Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

2286267 .. 2286705

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG013900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTGTAGTGGAAGTGAAACTGAGTTGGAAGAGATGCAGAGTCTTGACAAAAATAAGCAGGGCCAACCAGAGATGGTACAAAAGGAAGTTGAAAAAAACACATCAATTACTTTGGAGTCCTCTCAGGGGCTAGACTGTGTCAAAAGAGTTGGCATGAATGGTGAGTTCACAGCTGCCTCACCATCTAGAAATGCTAATATTGGTGACAAATGTGACTGGTCTTTACACGAAGATGTAAATGTTTCGCCAACTTCAATCATGAATGATGACAGTGAAAGCACAGAGTCAATGGTGTTACTCAAGTACTCATCCCCGCGACCTTGCAGTCCGTGCGACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

113

Amino Acids

12.38

Weight (kDa)

4.39

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	324
AccII	CGCG	1 cut(s)	316
AciI	CCGC	1 cut(s)	314
AfaI	GTAC	2 cut(s)	78, 305
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	92, 255
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	171, 173, 215
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	67, 190
BfaI	CTAG	2 cut(s)	131, 186
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	12, 137
BseNI	ACTGG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	126
BsnI	GGCC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	2 cut(s)	13, 136
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	137, 272, 338
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	21, 123
BstF5I	GGATG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	277
CciI	TCATGA	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	77, 304
CviAII	CATG	2 cut(s)	154, 259
CviJI	RGCY	3 cut(s)	63, 130, 173
CviKI_1	RGCY	3 cut(s)	63, 130, 173
CviQI	GTAC	2 cut(s)	77, 304
DdeI	CTNAG	2 cut(s)	21, 123
DrdI	GACNNNNNNGTC	1 cut(s)	324
DseDI	GACNNNNNNGTC	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
FaeI	CATG	2 cut(s)	157, 262
FaiI	YATR	2 cut(s)	155, 260
FatI	CATG	2 cut(s)	153, 258
FauI	CCCGC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	2 cut(s)	131, 186
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	157, 262
HinfI	GANTC	3 cut(s)	40, 116, 284
HphI	GGTGA	3 cut(s)	171, 173, 215
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	44, 186, 259
Hpy8I	GTNNAC	1 cut(s)	168
HpyCH4III	ACNGT	3 cut(s)	137, 272, 338
HpyCH4V	TGCA	2 cut(s)	37, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	2 cut(s)	21, 123
Hsp92II	CATG	2 cut(s)	157, 262
LpnPI	CCDG	4 cut(s)	44, 81, 110, 202
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	2 cut(s)	131, 186
MaeIII	GTNAC	3 cut(s)	203, 212, 294
MboII	GAAGA	2 cut(s)	41, 242
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	3 cut(s)	49, 125, 293
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	2 cut(s)	130, 187
MseI	TTAA	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	330
NlaIII	CATG	2 cut(s)	157, 262
NmuCI	GTSAC	2 cut(s)	203, 212
PagI	TCATGA	1 cut(s)	258
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	3 cut(s)	48, 124, 292
PpsI	GAGTC	3 cut(s)	48, 124, 292
PspPI	GGNCC	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	78, 305
RsaNI	GTAC	2 cut(s)	77, 304
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	3 cut(s)	49, 125, 293
SetI	ASST	2 cut(s)	175, 322
SfaNI	GCATC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	131, 186
TaaI	ACNGT	3 cut(s)	137, 272, 338
TasI	AATT	1 cut(s)	105
TatI	WGTACW	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	203, 212
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	2 cut(s)	203, 212
TspDTI	ATGAA	2 cut(s)	170, 275
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	185
XspI	CTAG	2 cut(s)	131, 186
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.