Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

2283680 .. 2283988

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG013500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCTTTGCGGTGCTGAACTTTCCAAGAGGCCATCAGAATTCTGCAGTGAAAATGCTCTACAACTGAAAACCATGGAAGAAATGTCCAAGCTGAGAAAGCAGCTGCTCAAACCTTTCTTTGATCAAAGGAGGTTTTCTGGAGGTGATGACGAGCTACACAATTTTTCATGGATGTATGGAACTCTAGAAGATGTACAACGTGCTTGGCATGATAAGAACCTTCTTGATAAAAATCCTCTTTCAAGGAATGAGGAAAGGCTCTTGAGGCAAGCTAGGCTGGCAAGCTATCTGCGCTGGTTGAGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

102

Amino Acids

12.21

Weight (kDa)

9.06

Isoelectric Point (pI)

68.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	243
AluBI	AGCT	5 cut(s)	91, 103, 154, 272, 285
AluI	AGCT	5 cut(s)	91, 103, 154, 272, 285
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	100, 103
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	90, 112
BccI	CCATC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	121
BfaI	CTAG	2 cut(s)	185, 273
BfmI	CTRYAG	1 cut(s)	43
BisI	GCNGC	2 cut(s)	101, 104
BlsI	GCNGC	2 cut(s)	102, 105
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	90, 112
BshFI	GGCC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	47
BsrGI	TGTACA	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	270, 279, 283
BstDEI	CTNAG	1 cut(s)	92
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 265, 274, 278, 291, 300
BstSFI	CTRYAG	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	90, 112
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	3 cut(s)	270, 279, 283
CfoI	GCGC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	73, 168, 209
CviJI	RGCY	8 cut(s)	31, 91, 103, 154, 259, 272, 277, 285
CviKI_1	RGCY	8 cut(s)	31, 91, 103, 154, 259, 272, 277, 285
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	76, 171, 212
FaiI	YATR	4 cut(s)	74, 169, 177, 210
FatI	CATG	3 cut(s)	72, 167, 208
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	101, 104
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	101, 104
FspBI	CTAG	2 cut(s)	185, 273
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	2 cut(s)	101, 104
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	76, 171, 212
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	4 cut(s)	138, 185, 224, 262
HpyAV	CCTTC	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 265, 274, 278, 291, 300
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	3 cut(s)	76, 171, 212
HspAI	GCGC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	123, 263, 280
Lsp1109I	GCAGC	2 cut(s)	90, 112
MaeI	CTAG	2 cut(s)	185, 273
MaeII	ACGT	1 cut(s)	199
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	89, 200
MluCI	AATT	2 cut(s)	38, 160
MnlI	CCTC	6 cut(s)	21, 123, 134, 244, 246, 258
MspA1I	CMGCKG	1 cut(s)	103
MwoI	GCNNNNNNNGC	6 cut(s)	97, 265, 274, 278, 291, 300
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	76, 171, 212
PkrI	GCNGC	2 cut(s)	102, 105
PstI	CTGCAG	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	101, 104
Sau3AI	GATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	2 cut(s)	38, 160
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	185, 273
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	202
TasI	AATT	2 cut(s)	38, 160
TatI	WGTACW	1 cut(s)	193
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	2 cut(s)	100, 103
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	184
XspI	CTAG	2 cut(s)	185, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.