Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1249625 .. 1253087

Gene Structure 3463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGTTGTGTACAGAAAATTTTGCACAGCCTTTGGACTTGAGCTTTGGAGGAGCTGAATCAGCTGATAGCAACACAACCATCTTGCCAGATAAGAGAAGGAATAAAAGGAAGGGTGCCAATGAGGAGGAGAAGGAAAACACACTTCTGCTATCAAAAAGCACCGAGGCTTTAGTGAAATATACGATTCCAGAAGGTGCATATGCTCTTCTGCAGTCATCACAAAATATTGGCCAGCTGGTTGAATCAAGAAAGAGAAAACGAAGCAAAGCCCTAGTATTCTCCAAAGCTGGAATTGAAGTTTCCCATGCTGACCAACCATTTAAGAAGATAGATTCTGCCTCACCATCTGGAAATGCTAATATTGGTGACGAATGTGAATTGTCTTTACACGAAGATGTAAATGTTTCGCCAACTTCAAGCATGAATGATGACAGTGAAAGCACAGAGTCAATGGATAAAGTAAAGGGGAGTCCAAAAGTACATTCCAGCAGGCCAAGTGAACTCCAGCAGCGCAAGAATGTTGTACATGTATCAAGGCCTAATGAAGTTGAAAATGCAAGGGGTTATCTTCCAATAATAGATATGGAGATGGATATAATGGAGGCTATAAAAGAAAATTCTGTTAACTGCTATTATAGGTGTTACTCAAGTACTCAACCCCGTGTTCTTGAAGTCCGTGCGACTGTTAAGCACGTAACATATGAGGTCTGCATTTGGGTAAAGAGGTTGGCTTTCAAGTCAGGTGATTTCCCCCGCTTGTCCGAAGTCAATGAGGTGAAGAGACCGGCTATTTGGCAGCTTGATGGTTCTTCACGAGCTTGGGAGACTTCGAGCTTTGGAGAGGTTTCTTCCGTCCGCTTGCTTCCCTCTCGTCCGTCGTGTCCTCGATGGTGTACTTGGCTCAAGGGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

305

Amino Acids

34.16

Weight (kDa)

