Rw4G000060

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
173542 .. 178364
4823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000060.1

Sequence Viewer

Length: 1455 bp
ATGACTAGCAATTGTCTTTCAAGCAGCTCTGGAGGAGCTGAATCAGCTGATAGCAACACAACCATCTTGCCAGATAAGAGAAGGAATAAAAGGAAGAGTGCCAATGAGTGGAAACCTGAGTTGGAAGAGATGCAGAGTCTTGACAAAAATGAGCAAGGCCAACCAGTGAAGGTACAAAAGGAAGTTGAAAAAAACACATCAGTTACTTTGGAGTCCTCTCAGGGGCTAGACTGTGGCAAAAGAGTTGGCATGAATGGTGAGTTCACAGCTGCCTCACCATCTGGAAATGCTAATATTGGTGACGAATGTGACTTGTCTTTACACAAAGATGTAAATGTTTCGCCAACTTCAAGCATGAATGATGACAGTGAAAGCACAGAGTCAATGAGTGACATTTGGTTGAAGCAGTACTCTGTCATCATTCTTGATGAGGTTCATGAGCGGAGCTTGTGCACAGACATACTTATCGGAATGCTTTCACGTGCAATTCCTTTTCGTCAGAAATTCTATGACGAGCAGCAAAATTTATTGCATGAGAGAGTAACTATACGTTCTGAAAACTGGATTTTTCCAGTAAAGCTTGTGCTGATGAGTGCCACCTTGCAAGTGGAAGACTTGGTTAAGCTATTTCCTGTTCCCCCACCGGTTATAGATGTTTCCGGCAGACAGTTTAAAGAAATAACTAGGAATGAGATCAGTGAAGCATTTGATGTCCATGACAACTTAAATGACCATCAAACTGACAGCGACAGATTTTGCTCTGACGATGAATATCATTATGAGCTACGTGCATTTGAAAAGGTCAAGGAGGGAGAACGGCTTGTTGTTGTGGCCACCAATGTGGCCGGAACCTCTAAAACTATACGTGGGATAAAGTATGTTGTCGATACTGGAAAAGTAAAGATGAAGAAATACAATCCCTCAAATAGCATGGAGACATTTGAAGTAGAGTGGATGAGTAAGGCATCGGCTGATCAACGTAAAGGAAGAGCTGGAAGAAAAGGGCCTGGCCACTGTCACCGCCTTTTGAAGATATTTGCACAGAGCACTATGACTGATCAGGATGCAACTTACGAGCAAGAAAGTGTAAAAGTTTCTGGTGAAGAACTTTTGAATACTAGTAGTGATGCTCTGTCCATAGCTAATGCTTTGCGGTGCTATGAACTTTCCAAGAGGCCATCAGAATTCTGCAATGAAAATGCTCTACAACTGAAAACCATGGAAGAAATGTCCAAGCTGAGAAAGCAGCTGCTCAAAGCTTTCTTTGATCAAAGGAGGTTTTCTGGAGGTGATGACGAGCTACACAATTTTTCATGGATGTATGGAACTCTGGAAGATGTACAACGTGCTTGGCATGATAAGAACCTTCTTGATAAAAATCCTCTTTCAAGGAATGAGGAAAGGCTCTTGAGGCAAGCTAGGCTGGCAAGCTATCTGCGCTGGTTGAGCAGATAG

Protein Analysis

484

Amino Acids

55.11

Weight (kDa)

