Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1445126 .. 1446999

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG009400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGACAGAAGGAATATTACTACGAGAAATCCAGAGTGATTTTTGGTTGAAGCAGTACTCTGTCATCATTCTTGATGAGGTTCATGAGCGGAGCTTGTGCACAGACATACTTATCGGAATGCTTTCACGTGCAATTCCTTTTCGTCAGAAATTATATGACGAGCAGCAAAATTTATTGCATGAGGGAGTAACTATAAGTTCTGAAAACCGGATTTTTCCATTAAAGCTTGTGCTGATGAGTGCCACCTTGCAAGTGGAAGACTTCGTTAAGCAATTTCCTGTTCCCCCACCGGTTATAGATGTTTCCGGCAGACAGTTTAAAGAAATAACTAGGAATGAGATCAGTGAAGCATTTGATGTCCATGACAACTTAAATGATCATCAAACTGACAGCGACAGATTTTGCTCTGACGATGAATATCATTATGAGGTAGATGCCCCAGAAATTGAGGGTAATGTTGCAGATATTTTAGAAGAGAAAGTAAGCATTGTATCACTGAAGGCTGCTTTTGAAGGTTTAGTCAAGGAGGGAGAACGGCTTGTTGTTGTGGCCACCAATGTGGCCGGAACCTCTAAAACTATATGTGGGATAAAGTATGTTGTCGATACTGGAAAAGTAAAGGTGAAGAAATACAATCCCTCAAATAGCATGGAGACATTTGAAGTAGAGTGGATGAGTAAGGCATCGGCTGATCAACGTAAAGGAAGAGCTGGAAGAACAGGGCCTGGCCACTGTCACCGCCTGTATTCTTCTGCAGTATATGATAATTTTCCTGAGTTTTCCGTACCTGAAATATCCAAAGTCCCTGTTGATGGTCTTGTCCTTCTACTGAAGTCCATGGATATCCACGAGAGGGTGTGGTTGAAGCAGAGCTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

293

Amino Acids

33.2

Weight (kDa)

