Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1236601 .. 1242677

Gene Structure 6077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGTTGAGGAATCTGATGAACCTGTAGGAGCTCAGCAGACAGAGCAGGTTGAGACCGATGCTTCCGGTTCGGCCTTCAAGGTTAGGAGTTCCGAATCTAGCCCACATGTTCATACTGCACCAGTGGAACCTAAGGAGGAGAAGGAAAACACACTTCTGCTATCAAAAAGCACCGAGGCTTTAGTGAAATATACGATTCCAGAATGTGCATATGCTCTTCTGCAGTCATCACAAAATATTGGCCAGGTTGAATCAAGAAAGAGAAAACGAAGCAGAGCCCTAGTATTCTCCAAAGCTGGAATTGAAGTTTCCCATGCTGACCAACCATTTAAGAAGATAGATTGTGACGAAATGTGTAGTGGAAGTGAACCTGAGTTGGAAGAGATGCAGAGTCTTGACAAAAATGAGCAGGGCCAACCAGTGATGGTACAAAAGGAAGTTGAAAAAAAACACATCAATTACTTTGGAGTCCTCTCAGGGGCTAGACTGTGCCAAAAGAGTTGGCATGAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

172

Amino Acids

19.24

Weight (kDa)

5.22

Isoelectric Point (pI)

69.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	244
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	481
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	82, 254, 308, 446
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	35, 299
AluI	AGCT	2 cut(s)	35, 299
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	50
AoxI	GGCC	3 cut(s)	75, 244, 415
AspS9I	GGNCC	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	246
BanII	GRGCYC	2 cut(s)	37, 283
Bbv12I	GWGCWC	1 cut(s)	37
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	3 cut(s)	102, 284, 486
BfmI	CTRYAG	2 cut(s)	27, 224
BfuAI	ACCTGC	1 cut(s)	40
BlpI	GCTNAGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	52, 378
Bpu1102I	GCTNAGC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	125, 422
Bse21I	CCTNAGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	3 cut(s)	50, 366, 492
BseNI	ACTGG	2 cut(s)	125, 422
BseRI	GAGGAG	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	77, 246, 417
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	77, 246, 417
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	37, 283
Bsp1720I	GCTNAGC	1 cut(s)	36
BspANI	GGCC	3 cut(s)	77, 246, 417
BspCNI	CTCAG	3 cut(s)	49, 367, 491
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	40
BspQI	GCTCTTC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	125, 422
BssECI	CCNNGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	492
Bst6I	CTCTTC	2 cut(s)	225, 378
BstDEI	CTNAG	4 cut(s)	36, 135, 375, 478
BstMAI	GTCTC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	27, 224
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	77, 246, 417
BtsIMutI	CAGTG	2 cut(s)	132, 429
BveI	ACCTGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	3 cut(s)	110, 317, 509
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	4 cut(s)	36, 135, 375, 478
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	225, 378
EarI	CTCTTC	2 cut(s)	225, 378
Ecl136II	GAGCTC	1 cut(s)	35
Eco24I	GRGCYC	2 cut(s)	37, 283
Eco31I	GGTCTC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	37, 283
FaeI	CATG	3 cut(s)	113, 320, 512
FaiI	YATR	7 cut(s)	111, 117, 195, 214, 216, 318, 510
FatI	CATG	3 cut(s)	109, 316, 508
FauNDI	CATATG	1 cut(s)	214
FriOI	GRGCYC	2 cut(s)	37, 283
FspBI	CTAG	3 cut(s)	102, 284, 486
HaeIII	GGCC	3 cut(s)	77, 246, 417
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	3 cut(s)	113, 320, 512
HinfI	GANTC	6 cut(s)	14, 98, 199, 254, 394, 471
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	19, 97
Hpy188III	TCNNGA	3 cut(s)	203, 258, 398
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	88, 139
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4V	TGCA	4 cut(s)	122, 212, 226, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	4 cut(s)	36, 135, 375, 478
Hsp92II	CATG	3 cut(s)	113, 320, 512
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	32
LweI	GCATC	2 cut(s)	52, 378
MaeI	CTAG	3 cut(s)	102, 284, 486
MaeIII	GTNAC	1 cut(s)	347
MboII	GAAGA	3 cut(s)	212, 349, 395
MhlI	GDGCHC	2 cut(s)	37, 283
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	2 cut(s)	303, 460
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	2 cut(s)	403, 480
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	4 cut(s)	4, 133, 172, 485
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeI	CATATG	1 cut(s)	214
NlaIII	CATG	3 cut(s)	113, 320, 512
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	113
PciI	ACATGT	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	225
PfeI	GAWTC	4 cut(s)	14, 98, 199, 254
PleI	GAGTC	2 cut(s)	402, 479
PpsI	GAGTC	2 cut(s)	402, 479
PscI	ACATGT	1 cut(s)	109
Psp124BI	GAGCTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	228
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	403, 480
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	37, 283
SetI	ASST	8 cut(s)	28, 37, 54, 87, 136, 252, 301, 376
SfaNI	GCATC	2 cut(s)	52, 378
SfcI	CTRYAG	2 cut(s)	27, 224
Sse9I	AATT	2 cut(s)	303, 460
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	3 cut(s)	102, 284, 486
SstI	GAGCTC	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	492
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	303, 460
TfiI	GAWTC	4 cut(s)	14, 98, 199, 254
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	2 cut(s)	132, 429
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	36, 104
TspRI	CASTG	2 cut(s)	132, 429
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	3 cut(s)	102, 284, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.