6.56

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	116
AciI	CCGC	2 cut(s)	757, 859
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	19, 619
AfaI	GTAC	5 cut(s)	13, 483, 528, 655, 898
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	6 cut(s)	245, 299, 420, 554, 674, 739
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AluBI	AGCT	8 cut(s)	45, 56, 65, 238, 290, 802, 821, 837
AluI	AGCT	8 cut(s)	45, 56, 65, 238, 290, 802, 821, 837
Alw26I	GTCTC	2 cut(s)	778, 821
AoxI	GGCC	3 cut(s)	232, 494, 539
ApeKI	GCWGC	2 cut(s)	511, 799
ApoI	RAATTY	2 cut(s)	19, 619
ArsI	GACNNNNNNTTYG	4 cut(s)	29, 61, 777, 809
AspLEI	GCGC	1 cut(s)	516
AsuHPI	GGTGA	4 cut(s)	336, 380, 758, 790
BalI	TGGCCA	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	116
BauI	CACGAG	1 cut(s)	816
BbvI	GCAGC	2 cut(s)	523, 811
BccI	CCATC	5 cut(s)	89, 355, 586, 800, 885
BcoDI	GTCTC	2 cut(s)	778, 821
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	512, 800
BlsI	GCNGC	2 cut(s)	513, 801
BmcAI	AGTACT	1 cut(s)	655
BmiI	GGNNCC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	491
BpuEI	CTTGAG	3 cut(s)	61, 634, 890
BsaAI	YACGTR	1 cut(s)	697
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	787
BseDI	CCNNGG	1 cut(s)	165
BseRI	GAGGAG	3 cut(s)	66, 140, 143
BseXI	GCAGC	2 cut(s)	523, 811
BshFI	GGCC	3 cut(s)	234, 496, 541
BshNI	GGYRCC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	788
BsmAI	GTCTC	2 cut(s)	778, 821
BsnI	GGCC	3 cut(s)	234, 496, 541
Bso31I	GGTCTC	1 cut(s)	778
Bsp1407I	TGTACA	2 cut(s)	11, 526
BspACI	CCGC	2 cut(s)	757, 859
BspANI	GGCC	3 cut(s)	234, 496, 541
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	787
BsrGI	TGTACA	2 cut(s)	11, 526
BssAI	RCCGGY	1 cut(s)	787
BssECI	CCNNGG	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	816
Bst2BI	CACGAG	1 cut(s)	816
Bst4CI	ACNGT	2 cut(s)	437, 688
Bst6I	CTCTTC	2 cut(s)	213, 776
BstAUI	TGTACA	2 cut(s)	11, 526
BstBAI	YACGTR	1 cut(s)	697
BstC8I	GCNNGC	3 cut(s)	236, 494, 863
BstHHI	GCGC	1 cut(s)	516
BstMAI	GTCTC	2 cut(s)	778, 821
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	523, 811
BsuRI	GGCC	3 cut(s)	234, 496, 541
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	3 cut(s)	236, 494, 863
CfoI	GCGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	787
Csp6I	GTAC	5 cut(s)	12, 482, 527, 654, 897
CviAII	CATG	3 cut(s)	308, 424, 530
CviQI	GTAC	5 cut(s)	12, 482, 527, 654, 897
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	213, 776
EarI	CTCTTC	2 cut(s)	213, 776
Eco147I	AGGCCT	1 cut(s)	541
Eco31I	GGTCTC	1 cut(s)	778
FaeI	CATG	3 cut(s)	311, 427, 533
FatI	CATG	3 cut(s)	307, 423, 529
FauI	CCCGC	1 cut(s)	764
FauNDI	CATATG	2 cut(s)	202, 703
Fnu4HI	GCNGC	2 cut(s)	512, 800
Fsp4HI	GCNGC	2 cut(s)	512, 800
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	2 cut(s)	512, 800
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	3 cut(s)	234, 496, 541
HapII	CCGG	1 cut(s)	788
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	3 cut(s)	311, 427, 533
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	6 cut(s)	59, 187, 245, 335, 449, 472
HpaI	GTTAAC	1 cut(s)	628
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	4 cut(s)	336, 380, 758, 790
Hpy166II	GTNNAC	4 cut(s)	12, 503, 628, 897
Hpy188I	TCNGA	1 cut(s)	766
Hpy188III	TCNNGA	5 cut(s)	191, 249, 351, 671, 816
Hpy8I	GTNNAC	4 cut(s)	12, 503, 628, 897
Hpy99I	CGWCG	1 cut(s)	883
HpyAV	CCTTC	4 cut(s)	93, 106, 127, 188
HpyCH4III	ACNGT	2 cut(s)	437, 688
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	5 cut(s)	26, 200, 214, 560, 714
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	3 cut(s)	311, 427, 533
HspAI	GCGC	1 cut(s)	514
KspAI	GTTAAC	1 cut(s)	628
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	523, 811
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	3 cut(s)	368, 644, 697
MboII	GAAGA	7 cut(s)	200, 340, 407, 563, 793, 804, 843
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	4 cut(s)	19, 294, 380, 619
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	458, 481
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	3 cut(s)	324, 627, 690
MslI	CAYNNNNRTG	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	234
MspA1I	CMGCKG	2 cut(s)	65, 238
MspI	CCGG	1 cut(s)	788
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeI	CATATG	2 cut(s)	202, 703
NlaIII	CATG	3 cut(s)	311, 427, 533
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	533
PceI	AGGCCT	1 cut(s)	541
PciI	ACATGT	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	213
PfeI	GAWTC	4 cut(s)	59, 187, 245, 335
PkrI	GCNGC	2 cut(s)	513, 801
PleI	GAGTC	2 cut(s)	457, 480
PpsI	GAGTC	2 cut(s)	457, 480
Ppu21I	YACGTR	1 cut(s)	697
PscI	ACATGT	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	216
PvuII	CAGCTG	2 cut(s)	65, 238
RsaI	GTAC	5 cut(s)	13, 483, 528, 655, 898
RsaNI	GTAC	5 cut(s)	12, 482, 527, 654, 897
RseI	CAYNNNNRTG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	324, 627, 690
SatI	GCNGC	2 cut(s)	512, 800
ScaI	AGTACT	1 cut(s)	655
SchI	GAGTC	2 cut(s)	458, 481
SfcI	CTRYAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	3 cut(s)	40, 649, 905
SmoI	CTYRAG	3 cut(s)	40, 649, 905
Sse9I	AATT	4 cut(s)	19, 294, 380, 619
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	2 cut(s)	757, 859
SspI	AATATT	2 cut(s)	229, 364
SspMI	CTAG	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	541
TaaI	ACNGT	2 cut(s)	437, 688
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	2 cut(s)	833, 889
TasI	AATT	4 cut(s)	19, 294, 380, 619
TatI	WGTACW	5 cut(s)	11, 481, 526, 653, 896
TfiI	GAWTC	4 cut(s)	59, 187, 245, 335
Tru1I	TTAA	3 cut(s)	324, 627, 690
Tru9I	TTAA	3 cut(s)	324, 627, 690
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	511, 799
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	440, 561
TspGWI	ACGGA	3 cut(s)	668, 844, 867
TspRI	CASTG	1 cut(s)	442
XapI	RAATTY	2 cut(s)	19, 619
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.