Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1227601 .. 1229815

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG008800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCCACATGGGAGCATACTAGTTTTTGTCACCGGGAAGAGGGAACTAGAGTCGTTGTGTCAAAAGCTACTTAGAGCTTGGAGTAAAATGGTTATGAAAATGTCAATTGGGAGTGACAGCACTGAAGTTTCTGAAATAAACTCTGGTCAGGAAATAACTAGGAATGAGATCAGTGAAGCATTTGATGTCCATGACAACTTAAATGACCATCAAACTGACAGCGACAGATTTTGCTCTGACGATGAATATCATTATGAGGTAGGTGAGGATGAGTGTAGTACTTCATATGATTCAGAACTAGAGAATATTTTAGAAGAGAAAGTAAGCATTGTATCACTGAAGGCTGCTTTTGAAGGTTTAGTCAGAAAAACATCATTGGGCAATAAGTCAGATGGCAAACAATCTAATTCAGTTACTGATCTAGATGCTTGTCCTAATCAATCCAATTGTCTCATAGGGAAAAAGGGTAGTGTTAAAGATGGTAGAATGCCAGGGATCAAACTTTCAGAGAGGCCATCAGAATTCTGCAATGAAAATGCTCTACAACTGAAAACCATGGAAGAAATGTCCAAGCTGAGAAAGCAGCTGCTCAAACCTTTCTTTGATCAAAGGAGGTTTTCCGGAGGTGATGACGAGCTACGCAATTTTTCATGGATGTATGGAACTCTGGAAGATGTACAACATGCTTGGCATGATAAGAACCTTCTTGATAAAAATCCTCTTTCAAGGAATGAGGAAAGGCTCTTGAGGCAAGGCTGGCAAGCTATCTGCGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

259

Amino Acids

29.41

Weight (kDa)

