Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1796882 .. 1798070

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAAAGCAATTGGAAAGAAGCATGTATATCAGAAATGACTAGCAATTGTCTTTCAAGCAGCTCTGGAGGAGCTGAATCAGCTGATAGCAACACAACCATCTTGCCAGATAAGAGAAGGAATAAAAGGAAGGGTGCCAATGAGGAGGAGAAGGAAAACACACTTCTGCTATCAAAAAGCACCGTGGCTTTAGTGAAATATACGATTCCAGAAGGTGCATATGCTATTCTGCAGTCATCACAAAATATTGGCCAGGTTGAATCAAGAAAGAGAAAACGAAGCAGAGCCCTAGCATTCTCCAAAGCTGGAATTGAAGTTTCCCATGCTGACCAACCATTAAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

115

Amino Acids

12.64

Weight (kDa)

9.69

Isoelectric Point (pI)

83.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	57, 260, 314
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	4 cut(s)	63, 74, 83, 305
AluI	AGCT	4 cut(s)	63, 74, 83, 305
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	254
BfaI	CTAG	2 cut(s)	42, 290
BfmI	CTRYAG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	84, 158, 161
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	183
CviAII	CATG	2 cut(s)	24, 323
CviJI	RGCY	7 cut(s)	63, 74, 83, 188, 252, 287, 305
CviKI_1	RGCY	7 cut(s)	63, 74, 83, 188, 252, 287, 305
EaeI	YGGCCR	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	2 cut(s)	27, 326
FaiI	YATR	6 cut(s)	25, 29, 201, 220, 222, 324
FatI	CATG	2 cut(s)	23, 322
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	2 cut(s)	42, 290
GluI	GCNGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	27, 326
HinfI	GANTC	3 cut(s)	77, 205, 260
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	66, 209, 264
HpyAV	CCTTC	4 cut(s)	111, 124, 145, 206
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	218, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	27, 326
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	51, 120, 222, 239, 266, 291
Lsp1109I	GCAGC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	42, 290
MfeI	CAATTG	2 cut(s)	10, 46
MhlI	GDGCHC	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	3 cut(s)	10, 46, 309
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	3 cut(s)	62, 136, 139
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	254
MunI	CAATTG	2 cut(s)	10, 46
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeI	CATATG	1 cut(s)	220
NlaIII	CATG	2 cut(s)	27, 326
NlaIV	GGNNCC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	27
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	77, 205, 260
PkrI	GCNGC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	6 cut(s)	65, 76, 85, 217, 258, 307
SfcI	CTRYAG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	10, 46, 309
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	42, 290
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	3 cut(s)	10, 46, 309
TfiI	GAWTC	3 cut(s)	77, 205, 260
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseI	GCWGC	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	2 cut(s)	42, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.