Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1479 .. 2293

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgcagagtcttgacaaaaatgagcaaggccaaccagtgaaggtacaaaaggaagttgaaaaaaacacatcagttactttggagtcctctcaggggctagactgtggcaaaagagttggcatgaatggtgagttcacagctgcctcaccatctggaaatgctaatattggtgacgaatgtgacttgtctttacacaaagatgtaaatgtttcgccaacttcaagcatgaatgatgacagtgaaagcacagagtcaatggataaagtaaaggggagtccaaaagtaaattccagcaggccaagtgaactccagcagcgcaagaatgttgtacatgtatcaaggcctaatgaagttgaaaatgcaaggggttatcttccaataatagatatggagatggatataatggaggctattaaagaaaattctgttgtaattatacgtggagagaccggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

151

Amino Acids

16.42

Weight (kDa)

4.81

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	286, 421
AfaI	GTAC	2 cut(s)	45, 330
AfiI	CCNNNNNNNGG	1 cut(s)	93
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	59, 222, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	440
AoxI	GGCC	3 cut(s)	28, 296, 341
ApeKI	GCWGC	2 cut(s)	140, 313
ApoI	RAATTY	2 cut(s)	286, 421
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	138, 140, 182
BbvI	GCAGC	2 cut(s)	127, 325
BccI	CCATC	2 cut(s)	157, 388
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	2 cut(s)	141, 314
BlsI	GCNGC	2 cut(s)	142, 315
BpmI	CTGGAG	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	127, 325
BshFI	GGCC	3 cut(s)	30, 298, 343
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	440
BsnI	GGCC	3 cut(s)	30, 298, 343
Bso31I	GGTCTC	1 cut(s)	440
Bsp1407I	TGTACA	1 cut(s)	328
BspANI	GGCC	3 cut(s)	30, 298, 343
BspCNI	CTCAG	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	104, 239
BstAUI	TGTACA	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	335
BstV1I	GCAGC	2 cut(s)	127, 325
BsuRI	GGCC	3 cut(s)	30, 298, 343
BtsIMutI	CAGTG	2 cut(s)	42, 244
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	44, 329
CviAII	CATG	3 cut(s)	121, 226, 332
CviJI	RGCY	6 cut(s)	30, 97, 140, 298, 343, 410
CviKI_1	RGCY	6 cut(s)	30, 97, 140, 298, 343, 410
CviQI	GTAC	2 cut(s)	44, 329
DdeI	CTNAG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	440
FaeI	CATG	3 cut(s)	124, 229, 335
FaiI	YATR	6 cut(s)	122, 227, 333, 389, 401, 437
FatI	CATG	3 cut(s)	120, 225, 331
Fnu4HI	GCNGC	2 cut(s)	141, 314
Fsp4HI	GCNGC	2 cut(s)	141, 314
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	141, 314
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	3 cut(s)	30, 298, 343
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	124, 229, 335
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	4 cut(s)	7, 83, 251, 274
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	3 cut(s)	138, 140, 182
Hpy166II	GTNNAC	2 cut(s)	135, 305
Hpy188III	TCNNGA	2 cut(s)	11, 153
Hpy8I	GTNNAC	2 cut(s)	135, 305
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	104, 239
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	2 cut(s)	4, 362
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	124, 229, 335
HspAI	GCGC	1 cut(s)	316
LpnPI	CCDG	6 cut(s)	48, 77, 138, 280, 304, 323
Lsp1109I	GCAGC	2 cut(s)	127, 325
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	73, 170, 179
MboII	GAAGA	1 cut(s)	365
MluCI	AATT	3 cut(s)	286, 421, 432
MlyI	GAGTC	4 cut(s)	16, 92, 260, 283
MnlI	CCTC	3 cut(s)	97, 154, 400
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	450
NlaIII	CATG	3 cut(s)	124, 229, 335
NmuCI	GTSAC	2 cut(s)	170, 179
NspI	RCATGY	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	343
PciI	ACATGT	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	142, 315
PleI	GAGTC	4 cut(s)	15, 91, 259, 282
PpsI	GAGTC	4 cut(s)	15, 91, 259, 282
Ppu21I	YACGTR	1 cut(s)	440
PscI	ACATGT	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	2 cut(s)	45, 330
RsaNI	GTAC	2 cut(s)	44, 329
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	141, 314
SchI	GAGTC	4 cut(s)	16, 92, 260, 283
SetI	ASST	3 cut(s)	45, 142, 442
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	3 cut(s)	286, 421, 432
SseBI	AGGCCT	1 cut(s)	343
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	104, 239
TaiI	ACGT	1 cut(s)	442
TasI	AATT	3 cut(s)	286, 421, 432
TatI	WGTACW	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	42, 244
TseFI	GTSAC	2 cut(s)	170, 179
TseI	GCWGC	2 cut(s)	140, 313
Tsp45I	GTSAC	2 cut(s)	170, 179
TspDTI	ATGAA	3 cut(s)	137, 242, 363
TspRI	CASTG	2 cut(s)	42, 244
XapI	RAATTY	2 cut(s)	286, 421
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.