Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

2284467 .. 2284817

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG013600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTGTGGGATAAAGTATGTTGTCGATACTGGAAAAGTAAAGATGAAGAAATACAATCCCTCAAATAGCATGGAGACATTTGAAGTAGAGTGGATGAGTAAGGCATCGGCTGATCAACGTAAAGGAAGAGCTGGAAGAACAGGGCCTGGCCACTGTCACCGCCTGTATTCTTCTGCAGTATATGATAATTTTCCTGAGTTTTCCGTACCTGAAATATCCAAAGTCCCTGTTGATGGTCTTGTTCTTCTACTGAAGTCCATGGATATCCACGAGGTGCATCCAAAAAGTATTTTGGTGCTTATTTTTTGTATAATTTTCAAGATGTCTAAATGTACAGACAATTTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

116

Amino Acids

13.07

Weight (kDa)

8.91

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	272
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	2 cut(s)	207, 334
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	83, 319
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	143, 148
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	150
BauI	CACGAG	1 cut(s)	269
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	113, 286
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	99, 277
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	145, 150
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	145, 150
Bsp1407I	TGTACA	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	112
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	2 cut(s)	145, 150
BspCNI	CTCAG	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	112
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	99, 277
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	145, 150
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	99, 277
BtsIMutI	CAGTG	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	206, 333
CviAII	CATG	3 cut(s)	70, 259, 348
CviJI	RGCY	4 cut(s)	110, 131, 145, 150
CviKI_1	RGCY	4 cut(s)	110, 131, 145, 150
CviQI	GTAC	2 cut(s)	206, 333
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DraIII	CACNNNGTG	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	73, 262, 351
FaiI	YATR	7 cut(s)	18, 71, 181, 183, 260, 311, 349
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	69, 258, 347
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	2 cut(s)	106, 264
HaeIII	GGCC	2 cut(s)	145, 150
Hin1II	CATG	3 cut(s)	73, 262, 351
HphI	GGTGA	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	194, 319
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	176, 277
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	73, 262, 351
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LguI	GCTCTTC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	15, 117, 126, 132, 159, 176, 207, 222, 240
LweI	GCATC	2 cut(s)	113, 286
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	5 cut(s)	58, 138, 147, 162, 236
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	3 cut(s)	187, 312, 340
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	2 cut(s)	70, 265
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	73, 262, 351
NmuCI	GTSAC	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	207, 334
RsaNI	GTAC	2 cut(s)	206, 333
SapI	GCTCTTC	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	4 cut(s)	121, 133, 211, 276
SfaNI	GCATC	2 cut(s)	113, 286
SfcI	CTRYAG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	187, 312, 340
SsiI	CCGC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	187, 312, 340
TatI	WGTACW	1 cut(s)	332
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.