5.66

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 442
AciI CCGC 3 cut(s) 442, 1021, 1153
AcoI YGGCCR 3 cut(s) 831, 843, 1009
AcsI RAATTY 3 cut(s) 503, 523, 1184
AcvI CACGTG 1 cut(s) 482
AfaI GTAC 3 cut(s) 174, 410, 1341
AfiI CCNNNNNNNGG 2 cut(s) 108, 222
AgeI ACCGGT 1 cut(s) 643
AgsI TTSAA 9 cut(s) 21, 188, 351, 403, 797, 944, 1030, 1114, 1389
AhlI ACTAGT 1 cut(s) 1118
AjnI CCWGG 1 cut(s) 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AleI CACNNNNGTG 1 cut(s) 839
Alw21I GWGCWC 2 cut(s) 455, 1049
Alw26I GTCTC 1 cut(s) 929
Alw44I GTGCAC 1 cut(s) 451
AoxI GGCC 6 cut(s) 157, 831, 843, 1004, 1009, 1175
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 5 cut(s) 24, 269, 517, 1246, 1249
ApoI RAATTY 3 cut(s) 503, 523, 1184
AsiGI ACCGGT 1 cut(s) 643
Asp700I GAANNNNTTC 1 cut(s) 475
AspLEI GCGC 1 cut(s) 1440
AspS9I GGNCC 1 cut(s) 1004
AsuHPI GGTGA 6 cut(s) 267, 269, 311, 1010, 1112, 1301
BaeGI GKGCMC 1 cut(s) 455
BalI TGGCCA 2 cut(s) 833, 1011
BbrPI CACGTG 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 2 cut(s) 455, 1049
BbvI GCAGC 5 cut(s) 36, 256, 529, 1236, 1258
BccI CCATC 4 cut(s) 71, 286, 741, 1186
BceAI ACGGC 1 cut(s) 833
BciT130I CCWGG 1 cut(s) 1008
BclI TGATCA 3 cut(s) 973, 1057, 1267
BcoDI GTCTC 1 cut(s) 929
BcuI ACTAGT 1 cut(s) 1118
BfaI CTAG 5 cut(s) 6, 227, 684, 1119, 1419
BisI GCNGC 5 cut(s) 25, 270, 518, 1247, 1250
BlsI GCNGC 5 cut(s) 26, 271, 519, 1248, 1251
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 1008
BmgT120I GGNCC 1 cut(s) 1004
BmiI GGNNCC 1 cut(s) 850
BmrFI CCNGG 1 cut(s) 1008
BmsI GCATC 4 cut(s) 120, 974, 1054, 1117
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 2 cut(s) 51, 1305
BpuEI CTTGAG 1 cut(s) 1429
BsaAI YACGTR 3 cut(s) 482, 788, 866
BsaBI GATNNNNATC 2 cut(s) 771, 1377
BsaJI CCNNGG 1 cut(s) 1218
BsaWI WCCGGW 1 cut(s) 643
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 222
Bse118I RCCGGY 1 cut(s) 643
Bse1I ACTGG 4 cut(s) 164, 566, 572, 895
Bse3DI GCAATG 1 cut(s) 1198
Bse8I GATNNNNATC 2 cut(s) 771, 1377
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 1 cut(s) 1218
BseGI GGATG 3 cut(s) 960, 1069, 1323
BseJI GATNNNNATC 2 cut(s) 771, 1377
BseLI CCNNNNNNNGG 2 cut(s) 108, 222
BseMI GCAATG 1 cut(s) 1198
BseMII CTCAG 3 cut(s) 108, 233, 1229
BseNI ACTGG 4 cut(s) 164, 566, 572, 895
BseRI GAGGAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 5 cut(s) 36, 256, 529, 1236, 1258
BshFI GGCC 6 cut(s) 159, 833, 845, 1006, 1011, 1177
BshTI ACCGGT 1 cut(s) 643
