, 280
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	330
NlaIII	CATG	2 cut(s)	109, 215
NmuCI	GTSAC	2 cut(s)	50, 59
NspI	RCATGY	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	223
PciI	ACATGT	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	22, 195
PleI	GAGTC	2 cut(s)	139, 162
PpsI	GAGTC	2 cut(s)	139, 162
Ppu21I	YACGTR	1 cut(s)	320
PscI	ACATGT	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	21, 194
SchI	GAGTC	2 cut(s)	140, 163
SetI	ASST	2 cut(s)	22, 322
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	166, 301, 312
SseBI	AGGCCT	1 cut(s)	223
SspI	AATATT	1 cut(s)	46
StuI	AGGCCT	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	322
TasI	AATT	3 cut(s)	166, 301, 312
TatI	WGTACW	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	50, 59
TseI	GCWGC	2 cut(s)	20, 193
Tsp45I	GTSAC	2 cut(s)	50, 59
TspDTI	ATGAA	3 cut(s)	17, 122, 243
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	166, 301
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.