5.13

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	88
AciI	CCGC	2 cut(s)	88, 739
AcoI	YGGCCR	3 cut(s)	549, 561, 727
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	2 cut(s)	518, 851
AcvI	CACGTG	1 cut(s)	128
AfaI	GTAC	2 cut(s)	56, 786
AfiI	CCNNNNNNNGG	2 cut(s)	812, 853
AgeI	ACCGGT	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	49, 512, 662, 865
AjnI	CCWGG	1 cut(s)	724
AleI	CACNNNNGTG	1 cut(s)	557
AluBI	AGCT	4 cut(s)	93, 226, 710, 873
AluI	AGCT	4 cut(s)	93, 226, 710, 873
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	647
Alw44I	GTGCAC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	4 cut(s)	549, 561, 722, 727
ApaLI	GTGCAC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	163, 503
ApoI	RAATTY	1 cut(s)	169
AsiGI	ACCGGT	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	722
AsuHPI	GGTGA	2 cut(s)	634, 728
BaeGI	GKGCMC	1 cut(s)	101
BalI	TGGCCA	2 cut(s)	551, 729
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	848
BbrPI	CACGTG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	175, 490
BccI	CCATC	1 cut(s)	806
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	726
BclI	TGATCA	2 cut(s)	376, 691
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	753
BisI	GCNGC	2 cut(s)	164, 504
BlsI	GCNGC	2 cut(s)	165, 505
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	722
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	2 cut(s)	424, 692
BpiI	GAAGAC	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	837
BsaWI	WCCGGW	2 cut(s)	207, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	812, 853
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	837
BseGI	GGATG	1 cut(s)	678
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	812, 853
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	1 cut(s)	613
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	175, 490
BshFI	GGCC	4 cut(s)	551, 563, 724, 729
BshTI	ACCGGT	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	208, 290, 306, 564
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	812, 853
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	1 cut(s)	788
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	4 cut(s)	551, 563, 724, 729
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	339, 376, 691
Bsp19I	CCATGG	1 cut(s)	837
BspACI	CCGC	2 cut(s)	88, 739
BspANI	GGCC	4 cut(s)	551, 563, 724, 729
BspCNI	CTCAG	1 cut(s)	766
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	568
BspMAI	CTGCAG	1 cut(s)	757
BspQI	GCTCTTC	1 cut(s)	700
BsrBI	CCGCTC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	837
BssMI	GATC	3 cut(s)	339, 376, 691
BssSI	CACGAG	1 cut(s)	848
BssT1I	CCWWGG	1 cut(s)	837
Bst2BI	CACGAG	1 cut(s)	848
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	315, 734
Bst6I	CTCTTC	2 cut(s)	468, 700
BstBAI	YACGTR	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	774
BstDSI	CCRYGG	1 cut(s)	837
BstF5I	GGATG	1 cut(s)	678
BstKTI	GATC	3 cut(s)	342, 379, 694
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	3 cut(s)	339, 376, 691
BstNI	CCWGG	1 cut(s)	726
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	175, 490
BstV2I	GAAGAC	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	559
BsuRI	GGCC	4 cut(s)	551, 563, 724, 729
BtgI	CCRYGG	1 cut(s)	837
BtsCI	GGATG	1 cut(s)	678
BtsIMutI	CAGTG	3 cut(s)	349, 494, 730
CaiI	CAGNNNCTG	1 cut(s)	725
CciI	TCATGA	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	722
Csp6I	GTAC	2 cut(s)	55, 785
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	5 cut(s)	83, 179, 362, 649, 838
CviQI	GTAC	2 cut(s)	55, 785
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	3 cut(s)	341, 378, 693
DpnII	GATC	3 cut(s)	339, 376, 691
DraI	TTTAAA	1 cut(s)	319
EaeI	YGGCCR	3 cut(s)	549, 561, 727
Eam1104I	CTCTTC	2 cut(s)	468, 700
EarI	CTCTTC	2 cut(s)	468, 700
Eco130I	CCWWGG	1 cut(s)	837
Eco32I	GATATC	1 cut(s)	844
Eco57I	CTGAAG	2 cut(s)	518, 851
Eco72I	CACGTG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	722
EcoRII	CCWGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	837
FaeI	CATG	5 cut(s)	86, 182, 365, 652, 841
FalI	AAGNNNNNCTT	1 cut(s)	857
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	5 cut(s)	82, 178, 361, 648, 837
FbaI	TGATCA	2 cut(s)	376, 691
Fnu4HI	GCNGC	2 cut(s)	164, 504
FokI	GGATG	1 cut(s)	685
Fsp4HI	GCNGC	2 cut(s)	164, 504
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	164, 504
HaeIII	GGCC	4 cut(s)	551, 563, 724, 729
HapII	CCGG	4 cut(s)	208, 290, 306, 564
Hin1II	CATG	5 cut(s)	86, 182, 365, 652, 841
HindIII	AAGCTT	1 cut(s)	224
HpaII	CCGG	4 cut(s)	208, 290, 306, 564
HphI	GGTGA	2 cut(s)	634, 728
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	4 cut(s)	116, 147, 202, 409
Hpy188III	TCNNGA	4 cut(s)	31, 71, 83, 773
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	3 cut(s)	493, 506, 833
HpyCH4III	ACNGT	2 cut(s)	315, 734
HpyCH4IV	ACGT	2 cut(s)	127, 697
HpyCH4V	TGCA	6 cut(s)	99, 131, 178, 250, 461, 755
HpyF3I	CTNAG	1 cut(s)	774
HpySE526I	ACGT	2 cut(s)	127, 697
Hsp92II	CATG	5 cut(s)	86, 182, 365, 652, 841
Ksp22I	TGATCA	2 cut(s)	376, 691
Kzo9I	GATC	3 cut(s)	339, 376, 691
LguI	GCTCTTC	1 cut(s)	700
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	175, 490
LweI	GCATC	2 cut(s)	424, 692
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	127, 697
MaeIII	GTNAC	2 cut(s)	187, 734
MalI	GATC	3 cut(s)	341, 378, 693
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	3 cut(s)	339, 376, 691
MboII	GAAGA	6 cut(s)	269, 485, 637, 717, 726, 741
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	2 cut(s)	551, 729
MluCI	AATT	6 cut(s)	132, 149, 169, 272, 444, 766
MluNI	TGGCCA	2 cut(s)	551, 729
MnlI	CCTC	8 cut(s)	70, 175, 421, 442, 520, 580, 649, 846
Mox20I	TGGCCA	2 cut(s)	551, 729
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	2 cut(s)	551, 729
MseI	TTAA	5 cut(s)	221, 267, 318, 371, 880
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	2 cut(s)	551, 729
MspI	CCGG	4 cut(s)	208, 290, 306, 564
MspR9I	CCNGG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	726
NcoI	CCATGG	1 cut(s)	837
NdeII	GATC	3 cut(s)	339, 376, 691
NlaIII	CATG	5 cut(s)	86, 182, 365, 652, 841
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	734
OliI	CACNNNNGTG	1 cut(s)	557
PagI	TCATGA	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	700
PctI	GAATGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	121
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	165, 505
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	724
PspCI	CACGTG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	722
PstI	CTGCAG	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	725
RsaI	GTAC	2 cut(s)	56, 786
RsaNI	GTAC	2 cut(s)	55, 785
RseI	CAYNNNNRTG	1 cut(s)	557
SapI	GCTCTTC	1 cut(s)	700
SaqAI	TTAA	5 cut(s)	221, 267, 318, 371, 880
SatI	GCNGC	2 cut(s)	164, 504
Sau3AI	GATC	3 cut(s)	339, 376, 691
Sau96I	GGNCC	1 cut(s)	722
ScaI	AGTACT	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	424, 692
SfcI	CTRYAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	557
Sse9I	AATT	6 cut(s)	132, 149, 169, 272, 444, 766
SsiI	CCGC	2 cut(s)	88, 739
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	2 cut(s)	315, 734
TaiI	ACGT	2 cut(s)	130, 700
TaqI	TCGA	1 cut(s)	603
TasI	AATT	6 cut(s)	132, 149, 169, 272, 444, 766
TatI	WGTACW	1 cut(s)	54
Tru1I	TTAA	5 cut(s)	221, 267, 318, 371, 880
Tru9I	TTAA	5 cut(s)	221, 267, 318, 371, 880
TscAI	CASTG	3 cut(s)	349, 501, 737
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	2 cut(s)	163, 503
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	2 cut(s)	71, 429
TspGWI	ACGGA	1 cut(s)	772
TspRI	CASTG	3 cut(s)	349, 501, 737
VneI	GTGCAC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.