5.07

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005552)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G445700_v2.0.a1 Prupe.1G445700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0386401 RchiOBHm_Chr4g0386411 RchiOBHm_Chr4g0386421
rosa_laevigata	RLG00000010164
rosa_multiflora	Rmu_sc0000472.1_g000003 Rmu_sc0001942.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333900 Rroxscaffold_5G00333930
rosa_rugosa	Rorug03G0306700 Rorug03G0306800 Rorug03G0306900
rosa_samantha	Rh4AG011200 Rh4AG011300 Rh4AG011400 Rh4BG008800 Rh4BG008900 Rh4CG013400 Rh4CG013500 Rh4CG013600 Rh4CG013700 Rh4CG013800 Rh4CG013900 Rh4CG014000 Rh4DG009400 Rh4DG009600 Rh4DG009700
rosa_wichuraiana	Rw4G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	620
AclWI	GGATC	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	2 cut(s)	144, 359
AfaI	GTAC	2 cut(s)	280, 678
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	353, 726
AhlI	ACTAGT	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	6 cut(s)	67, 77, 574, 586, 637, 764
AluI	AGCT	6 cut(s)	67, 77, 574, 586, 637, 764
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	620
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	3 cut(s)	344, 583, 586
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	773
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	22, 275, 638
BbvI	GCAGC	3 cut(s)	331, 573, 595
BccI	CCATC	4 cut(s)	216, 386, 473, 523
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	455
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	5 cut(s)	20, 47, 159, 299, 422
BisI	GCNGC	3 cut(s)	345, 584, 587
BlsI	GCNGC	3 cut(s)	346, 585, 588
BmcAI	AGTACT	1 cut(s)	280
Bme1390I	CCNGG	2 cut(s)	34, 492
BmrFI	CCNGG	2 cut(s)	34, 492
BmsI	GCATC	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	766
BpuMI	CCSGG	1 cut(s)	34
BsaBI	GATNNNNATC	2 cut(s)	246, 714
BsaJI	CCNNGG	2 cut(s)	491, 555
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	2 cut(s)	246, 714
BseAI	TCCGGA	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	491, 555
BseGI	GGATG	2 cut(s)	274, 660
BseJI	GATNNNNATC	2 cut(s)	246, 714
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	566
BseXI	GCAGC	3 cut(s)	331, 573, 595
BshFI	GGCC	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	33, 621
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	620
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	4 cut(s)	168, 418, 495, 604
Bsp19I	CCATGG	1 cut(s)	555
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	1 cut(s)	567
BspEI	TCCGGA	1 cut(s)	620
BspPI	GGATC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	535
BsrGI	TGTACA	1 cut(s)	676
BssECI	CCNNGG	2 cut(s)	491, 555
BssMI	GATC	4 cut(s)	168, 418, 495, 604
BssT1I	CCWWGG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	492
Bst6I	CTCTTC	2 cut(s)	32, 309
BstAUI	TGTACA	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	758, 762
BstDEI	CTNAG	2 cut(s)	71, 575
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	274, 660
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	4 cut(s)	171, 421, 498, 607
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	168, 418, 495, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	580, 748, 757, 770
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	2 cut(s)	32, 490
BstV1I	GCAGC	3 cut(s)	331, 573, 595
BsuRI	GGCC	1 cut(s)	514
BtgI	CCRYGG	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	274, 660
BtsIMutI	CAGTG	3 cut(s)	120, 178, 335
Cac8I	GCNNGC	2 cut(s)	758, 762
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	1 cut(s)	773
Csp6I	GTAC	2 cut(s)	279, 677
CviAII	CATG	6 cut(s)	8, 191, 556, 651, 683, 692
CviQI	GTAC	2 cut(s)	279, 677
DdeI	CTNAG	2 cut(s)	71, 575
DpnI	GATC	4 cut(s)	170, 420, 497, 606
DpnII	GATC	4 cut(s)	168, 418, 495, 604
Eam1104I	CTCTTC	2 cut(s)	32, 309
EarI	CTCTTC	2 cut(s)	32, 309
Eco130I	CCWWGG	1 cut(s)	555
Eco57I	CTGAAG	2 cut(s)	144, 359
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	6 cut(s)	11, 194, 559, 654, 686, 695
FatI	CATG	6 cut(s)	7, 190, 555, 650, 682, 691
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	345, 584, 587
FokI	GGATG	2 cut(s)	281, 667
Fsp4HI	GCNGC	3 cut(s)	345, 584, 587
FspBI	CTAG	5 cut(s)	20, 47, 159, 299, 422
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	3 cut(s)	345, 584, 587
HaeIII	GGCC	1 cut(s)	514
HapII	CCGG	2 cut(s)	33, 621
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	6 cut(s)	11, 194, 559, 654, 686, 695
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HinfI	GANTC	2 cut(s)	50, 290
HpaII	CCGG	2 cut(s)	33, 621
HphI	GGTGA	3 cut(s)	22, 275, 638
Hpy188I	TCNGA	7 cut(s)	133, 238, 295, 365, 391, 508, 520
Hpy188III	TCNNGA	6 cut(s)	149, 422, 621, 668, 707, 745
HpyAV	CCTTC	3 cut(s)	334, 347, 713
HpyCH4V	TGCA	1 cut(s)	528
HpyF10VI	GCNNNNNNNGC	4 cut(s)	580, 748, 757, 770
HpyF3I	CTNAG	2 cut(s)	71, 575
Hsp92II	CATG	6 cut(s)	11, 194, 559, 654, 686, 695
HspAI	GCGC	1 cut(s)	771
Kpn2I	TCCGGA	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	168, 418, 495, 604
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	9 cut(s)	46, 129, 134, 477, 504, 634, 653, 742, 759
Lsp1109I	GCAGC	3 cut(s)	331, 573, 595
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	5 cut(s)	20, 47, 159, 299, 422
MaeIII	GTNAC	3 cut(s)	28, 113, 412
MalI	GATC	4 cut(s)	170, 420, 497, 606
MboI	GATC	4 cut(s)	168, 418, 495, 604
MboII	GAAGA	4 cut(s)	49, 326, 572, 683
MfeI	CAATTG	2 cut(s)	105, 445
MluCI	AATT	5 cut(s)	105, 406, 445, 521, 643
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	9 cut(s)	33, 250, 259, 504, 606, 617, 727, 729, 741
MroI	TCCGGA	1 cut(s)	620
MseI	TTAA	2 cut(s)	200, 474
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	2 cut(s)	33, 621
MspR9I	CCNGG	2 cut(s)	34, 492
MunI	CAATTG	2 cut(s)	105, 445
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	4 cut(s)	580, 748, 757, 770
NciI	CCSGG	1 cut(s)	34
NcoI	CCATGG	1 cut(s)	555
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	4 cut(s)	168, 418, 495, 604
NlaIII	CATG	6 cut(s)	11, 194, 559, 654, 686, 695
NmuCI	GTSAC	2 cut(s)	28, 113
NspI	RCATGY	1 cut(s)	686
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	346, 585, 588
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	586
RsaI	GTAC	2 cut(s)	280, 678
RsaNI	GTAC	2 cut(s)	279, 677
SaqAI	TTAA	2 cut(s)	200, 474
SatI	GCNGC	3 cut(s)	345, 584, 587
Sau3AI	GATC	4 cut(s)	168, 418, 495, 604
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	34, 492
SfaNI	GCATC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	745
SmoI	CTYRAG	1 cut(s)	745
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	5 cut(s)	105, 406, 445, 521, 643
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	5 cut(s)	20, 47, 159, 299, 422
StyD4I	CCNGG	2 cut(s)	32, 490
StyI	CCWWGG	1 cut(s)	555
TasI	AATT	5 cut(s)	105, 406, 445, 521, 643
TatI	WGTACW	2 cut(s)	278, 676
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	200, 474
Tru9I	TTAA	2 cut(s)	200, 474
TscAI	CASTG	3 cut(s)	127, 178, 342
TseFI	GTSAC	2 cut(s)	28, 113
TseI	GCWGC	3 cut(s)	344, 583, 586
Tsp45I	GTSAC	2 cut(s)	28, 113
TspDTI	ATGAA	5 cut(s)	110, 258, 273, 546, 639
TspRI	CASTG	3 cut(s)	127, 178, 342
XapI	RAATTY	1 cut(s)	521
XbaI	TCTAGA	1 cut(s)	421
XceI	RCATGY	1 cut(s)	686
XspI	CTAG	5 cut(s)	20, 47, 159, 299, 422
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.