Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1796030 .. 1796870

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTGTAGTGGAAGTGAACCTGAGTTGCAAGAGATGCAGAGTCTTGACAAAAATGAGCAGGGCCAACCAGTGATGGTACAAAAGGAAGTTGAAAAAAACACATCAATTACTTTGGAGTCCTCTCAGGGGCTAGACTGTGGCAAAAGAGTTGGCATGAATGGTGAGTTCACAGCTGCCTCACCATCTAGAAATGCTAATATTGGTGACGAATGTGACTTGTCTTTACACGAAGACGTAAATGTTTCGCCAACTTCAAGCATGAATGATGACAGTGAAAGCACAGAGTCAATGGATAAAGTAAAGGGGAGTCCAAAAGTAAATTCCAGCAGGCCAAGTGAACTCCAGCAGCGCAAGAATGTTGTACATGTATCAAGGCCTAATGAAGTTGAAAATGCAAGGGGTTATCTTCCAATAATAGATATGGAGATGGATATAATGGAGGCTATTAAAGAAAATTCTGTTGTAATTATACGTGGAGAGACCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

162

Amino Acids

17.73

Weight (kDa)

4.54

Isoelectric Point (pI)

58.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	319, 454
AfaI	GTAC	2 cut(s)	78, 363
AfiI	CCNNNNNNNGG	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	92, 255, 389
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	473
AoxI	GGCC	3 cut(s)	61, 329, 374
ApeKI	GCWGC	2 cut(s)	173, 346
ApoI	RAATTY	2 cut(s)	319, 454
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	171, 173, 215
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	160, 358
BccI	CCATC	3 cut(s)	67, 190, 421
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	131, 186
BisI	GCNGC	2 cut(s)	174, 347
BlsI	GCNGC	2 cut(s)	175, 348
BmgT120I	GGNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	12, 137
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	160, 358
BshFI	GGCC	3 cut(s)	63, 331, 376
BsiSI	CCGG	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	3 cut(s)	63, 331, 376
Bso31I	GGTCTC	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	361
BspANI	GGCC	3 cut(s)	63, 331, 376
BspCNI	CTCAG	2 cut(s)	13, 136
BspTNI	GGTCTC	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	137, 272
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstAUI	TGTACA	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	21, 123
BstHHI	GCGC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	473
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	160, 358
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	63, 331, 376
BtsIMutI	CAGTG	2 cut(s)	75, 277
Cac8I	GCNNGC	1 cut(s)	329
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	77, 362
CviAII	CATG	3 cut(s)	154, 259, 365
CviJI	RGCY	6 cut(s)	63, 130, 173, 331, 376, 443
CviKI_1	RGCY	6 cut(s)	63, 130, 173, 331, 376, 443
CviQI	GTAC	2 cut(s)	77, 362
DdeI	CTNAG	2 cut(s)	21, 123
Eco147I	AGGCCT	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	473
FaeI	CATG	3 cut(s)	157, 262, 368
FaiI	YATR	6 cut(s)	155, 260, 366, 422, 434, 470
FatI	CATG	3 cut(s)	153, 258, 364
Fnu4HI	GCNGC	2 cut(s)	174, 347
Fsp4HI	GCNGC	2 cut(s)	174, 347
FspBI	CTAG	2 cut(s)	131, 186
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	174, 347
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	63, 331, 376
HapII	CCGG	1 cut(s)	483
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	157, 262, 368
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	4 cut(s)	40, 116, 284, 307
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	3 cut(s)	171, 173, 215
Hpy166II	GTNNAC	3 cut(s)	17, 168, 338
Hpy188III	TCNNGA	2 cut(s)	44, 186
Hpy8I	GTNNAC	3 cut(s)	17, 168, 338
HpyCH4III	ACNGT	2 cut(s)	137, 272
HpyCH4IV	ACGT	2 cut(s)	234, 472
HpyCH4V	TGCA	3 cut(s)	28, 37, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	21, 123
HpySE526I	ACGT	2 cut(s)	234, 472
Hsp92II	CATG	3 cut(s)	157, 262, 368
HspAI	GCGC	1 cut(s)	349
LpnPI	CCDG	7 cut(s)	33, 44, 81, 110, 313, 337, 356
Lsp1109I	GCAGC	2 cut(s)	160, 358
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	2 cut(s)	131, 186
MaeII	ACGT	2 cut(s)	234, 472
MaeIII	GTNAC	2 cut(s)	203, 212
MboII	GAAGA	2 cut(s)	242, 398
MluCI	AATT	4 cut(s)	105, 319, 454, 465
MlyI	GAGTC	4 cut(s)	49, 125, 293, 316
MnlI	CCTC	3 cut(s)	130, 187, 433
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	157, 262, 368
NmuCI	GTSAC	2 cut(s)	203, 212
NspI	RCATGY	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	376
PciI	ACATGT	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	175, 348
PleI	GAGTC	4 cut(s)	48, 124, 292, 315
PpsI	GAGTC	4 cut(s)	48, 124, 292, 315
Ppu21I	YACGTR	1 cut(s)	473
PscI	ACATGT	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	78, 363
RsaNI	GTAC	2 cut(s)	77, 362
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	174, 347
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	4 cut(s)	49, 125, 293, 316
SetI	ASST	4 cut(s)	22, 175, 237, 475
SfaNI	GCATC	1 cut(s)	24
Sse9I	AATT	4 cut(s)	105, 319, 454, 465
SseBI	AGGCCT	1 cut(s)	376
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	131, 186
StuI	AGGCCT	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	137, 272
TaiI	ACGT	2 cut(s)	237, 475
TasI	AATT	4 cut(s)	105, 319, 454, 465
TatI	WGTACW	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	75, 277
TseFI	GTSAC	2 cut(s)	203, 212
TseI	GCWGC	2 cut(s)	173, 346
Tsp45I	GTSAC	2 cut(s)	203, 212
TspDTI	ATGAA	3 cut(s)	170, 275, 396
TspRI	CASTG	2 cut(s)	75, 277
XapI	RAATTY	2 cut(s)	319, 454
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	2 cut(s)	131, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.