BsiHKAI GWGCWC 2 cut(s) 455, 1049
BsiSI CCGG 3 cut(s) 644, 660, 846
BslI CCNNNNNNNGG 2 cut(s) 108, 222
BsmAI GTCTC 1 cut(s) 929
BsmI GAATGC 1 cut(s) 477
BsnI GGCC 6 cut(s) 159, 833, 845, 1006, 1011, 1177
Bsp1286I GDGCHC 2 cut(s) 455, 1049
Bsp1407I TGTACA 1 cut(s) 1339
Bsp143I GATC 4 cut(s) 693, 973, 1057, 1267
Bsp19I CCATGG 1 cut(s) 1218
BspACI CCGC 3 cut(s) 442, 1021, 1153
BspANI GGCC 6 cut(s) 159, 833, 845, 1006, 1011, 1177
BspCNI CTCAG 3 cut(s) 109, 232, 1230
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 850
BspQI GCTCTTC 1 cut(s) 982
BsrBI CCGCTC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 1198
BsrFI RCCGGY 1 cut(s) 643
BsrGI TGTACA 1 cut(s) 1339
BsrI ACTGG 4 cut(s) 164, 566, 572, 895
BssAI RCCGGY 1 cut(s) 643
BssECI CCNNGG 1 cut(s) 1218
BssMI GATC 4 cut(s) 693, 973, 1057, 1267
BssT1I CCWWGG 1 cut(s) 1218
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 4 cut(s) 233, 368, 669, 1016
Bst6I CTCTTC 3 cut(s) 89, 120, 982
BstAUI TGTACA 1 cut(s) 1339
BstBAI YACGTR 3 cut(s) 482, 788, 866
BstC8I GCNNGC 3 cut(s) 1416, 1425, 1429
BstDEI CTNAG 3 cut(s) 117, 219, 1238
BstDSI CCRYGG 1 cut(s) 1218
BstF5I GGATG 3 cut(s) 960, 1069, 1323
BstHHI GCGC 1 cut(s) 1440
BstKTI GATC 4 cut(s) 696, 976, 1060, 1270
BstMAI GTCTC 1 cut(s) 929
BstMBI GATC 4 cut(s) 693, 973, 1057, 1267
BstMWI GCNNNNNNNGC 7 cut(s) 44, 1243, 1411, 1420, 1424, 1437, 1446
BstNI CCWGG 1 cut(s) 1008
BstSCI CCNGG 1 cut(s) 1006
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 5 cut(s) 36, 256, 529, 1236, 1258
BstV2I GAAGAC 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 841
BsuRI GGCC 6 cut(s) 159, 833, 845, 1006, 1011, 1177
BtgI CCRYGG 1 cut(s) 1218
BtsCI GGATG 3 cut(s) 960, 1069, 1323
BtsIMutI CAGTG 4 cut(s) 171, 373, 703, 1012
Cac8I GCNNGC 3 cut(s) 1416, 1425, 1429
CciI TCATGA 1 cut(s) 436
CfoI GCGC 1 cut(s) 1440
Cfr10I RCCGGY 1 cut(s) 643
Cfr13I GGNCC 1 cut(s) 1004
Csp6I GTAC 3 cut(s) 173, 409, 1340
CspAI ACCGGT 1 cut(s) 643
CviAII CATG 9 cut(s) 250, 355, 437, 533, 716, 931, 1219, 1314, 1355
CviQI GTAC 3 cut(s) 173, 409, 1340
DdeI CTNAG 3 cut(s) 117, 219, 1238
DpnI GATC 4 cut(s) 695, 975, 1059, 1269
DpnII GATC 4 cut(s) 693, 973, 1057, 1267
DraI TTTAAA 1 cut(s) 673
EaeI YGGCCR 3 cut(s) 831, 843, 1009
Eam1104I CTCTTC 3 cut(s) 89, 120, 982
EarI CTCTTC 3 cut(s) 89, 120, 982
Eco130I CCWWGG 1 cut(s) 1218
Eco72I CACGTG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 1184
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 1 cut(s) 1218
ErhI CCWWGG 1 cut(s) 1218
