Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1238663 .. 1239127

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTACCTGTGTCAAAAAAGAATGGCTTGTCGAGTATGCTCGGTCTTTATGCACTTTACCTGCCCAAAAAAGGTACCAGACATCGTTATGATCCAATAACAGACCAGGTAGTACATGATGTCGTTCCAACCTTTGGTGATCATTTGTGTGATCTTCCACCGCATCCTCGGGCAATTAGTGAGTTTGAAGATCGAGTGAAAGCTTTCGCTTTTGCTTTGCTTGATGGCCAAGTAATTCCTTGCTTAAAACCTGTTAGCAAGTCAAGAGATCCTCCTCTTACTATTGTTTTAAGGCCATTAGAATTAGTTCCAAAACAGATTTGGAATCATCTGGAGAAGCTCAAGACAAAAAACATAGACAGATGTGCTATGTTACTAGAGGTCTGTAAGGTTAATCCCTGGGAATTGTATCAAGAAATCGGGGAATGTAAAAAGAGTCTCCACAGTAAATATCTCTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

154

Amino Acids

17.53

Weight (kDa)

8.95

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	134
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	86, 263
AcoI	YGGCCR	1 cut(s)	226
AfaI	GTAC	2 cut(s)	76, 114
AfiI	CCNNNNNNNGG	2 cut(s)	71, 134
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	105, 398
AluBI	AGCT	2 cut(s)	203, 340
AluI	AGCT	2 cut(s)	203, 340
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	2 cut(s)	86, 263
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	226, 293
Asp700I	GAANNNNTTC	2 cut(s)	203, 306
Asp718I	GGTACC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	74
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	107, 400
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	107, 400
BmeT110I	CYCGRG	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	107, 400
BmsI	GCATC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	167, 398, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 134
BseBI	CCWGG	2 cut(s)	107, 400
BseDI	CCNNGG	3 cut(s)	167, 398, 399
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	71, 134
BseRI	GAGGAG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	228, 295
BshNI	GGYRCC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	71, 134
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	228, 295
BsoBI	CYCGRG	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	91, 139, 151, 190, 268
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	228, 295
BspLI	GGNNCC	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	86, 263
BspT107I	GGYRCC	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	167, 398, 399
BssMI	GATC	5 cut(s)	91, 139, 151, 190, 268
Bst2UI	CCWGG	2 cut(s)	107, 400
Bst4CI	ACNGT	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	5 cut(s)	94, 142, 154, 193, 271
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	5 cut(s)	91, 139, 151, 190, 268
BstNI	CCWGG	2 cut(s)	107, 400
BstSCI	CCNGG	2 cut(s)	105, 398
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	228, 295
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	75, 113
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	5 cut(s)	27, 203, 228, 295, 340
CviKI_1	RGCY	5 cut(s)	27, 203, 228, 295, 340
CviQI	GTAC	2 cut(s)	75, 113
DpnI	GATC	5 cut(s)	93, 141, 153, 192, 270
DpnII	GATC	5 cut(s)	91, 139, 151, 190, 268
EaeI	YGGCCR	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	105, 398
FaeI	CATG	1 cut(s)	119
FaiI	YATR	6 cut(s)	38, 51, 90, 117, 356, 371
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	139
FokI	GGATG	1 cut(s)	150
FspBI	CTAG	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	228, 295
Hin1II	CATG	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	2 cut(s)	325, 436
HphI	GGTGA	1 cut(s)	149
Hpy188III	TCNNGA	4 cut(s)	264, 332, 343, 413
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	91, 139, 151, 190, 268
LweI	GCATC	1 cut(s)	172
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	3, 372
MalI	GATC	5 cut(s)	93, 141, 153, 192, 270
MboI	GATC	5 cut(s)	91, 139, 151, 190, 268
MboII	GAAGA	2 cut(s)	146, 200
MflI	RGATCY	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	4 cut(s)	174, 234, 302, 404
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	4 cut(s)	177, 282, 285, 373
Mox20I	TGGCCA	1 cut(s)	228
MroXI	GAANNNNTTC	2 cut(s)	203, 306
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	3 cut(s)	245, 290, 393
MslI	CAYNNNNRTG	2 cut(s)	87, 147
Msp20I	TGGCCA	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	107, 400
MvaI	CCWGG	2 cut(s)	107, 400
NdeII	GATC	5 cut(s)	91, 139, 151, 190, 268
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	76
PasI	CCCWGGG	1 cut(s)	399
PdmI	GAANNNNTTC	2 cut(s)	203, 306
PfeI	GAWTC	1 cut(s)	325
PflMI	CCANNNNNTGG	1 cut(s)	134
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	105, 398
PspGI	CCWGG	2 cut(s)	105, 398
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	76, 114
RsaNI	GTAC	2 cut(s)	75, 113
RseI	CAYNNNNRTG	2 cut(s)	87, 147
SaqAI	TTAA	3 cut(s)	245, 290, 393
Sau3AI	GATC	5 cut(s)	91, 139, 151, 190, 268
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	107, 400
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	87, 147
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	174, 234, 302, 404
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	105, 398
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	2 cut(s)	32, 193
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	4 cut(s)	174, 234, 302, 404
TatI	WGTACW	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	245, 290, 393
Tru9I	TTAA	3 cut(s)	245, 290, 393
Van91I	CCANNNNNTGG	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XmnI	GAANNNNTTC	2 cut(s)	203, 306
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.