Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

2282966 .. 2283481

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCACAATGTTTCCTGTGTCAAAAAAGAATGGCTTGTCGAGTATGCTCGGTCTTTATGCACTTTACCTGACCCCAAAAAAGGTACCAGACATCGTTATGATCCAATAACAGACCAGGTAGTACATGATGTCGTTCCAACCTTTGGTGATCATTTGTGTGATCTTCCACCGCATCCTCGGGCAATTAGTGAGTTTGAAGATCGAGTGAAAGCTTTCGCTTTTGCTTTGCTTGATGGCCAAGTATTTCCTTACTTAAAACCTGTCAGCAAGTCAAGAGATCCTCCTCTTACTATTGTTTTAAGGCCATTAGAATTAGTTCCAAAACAGATTTGGAATCATCTGGAGAAGCTCAAGACAAAAAACATAGACAGCTGTGCTATGTTACTACAGGTCTGGAAGGTTAATCCCTGGGAATTATATCAAGAAATCGGGGAATGTAAAAAGAGTCTCCACAGTAAATTTGGATCTCTCTGGTTAGATATGCTTAAACAAGTTGGTTCAGACCTCCCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

171

Amino Acids

19.78

Weight (kDa)

8.56

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	3 cut(s)	95, 272, 472
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	2 cut(s)	85, 123
AfiI	CCNNNNNNNGG	2 cut(s)	80, 143
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	2 cut(s)	114, 407
AluBI	AGCT	3 cut(s)	212, 349, 372
AluI	AGCT	3 cut(s)	212, 349, 372
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	3 cut(s)	95, 272, 472
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	2 cut(s)	235, 302
ApoI	RAATTY	1 cut(s)	458
Asp700I	GAANNNNTTC	2 cut(s)	212, 315
Asp718I	GGTACC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	83
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	116, 409
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	386
Bme1390I	CCNGG	2 cut(s)	116, 409
BmeT110I	CYCGRG	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	116, 409
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	176, 407, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 143
BseBI	CCWGG	2 cut(s)	116, 409
BseDI	CCNNGG	3 cut(s)	176, 407, 408
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	80, 143
BseRI	GAGGAG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	237, 304
BshNI	GGYRCC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	80, 143
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	237, 304
BsoBI	CYCGRG	1 cut(s)	177
Bsp143I	GATC	6 cut(s)	100, 148, 160, 199, 277, 464
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	237, 304
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	3 cut(s)	95, 272, 472
BspT107I	GGYRCC	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	176, 407, 408
BssMI	GATC	6 cut(s)	100, 148, 160, 199, 277, 464
Bst2UI	CCWGG	2 cut(s)	116, 409
Bst4CI	ACNGT	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	6 cut(s)	103, 151, 163, 202, 280, 467
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	6 cut(s)	100, 148, 160, 199, 277, 464
BstNI	CCWGG	2 cut(s)	116, 409
BstSCI	CCNGG	2 cut(s)	114, 407
BstSFI	CTRYAG	1 cut(s)	386
BstX2I	RGATCY	2 cut(s)	277, 464
BstYI	RGATCY	2 cut(s)	277, 464
BsuRI	GGCC	2 cut(s)	237, 304
BtsCI	GGATG	1 cut(s)	172
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	84, 122
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	34, 212, 237, 304, 349, 372
CviKI_1	RGCY	6 cut(s)	34, 212, 237, 304, 349, 372
CviQI	GTAC	2 cut(s)	84, 122
DpnI	GATC	6 cut(s)	102, 150, 162, 201, 279, 466
DpnII	GATC	6 cut(s)	100, 148, 160, 199, 277, 464
EaeI	YGGCCR	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	114, 407
FaeI	CATG	1 cut(s)	128
FaiI	YATR	8 cut(s)	45, 58, 99, 126, 365, 380, 418, 482
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	148
FokI	GGATG	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	237, 304
Hin1II	CATG	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	2 cut(s)	334, 445
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	5 cut(s)	273, 341, 352, 394, 422
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	2 cut(s)	4, 60
Hsp92II	CATG	1 cut(s)	128
KpnI	GGTACC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	6 cut(s)	100, 148, 160, 199, 277, 464
LweI	GCATC	1 cut(s)	181
MabI	ACCWGGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	6 cut(s)	102, 150, 162, 201, 279, 466
MboI	GATC	6 cut(s)	100, 148, 160, 199, 277, 464
MboII	GAAGA	2 cut(s)	155, 209
MflI	RGATCY	2 cut(s)	277, 464
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	4 cut(s)	183, 311, 413, 458
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	4 cut(s)	186, 291, 294, 515
Mox20I	TGGCCA	1 cut(s)	237
MroXI	GAANNNNTTC	2 cut(s)	212, 315
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	4 cut(s)	254, 299, 402, 486
MslI	CAYNNNNRTG	2 cut(s)	96, 156
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	116, 409
MvaI	CCWGG	2 cut(s)	116, 409
NdeII	GATC	6 cut(s)	100, 148, 160, 199, 277, 464
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	85
PasI	CCCWGGG	1 cut(s)	408
PdmI	GAANNNNTTC	2 cut(s)	212, 315
PfeI	GAWTC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	143
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	114, 407
PspGI	CCWGG	2 cut(s)	114, 407
PspN4I	GGNNCC	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	277, 464
PvuII	CAGCTG	1 cut(s)	372
RsaI	GTAC	2 cut(s)	85, 123
RsaNI	GTAC	2 cut(s)	84, 122
RseI	CAYNNNNRTG	2 cut(s)	96, 156
SaqAI	TTAA	4 cut(s)	254, 299, 402, 486
Sau3AI	GATC	6 cut(s)	100, 148, 160, 199, 277, 464
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	116, 409
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	96, 156
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	183, 311, 413, 458
SsiI	CCGC	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	114, 407
TaaI	ACNGT	1 cut(s)	455
TaqI	TCGA	2 cut(s)	39, 202
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	4 cut(s)	183, 311, 413, 458
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	4 cut(s)	254, 299, 402, 486
Tru9I	TTAA	4 cut(s)	254, 299, 402, 486
Van91I	CCANNNNNTGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	2 cut(s)	327, 458
XmnI	GAANNNNTTC	2 cut(s)	212, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.