FaeI CATG 9 cut(s) 253, 358, 440, 536, 719, 934, 1222, 1317, 1358
FatI CATG 9 cut(s) 249, 354, 436, 532, 715, 930, 1218, 1313, 1354
FbaI TGATCA 3 cut(s) 973, 1057, 1267
Fnu4HI GCNGC 5 cut(s) 25, 270, 518, 1247, 1250
FokI GGATG 3 cut(s) 967, 1076, 1330
Fsp4HI GCNGC 5 cut(s) 25, 270, 518, 1247, 1250
FspBI CTAG 5 cut(s) 6, 227, 684, 1119, 1419
GlaI GCGC 1 cut(s) 1439
GluI GCNGC 5 cut(s) 25, 270, 518, 1247, 1250
GsuI CTGGAG 2 cut(s) 51, 1305
HaeIII GGCC 6 cut(s) 159, 833, 845, 1006, 1011, 1177
HapII CCGG 3 cut(s) 644, 660, 846
HhaI GCGC 1 cut(s) 1440
Hin1II CATG 9 cut(s) 253, 358, 440, 536, 719, 934, 1222, 1317, 1358
Hin6I GCGC 1 cut(s) 1438
HinP1I GCGC 1 cut(s) 1438
HindIII AAGCTT 2 cut(s) 578, 1257
HinfI GANTC 4 cut(s) 41, 136, 212, 380
HpaII CCGG 3 cut(s) 644, 660, 846
HphI GGTGA 6 cut(s) 267, 269, 311, 1010, 1112, 1301
Hpy166II GTNNAC 2 cut(s) 264, 453
Hpy188I TCNGA 5 cut(s) 470, 501, 556, 763, 1183
Hpy8I GTNNAC 2 cut(s) 264, 453
HpyAV CCTTC 3 cut(s) 75, 163, 1376
HpyCH4III ACNGT 4 cut(s) 233, 368, 669, 1016
HpyCH4IV ACGT 6 cut(s) 481, 550, 787, 865, 979, 1345
HpyCH4V TGCA 9 cut(s) 133, 453, 485, 532, 604, 791, 1040, 1067, 1191
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 1243, 1411, 1420, 1424, 1437, 1446
HpyF3I CTNAG 3 cut(s) 117, 219, 1238
HpySE526I ACGT 6 cut(s) 481, 550, 787, 865, 979, 1345
Hsp92II CATG 9 cut(s) 253, 358, 440, 536, 719, 934, 1222, 1317, 1358
HspAI GCGC 1 cut(s) 1438
Ksp22I TGATCA 3 cut(s) 973, 1057, 1267
Kzo9I GATC 4 cut(s) 693, 973, 1057, 1267
LguI GCTCTTC 1 cut(s) 982
LmnI GCTCC 2 cut(s) 35, 444
Lsp1109I GCAGC 5 cut(s) 36, 256, 529, 1236, 1258
LweI GCATC 4 cut(s) 120, 974, 1054, 1117
MaeI CTAG 5 cut(s) 6, 227, 684, 1119, 1419
MaeII ACGT 6 cut(s) 481, 550, 787, 865, 979, 1345
MaeIII GTNAC 6 cut(s) 202, 299, 308, 389, 541, 1016
MalI GATC 4 cut(s) 695, 975, 1059, 1269
MbiI CCGCTC 1 cut(s) 442
MboI GATC 4 cut(s) 693, 973, 1057, 1267
MfeI CAATTG 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 455, 1049
MlsI TGGCCA 2 cut(s) 833, 1011
MluCI AATT 6 cut(s) 10, 486, 503, 523, 1184, 1306
MluNI TGGCCA 2 cut(s) 833, 1011
MlyI GAGTC 3 cut(s) 145, 221, 389
MmeI TCCRAC 1 cut(s) 102
Mox20I TGGCCA 2 cut(s) 833, 1011
MroXI GAANNNNTTC 1 cut(s) 475
MscI TGGCCA 2 cut(s) 833, 1011
MseI TTAA 3 cut(s) 621, 672, 725
MslI CAYNNNNRTG 2 cut(s) 327, 839
Msp20I TGGCCA 2 cut(s) 833, 1011
MspA1I CMGCKG 3 cut(s) 47, 269, 1249
MspI CCGG 3 cut(s) 644, 660, 846
MspR9I CCNGG 1 cut(s) 1008
MunI CAATTG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 477
MvaI CCWGG 1 cut(s) 1008
MwoI GCNNNNNNNGC 7 cut(s) 44, 1243, 1411, 1420, 1424, 1437, 1446
NcoI CCATGG 1 cut(s) 1218
NdeII GATC 4 cut(s) 693, 973, 1057, 1267
NlaIII CATG 9 cut(s) 253, 358, 440, 536, 719, 934, 1222, 1317, 1358
NlaIV GGNNCC 1 cut(s) 850
NmuCI GTSAC 4 cut(s) 299, 308, 389, 1016
OliI CACNNNNGTG 1 cut(s) 839
PagI TCATGA 1 cut(s) 436
PciSI GCTCTTC 1 cut(s) 982
PctI GAATGC 1 cut(s) 477
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 108
PinAI ACCGGT 1 cut(s) 643
PkrI GCNGC 5 cut(s) 26, 271, 519, 1248, 1251
PleI GAGTC 3 cut(s) 144, 220, 388
PmaCI CACGTG 1 cut(s) 482
PmlI CACGTG 1 cut(s) 482
PpsI GAGTC 3 cut(s) 144, 220, 388
Ppu21I YACGTR 3 cut(s) 482, 788, 866
Psp6I CCWGG 1 cut(s) 1006
PspCI CACGTG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 1 cut(s) 850
PspPI GGNCC 1 cut(s) 1004
PvuII CAGCTG 3 cut(s) 47, 269, 1249
RsaI GTAC 3 cut(s) 174, 410, 1341
RsaNI GTAC 3 cut(s) 173, 409, 1340
RseI CAYNNNNRTG 2 cut(s) 327, 839
SapI GCTCTTC 1 cut(s) 982
SaqAI TTAA 3 cut(s) 621, 672, 725
SatI GCNGC 5 cut(s) 25, 270, 518, 1247, 1250
Sau3AI GATC 4 cut(s) 693, 973, 1057, 1267
Sau96I GGNCC 1 cut(s) 1004
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 3 cut(s) 145, 221, 389
ScrFI CCNGG 1 cut(s) 1008
SduI GDGCHC 2 cut(s) 455, 1049
SfaNI GCATC 4 cut(s) 120, 974, 1054, 1117
SmiMI CAYNNNNRTG 2 cut(s) 327, 839
SmlI CTYRAG 1 cut(s) 1408
SmoI CTYRAG 1 cut(s) 1408
SpeI ACTAGT 1 cut(s) 1118
Sse9I AATT 6 cut(s) 10, 486, 503, 523, 1184, 1306
SsiI CCGC 3 cut(s) 442, 1021, 1153
SspI AATATT 1 cut(s) 295
SspMI CTAG 5 cut(s) 6, 227, 684, 1119, 1419
StyD4I CCNGG 1 cut(s) 1006
StyI CCWWGG 1 cut(s) 1218
TaaI ACNGT 4 cut(s) 233, 368, 669, 1016
TaiI ACGT 6 cut(s) 484, 553, 790, 868, 982, 1348
TaqI TCGA 1 cut(s) 885
TasI AATT 6 cut(s) 10, 486, 503, 523, 1184, 1306
TatI WGTACW 2 cut(s) 408, 1339
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 3 cut(s) 621, 672, 725
Tru9I TTAA 3 cut(s) 621, 672, 725
TscAI CASTG 4 cut(s) 171, 373, 703, 1019
TseFI GTSAC 4 cut(s) 299, 308, 389, 1016
TseI GCWGC 5 cut(s) 24, 269, 517, 1246, 1249
Tsp45I GTSAC 4 cut(s) 299, 308, 389, 1016
TspDTI ATGAA 8 cut(s) 266, 371, 425, 783, 920, 1176, 1209, 1302
TspRI CASTG 4 cut(s) 171, 373, 703, 1019
Van91I CCANNNNNTGG 1 cut(s) 108
VneI GTGCAC 1 cut(s) 451
XapI RAATTY 3 cut(s) 503, 523, 1184
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 5 cut(s) 6, 227, 684, 1119, 1419
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.